PDB Short entry for 5B76 HEADER TRANSFERASE 05-JUN-16 5B76 TITLE CRYSTAL STRUCTURE OF MOZ DOUBLE PHD FINGER DOMAIN IN COMPLEX WITH TITLE 2 HISTONE H3 CROTONYLATION AT K14 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE ACETYLTRANSFERASE KAT6A; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 194-323; COMPND 5 SYNONYM: MOZ; COMPND 6 EC: 2.3.1.48; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: HISTONE H3; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: UNP RESIDUES 2-26; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MOZ; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS DOUBLE PHD FINGER, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR H.LI,X.XIONG REVDAT 4 15-NOV-23 5B76 1 ATOM REVDAT 3 08-NOV-23 5B76 1 REMARK REVDAT 2 30-NOV-16 5B76 1 JRNL REVDAT 1 26-OCT-16 5B76 0 JRNL AUTH X.XIONG,T.PANCHENKO,S.YANG,S.ZHAO,P.YAN,W.ZHANG,W.XIE,Y.LI, JRNL AUTH 2 Y.ZHAO,C.D.ALLIS,H.LI JRNL TITL SELECTIVE RECOGNITION OF HISTONE CROTONYLATION BY DOUBLE PHD JRNL TITL 2 FINGERS OF MOZ AND DPF2 JRNL REF NAT.CHEM.BIOL. V. 12 1111 2016 JRNL REFN ESSN 1552-4469 JRNL PMID 27775714 JRNL DOI 10.1038/NCHEMBIO.2218 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.06 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 21315 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.120 REMARK 3 FREE R VALUE TEST SET COUNT : 1092 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.0625 - 3.3039 0.99 2690 130 0.1575 0.2350 REMARK 3 2 3.3039 - 2.6234 1.00 2580 139 0.1815 0.2087 REMARK 3 3 2.6234 - 2.2921 1.00 2551 139 0.1777 0.2042 REMARK 3 4 2.2921 - 2.0827 0.97 2429 155 0.2332 0.2757 REMARK 3 5 2.0827 - 1.9334 0.99 2503 149 0.2049 0.2305 REMARK 3 6 1.9334 - 1.8195 0.98 2473 130 0.2743 0.3311 REMARK 3 7 1.8195 - 1.7284 1.00 2497 131 0.2016 0.2215 REMARK 3 8 1.7284 - 1.6532 0.99 2500 119 0.2122 0.2582 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.100 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.040 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 1154 REMARK 3 ANGLE : 0.628 1550 REMARK 3 CHIRALITY : 0.042 163 REMARK 3 PLANARITY : 0.004 203 REMARK 3 DIHEDRAL : 12.849 725 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 193 THROUGH 202 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.5227 -6.4444 -5.8620 REMARK 3 T TENSOR REMARK 3 T11: 0.6045 T22: 0.5521 REMARK 3 T33: 0.4926 T12: -0.0621 REMARK 3 T13: -0.1351 T23: 0.0732 REMARK 3 L TENSOR REMARK 3 L11: 1.9607 L22: 1.4725 REMARK 3 L33: 3.2420 L12: -0.7329 REMARK 3 L13: -2.2071 L23: 1.6565 REMARK 3 S TENSOR REMARK 3 S11: 0.1046 S12: -1.1445 S13: -0.2170 REMARK 3 S21: 0.9845 S22: -0.0134 S23: -0.7456 REMARK 3 S31: 0.6668 S32: 1.0245 S33: 0.1063 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 203 THROUGH 212 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.5217 7.0862 -20.3966 REMARK 3 T TENSOR REMARK 3 T11: 0.2658 T22: 0.1743 REMARK 3 T33: 0.2234 T12: 0.0108 REMARK 3 T13: -0.0393 T23: -0.0073 REMARK 3 L TENSOR REMARK 3 L11: 0.2236 L22: 0.1256 REMARK 3 L33: 0.1684 L12: 0.0041 REMARK 3 L13: 0.2181 L23: -0.1690 REMARK 3 S TENSOR REMARK 3 S11: -0.0091 S12: 0.0220 S13: 0.0191 REMARK 3 S21: 0.0143 S22: 0.1498 S23: 0.1582 REMARK 3 S31: 0.1112 S32: -0.1806 S33: 0.0002 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 213 THROUGH 229 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.2142 9.8661 -27.6896 REMARK 3 T TENSOR REMARK 3 T11: 0.4304 T22: 0.2277 REMARK 3 T33: 0.1904 T12: 0.0616 REMARK 3 T13: 0.0120 T23: 0.0124 REMARK 3 L TENSOR REMARK 3 L11: 0.7224 L22: 0.3417 REMARK 3 L33: 0.3615 L12: -0.0481 REMARK 3 L13: -0.1743 L23: -0.2450 REMARK 3 S TENSOR REMARK 3 S11: 0.0797 S12: 0.0762 S13: -0.0071 REMARK 3 S21: -0.4616 S22: -0.1408 S23: -0.1091 REMARK 3 S31: 0.2709 S32: 0.1543 S33: -0.0120 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 230 THROUGH 245 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.4511 8.5210 -16.8520 REMARK 3 T TENSOR REMARK 3 T11: 0.2175 T22: 0.1793 REMARK 3 T33: 0.2282 T12: 0.0219 REMARK 3 T13: -0.0114 T23: 0.0070 REMARK 3 L TENSOR REMARK 3 L11: 0.1676 L22: 0.3841 REMARK 3 L33: 0.2526 L12: -0.0319 REMARK 3 L13: 0.2127 L23: -0.2157 REMARK 3 S TENSOR REMARK 3 S11: -0.0377 S12: 0.0366 S13: -0.1085 REMARK 3 S21: -0.1480 S22: -0.1094 S23: -0.1321 REMARK 3 S31: 0.1035 S32: -0.0433 S33: -0.0001 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 246 THROUGH 264 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.5564 4.3393 -12.0064 REMARK 3 T TENSOR REMARK 3 T11: 0.2107 T22: 0.1940 REMARK 3 T33: 0.2702 T12: 0.0373 REMARK 3 T13: -0.0094 T23: -0.0203 REMARK 3 L TENSOR REMARK 3 L11: 0.6708 L22: 0.9871 REMARK 3 L33: 1.5676 L12: -0.1672 REMARK 3 L13: 0.9591 L23: -0.4785 REMARK 3 S TENSOR REMARK 3 S11: 0.1415 S12: -0.1258 S13: 0.1007 REMARK 3 S21: -0.0552 S22: -0.0893 S23: -0.0918 REMARK 3 S31: 0.1894 S32: 0.1698 S33: 0.0002 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 265 THROUGH 277 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.2496 7.7710 2.9947 REMARK 3 T TENSOR REMARK 3 T11: 0.2591 T22: 0.3879 REMARK 3 T33: 0.2754 T12: 0.0245 REMARK 3 T13: 0.0045 T23: -0.0462 REMARK 3 L TENSOR REMARK 3 L11: 0.5635 L22: 0.1639 REMARK 3 L33: 0.5453 L12: -0.0124 REMARK 3 L13: 0.3169 L23: -0.1118 REMARK 3 S TENSOR REMARK 3 S11: 0.0551 S12: -0.4713 S13: 0.1515 REMARK 3 S21: 0.2535 S22: -0.1213 S23: 0.1054 REMARK 3 S31: -0.0524 S32: -0.4792 S33: -0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 278 THROUGH 297 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.1590 7.7519 -0.0380 REMARK 3 T TENSOR REMARK 3 T11: 0.2009 T22: 0.2731 REMARK 3 T33: 0.2194 T12: 0.0036 REMARK 3 T13: -0.0263 T23: -0.0026 REMARK 3 L TENSOR REMARK 3 L11: 0.7763 L22: 0.2367 REMARK 3 L33: 0.4373 L12: 0.4086 REMARK 3 L13: 0.5500 L23: 0.1810 REMARK 3 S TENSOR REMARK 3 S11: 0.0357 S12: -0.1323 S13: -0.0638 REMARK 3 S21: 0.1584 S22: -0.0718 S23: -0.1112 REMARK 3 S31: 0.1717 S32: 0.0970 S33: -0.0000 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 298 THROUGH 307 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.5262 14.0293 -0.6067 REMARK 3 T TENSOR REMARK 3 T11: 0.2890 T22: 0.3345 REMARK 3 T33: 0.2432 T12: -0.0393 REMARK 3 T13: -0.0042 T23: 0.0329 REMARK 3 L TENSOR REMARK 3 L11: 0.5217 L22: 0.3582 REMARK 3 L33: 0.1485 L12: -0.0597 REMARK 3 L13: 0.2629 L23: -0.1123 REMARK 3 S TENSOR REMARK 3 S11: -0.1319 S12: -0.1700 S13: -0.0519 REMARK 3 S21: 0.1836 S22: -0.0679 S23: 0.0902 REMARK 3 S31: -0.1966 S32: 0.6075 S33: -0.0005 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 308 THROUGH 312 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.8693 1.8841 -2.1937 REMARK 3 T TENSOR REMARK 3 T11: 0.2847 T22: 0.5142 REMARK 3 T33: 0.3282 T12: 0.0664 REMARK 3 T13: -0.0552 T23: 0.0163 REMARK 3 L TENSOR REMARK 3 L11: 0.3507 L22: 0.1498 REMARK 3 L33: 0.1540 L12: 0.2259 REMARK 3 L13: -0.2114 L23: -0.1140 REMARK 3 S TENSOR REMARK 3 S11: 0.5681 S12: -0.2222 S13: -0.2022 REMARK 3 S21: -0.1583 S22: -0.3594 S23: -0.1498 REMARK 3 S31: 0.0470 S32: 1.5225 S33: 0.0231 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 11 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.5323 17.4347 -7.3120 REMARK 3 T TENSOR REMARK 3 T11: 0.3183 T22: 0.2581 REMARK 3 T33: 0.4054 T12: 0.0245 REMARK 3 T13: -0.0563 T23: -0.0110 REMARK 3 L TENSOR REMARK 3 L11: 0.2446 L22: 0.2468 REMARK 3 L33: 0.2049 L12: 0.0182 REMARK 3 L13: 0.1008 L23: 0.0599 REMARK 3 S TENSOR REMARK 3 S11: -0.1422 S12: -0.2877 S13: 0.5956 REMARK 3 S21: -0.0526 S22: -0.2754 S23: 0.1154 REMARK 3 S31: -0.4402 S32: -0.3607 S33: -0.0007 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 12 THROUGH 26 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.0508 14.5042 -20.5813 REMARK 3 T TENSOR REMARK 3 T11: 0.2962 T22: 0.2811 REMARK 3 T33: 0.4258 T12: 0.0055 REMARK 3 T13: -0.0259 T23: -0.0344 REMARK 3 L TENSOR REMARK 3 L11: 0.6581 L22: 0.5242 REMARK 3 L33: 0.4828 L12: -0.2241 REMARK 3 L13: -0.3594 L23: -0.2982 REMARK 3 S TENSOR REMARK 3 S11: -0.2862 S12: 0.0129 S13: -0.1118 REMARK 3 S21: 0.2613 S22: 0.1008 S23: 0.6638 REMARK 3 S31: 0.2046 S32: -0.2772 S33: -0.0023 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5B76 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-JUN-16. REMARK 100 THE DEPOSITION ID IS D_1300000652. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-NOV-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97893 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21315 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 24.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 8.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 44.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.68 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4LLB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: POLYETHYLENE GLYCOL 4000, LITHIUM REMARK 280 SULFATE, TRIS, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.06000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.05450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.81650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 38.05450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.06000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 23.81650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -40.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 313 REMARK 465 LYS A 314 REMARK 465 LYS A 315 REMARK 465 GLY A 316 REMARK 465 ARG A 317 REMARK 465 LYS A 318 REMARK 465 LEU A 319 REMARK 465 LEU A 320 REMARK 465 GLN A 321 REMARK 465 LYS A 322 REMARK 465 LYS A 323 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 602 O HOH A 604 2.01 REMARK 500 O HOH A 519 O HOH A 589 2.01 REMARK 500 O HOH A 606 O HOH A 611 2.10 REMARK 500 OD1 ASP A 294 O HOH A 501 2.13 REMARK 500 O HOH A 525 O HOH A 560 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 620 O HOH B 232 3544 2.06 REMARK 500 O HOH A 562 O HOH A 592 3544 2.06 REMARK 500 O HOH A 513 O HOH B 230 3544 2.06 REMARK 500 O HOH A 518 O HOH A 543 4555 2.07 REMARK 500 O HOH A 515 O HOH B 226 4555 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 207 35.71 -83.13 REMARK 500 GLN A 271 -67.41 -106.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 639 DISTANCE = 6.27 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 209 SG REMARK 620 2 CYS A 212 SG 112.4 REMARK 620 3 HIS A 238 ND1 99.3 98.2 REMARK 620 4 CYS A 241 SG 112.4 112.6 120.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 404 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 230 SG REMARK 620 2 CYS A 233 SG 105.8 REMARK 620 3 CYS A 259 SG 110.9 115.6 REMARK 620 4 CYS A 262 SG 107.2 116.5 100.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 265 SG REMARK 620 2 CYS A 268 SG 107.9 REMARK 620 3 HIS A 289 ND1 103.0 96.3 REMARK 620 4 CYS A 292 SG 115.1 116.5 115.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 281 SG REMARK 620 2 CYS A 284 SG 106.5 REMARK 620 3 CYS A 307 SG 108.0 111.1 REMARK 620 4 CYS A 310 SG 112.5 104.4 114.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 101 DBREF 5B76 A 194 323 UNP Q92794 KAT6A_HUMAN 194 323 DBREF 5B76 B 1 25 UNP K7EMV3 K7EMV3_HUMAN 2 26 SEQADV 5B76 SER A 193 UNP Q92794 EXPRESSION TAG SEQADV 5B76 NH2 B 26 UNP K7EMV3 AMIDATION SEQRES 1 A 131 SER LEU PRO HIS GLU LYS ASP LYS PRO VAL ALA GLU PRO SEQRES 2 A 131 ILE PRO ILE CYS SER PHE CYS LEU GLY THR LYS GLU GLN SEQRES 3 A 131 ASN ARG GLU LYS LYS PRO GLU GLU LEU ILE SER CYS ALA SEQRES 4 A 131 ASP CYS GLY ASN SER GLY HIS PRO SER CYS LEU LYS PHE SEQRES 5 A 131 SER PRO GLU LEU THR VAL ARG VAL LYS ALA LEU ARG TRP SEQRES 6 A 131 GLN CYS ILE GLU CYS LYS THR CYS SER SER CYS ARG ASP SEQRES 7 A 131 GLN GLY LYS ASN ALA ASP ASN MET LEU PHE CYS ASP SER SEQRES 8 A 131 CYS ASP ARG GLY PHE HIS MET GLU CYS CYS ASP PRO PRO SEQRES 9 A 131 LEU THR ARG MET PRO LYS GLY MET TRP ILE CYS GLN ILE SEQRES 10 A 131 CYS ARG PRO ARG LYS LYS GLY ARG LYS LEU LEU GLN LYS SEQRES 11 A 131 LYS SEQRES 1 B 26 ALA ARG THR LYS GLN THR ALA ARG LYS SER THR GLY GLY SEQRES 2 B 26 KCR ALA PRO ARG LYS GLN LEU ALA THR LYS ALA ALA NH2 MODRES 5B76 KCR B 14 LYS MODIFIED RESIDUE HET KCR B 14 30 HET NH2 B 26 1 HET ZN A 401 1 HET ZN A 402 1 HET ZN A 403 1 HET ZN A 404 1 HET SO4 A 405 5 HET SO4 A 406 5 HET SO4 B 101 5 HETNAM KCR N-6-CROTONYL-L-LYSINE HETNAM NH2 AMINO GROUP HETNAM ZN ZINC ION HETNAM SO4 SULFATE ION FORMUL 2 KCR C10 H18 N2 O3 FORMUL 2 NH2 H2 N FORMUL 3 ZN 4(ZN 2+) FORMUL 7 SO4 3(O4 S 2-) FORMUL 10 HOH *180(H2 O) HELIX 1 AA1 HIS A 238 LYS A 243 1 6 HELIX 2 AA2 SER A 245 ALA A 254 1 10 HELIX 3 AA3 ASN A 274 ASN A 277 5 4 HELIX 4 AA4 HIS A 289 CYS A 293 5 5 HELIX 5 AA5 LYS B 4 GLY B 12 1 9 HELIX 6 AA6 PRO B 16 ALA B 25 1 10 SHEET 1 AA1 2 ILE A 228 SER A 229 0 SHEET 2 AA1 2 SER A 236 GLY A 237 -1 O GLY A 237 N ILE A 228 SHEET 1 AA2 3 GLY A 287 PHE A 288 0 SHEET 2 AA2 3 LEU A 279 PHE A 280 -1 N LEU A 279 O PHE A 288 SHEET 3 AA2 3 ARG B 2 THR B 3 -1 O ARG B 2 N PHE A 280 LINK C GLY B 13 N KCR B 14 1555 1555 1.33 LINK C KCR B 14 N ALA B 15 1555 1555 1.33 LINK C ALA B 25 N NH2 B 26 1555 1555 1.33 LINK SG CYS A 209 ZN ZN A 403 1555 1555 2.31 LINK SG CYS A 212 ZN ZN A 403 1555 1555 2.34 LINK SG CYS A 230 ZN ZN A 404 1555 1555 2.33 LINK SG CYS A 233 ZN ZN A 404 1555 1555 2.32 LINK ND1 HIS A 238 ZN ZN A 403 1555 1555 2.09 LINK SG CYS A 241 ZN ZN A 403 1555 1555 2.31 LINK SG CYS A 259 ZN ZN A 404 1555 1555 2.34 LINK SG CYS A 262 ZN ZN A 404 1555 1555 2.27 LINK SG CYS A 265 ZN ZN A 402 1555 1555 2.37 LINK SG CYS A 268 ZN ZN A 402 1555 1555 2.32 LINK SG CYS A 281 ZN ZN A 401 1555 1555 2.29 LINK SG CYS A 284 ZN ZN A 401 1555 1555 2.34 LINK ND1 HIS A 289 ZN ZN A 402 1555 1555 2.20 LINK SG CYS A 292 ZN ZN A 402 1555 1555 2.31 LINK SG CYS A 307 ZN ZN A 401 1555 1555 2.28 LINK SG CYS A 310 ZN ZN A 401 1555 1555 2.26 CISPEP 1 ASP A 294 PRO A 295 0 1.12 SITE 1 AC1 4 CYS A 281 CYS A 284 CYS A 307 CYS A 310 SITE 1 AC2 4 CYS A 265 CYS A 268 HIS A 289 CYS A 292 SITE 1 AC3 4 CYS A 209 CYS A 212 HIS A 238 CYS A 241 SITE 1 AC4 4 CYS A 230 CYS A 233 CYS A 259 CYS A 262 SITE 1 AC5 3 LYS A 302 GLY A 303 ALA B 1 SITE 1 AC6 2 ARG A 299 HOH A 560 SITE 1 AC7 5 PRO B 16 ARG B 17 HOH B 202 HOH B 205 SITE 2 AC7 5 HOH B 208 CRYST1 48.120 47.633 76.109 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020781 0.000000 0.000000 0.00000 SCALE2 0.000000 0.020994 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013139 0.00000