PDB Short entry for 5CCM HEADER TRANSFERASE/TRANSFERASE INHIBITOR 02-JUL-15 5CCM TITLE CRYSTAL STRUCTURE OF SMYD3 WITH SAM AND EPZ030456 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE-LYSINE N-METHYLTRANSFERASE SMYD3; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SET AND MYND DOMAIN-CONTAINING PROTEIN 3,ZINC FINGER MYND COMPND 5 DOMAIN-CONTAINING PROTEIN 1; COMPND 6 EC: 2.1.1.43; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SMYD3, ZMYND1, ZNFN3A1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PROTEIN-INHIBITOR COMPLEX, METHYLTRANSFERASE, EPIGENETICS, DRUG KEYWDS 2 DISCOVERY, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR P.A.BORIACK-SJODIN REVDAT 3 06-MAR-24 5CCM 1 REMARK REVDAT 2 30-MAR-16 5CCM 1 JRNL REVDAT 1 09-SEP-15 5CCM 0 JRNL AUTH L.H.MITCHELL,P.A.BORIACK-SJODIN,S.SMITH,M.THOMENIUS,N.RIOUX, JRNL AUTH 2 M.MUNCHHOF,J.E.MILLS,C.KLAUS,J.TOTMAN,T.V.RIERA,A.RAIMONDI, JRNL AUTH 3 S.L.JACQUES,K.WEST,M.FOLEY,N.J.WATERS,K.W.KUNTZ,T.J.WIGLE, JRNL AUTH 4 M.P.SCOTT,R.A.COPELAND,J.J.SMITH,R.CHESWORTH JRNL TITL NOVEL OXINDOLE SULFONAMIDES AND SULFAMIDES: EPZ031686, THE JRNL TITL 2 FIRST ORALLY BIOAVAILABLE SMALL MOLECULE SMYD3 INHIBITOR. JRNL REF ACS MED.CHEM.LETT. V. 7 134 2016 JRNL REFN ISSN 1948-5875 JRNL PMID 26985287 JRNL DOI 10.1021/ACSMEDCHEMLETT.5B00272 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 18577 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 948 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.29 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.35 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1182 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.82 REMARK 3 BIN R VALUE (WORKING SET) : 0.2970 REMARK 3 BIN FREE R VALUE SET COUNT : 50 REMARK 3 BIN FREE R VALUE : 0.3530 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3384 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 69 REMARK 3 SOLVENT ATOMS : 123 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 6.20000 REMARK 3 B22 (A**2) : -1.46000 REMARK 3 B33 (A**2) : -4.74000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.432 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.263 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.210 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.939 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.908 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3540 ; 0.006 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3419 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4769 ; 1.211 ; 2.001 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7883 ; 0.772 ; 3.003 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 424 ; 5.781 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 162 ;34.538 ;24.074 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 658 ;14.376 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;15.938 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 519 ; 0.066 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3903 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 794 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1696 ; 1.442 ; 3.279 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1696 ; 1.442 ; 3.279 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2117 ; 2.454 ; 4.910 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5CCM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1000211373. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-FEB-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19568 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : 0.14600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : 0.48000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.10 M MAGNESIUM FORMATE, 0.1M TRIS REMARK 280 8.0, 14% W/V PEG 3350, PH 8.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.24200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.67900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.92600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.67900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.24200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.92600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 ARG A 426 REMARK 465 ALA A 427 REMARK 465 SER A 428 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 13 21.43 -143.77 REMARK 500 ARG A 14 44.01 -144.83 REMARK 500 LYS A 271 -5.97 73.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 49 SG REMARK 620 2 CYS A 52 SG 103.0 REMARK 620 3 CYS A 71 SG 117.0 108.8 REMARK 620 4 CYS A 75 SG 112.8 112.7 102.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 503 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 62 SG REMARK 620 2 CYS A 65 SG 106.7 REMARK 620 3 HIS A 83 NE2 110.0 110.4 REMARK 620 4 CYS A 87 SG 114.4 108.0 107.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 208 SG REMARK 620 2 CYS A 261 SG 118.9 REMARK 620 3 CYS A 263 SG 106.6 108.9 REMARK 620 4 CYS A 266 SG 98.0 111.8 112.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAM A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 4ZX A 505 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5CCL RELATED DB: PDB DBREF 5CCM A 1 428 UNP Q9H7B4 SMYD3_HUMAN 1 428 SEQADV 5CCM ASN A 13 UNP Q9H7B4 LYS 13 CONFLICT SEQRES 1 A 428 MET GLU PRO LEU LYS VAL GLU LYS PHE ALA THR ALA ASN SEQRES 2 A 428 ARG GLY ASN GLY LEU ARG ALA VAL THR PRO LEU ARG PRO SEQRES 3 A 428 GLY GLU LEU LEU PHE ARG SER ASP PRO LEU ALA TYR THR SEQRES 4 A 428 VAL CYS LYS GLY SER ARG GLY VAL VAL CYS ASP ARG CYS SEQRES 5 A 428 LEU LEU GLY LYS GLU LYS LEU MET ARG CYS SER GLN CYS SEQRES 6 A 428 ARG VAL ALA LYS TYR CYS SER ALA LYS CYS GLN LYS LYS SEQRES 7 A 428 ALA TRP PRO ASP HIS LYS ARG GLU CYS LYS CYS LEU LYS SEQRES 8 A 428 SER CYS LYS PRO ARG TYR PRO PRO ASP SER VAL ARG LEU SEQRES 9 A 428 LEU GLY ARG VAL VAL PHE LYS LEU MET ASP GLY ALA PRO SEQRES 10 A 428 SER GLU SER GLU LYS LEU TYR SER PHE TYR ASP LEU GLU SEQRES 11 A 428 SER ASN ILE ASN LYS LEU THR GLU ASP LYS LYS GLU GLY SEQRES 12 A 428 LEU ARG GLN LEU VAL MET THR PHE GLN HIS PHE MET ARG SEQRES 13 A 428 GLU GLU ILE GLN ASP ALA SER GLN LEU PRO PRO ALA PHE SEQRES 14 A 428 ASP LEU PHE GLU ALA PHE ALA LYS VAL ILE CYS ASN SER SEQRES 15 A 428 PHE THR ILE CYS ASN ALA GLU MET GLN GLU VAL GLY VAL SEQRES 16 A 428 GLY LEU TYR PRO SER ILE SER LEU LEU ASN HIS SER CYS SEQRES 17 A 428 ASP PRO ASN CYS SER ILE VAL PHE ASN GLY PRO HIS LEU SEQRES 18 A 428 LEU LEU ARG ALA VAL ARG ASP ILE GLU VAL GLY GLU GLU SEQRES 19 A 428 LEU THR ILE CYS TYR LEU ASP MET LEU MET THR SER GLU SEQRES 20 A 428 GLU ARG ARG LYS GLN LEU ARG ASP GLN TYR CYS PHE GLU SEQRES 21 A 428 CYS ASP CYS PHE ARG CYS GLN THR GLN ASP LYS ASP ALA SEQRES 22 A 428 ASP MET LEU THR GLY ASP GLU GLN VAL TRP LYS GLU VAL SEQRES 23 A 428 GLN GLU SER LEU LYS LYS ILE GLU GLU LEU LYS ALA HIS SEQRES 24 A 428 TRP LYS TRP GLU GLN VAL LEU ALA MET CYS GLN ALA ILE SEQRES 25 A 428 ILE SER SER ASN SER GLU ARG LEU PRO ASP ILE ASN ILE SEQRES 26 A 428 TYR GLN LEU LYS VAL LEU ASP CYS ALA MET ASP ALA CYS SEQRES 27 A 428 ILE ASN LEU GLY LEU LEU GLU GLU ALA LEU PHE TYR GLY SEQRES 28 A 428 THR ARG THR MET GLU PRO TYR ARG ILE PHE PHE PRO GLY SEQRES 29 A 428 SER HIS PRO VAL ARG GLY VAL GLN VAL MET LYS VAL GLY SEQRES 30 A 428 LYS LEU GLN LEU HIS GLN GLY MET PHE PRO GLN ALA MET SEQRES 31 A 428 LYS ASN LEU ARG LEU ALA PHE ASP ILE MET ARG VAL THR SEQRES 32 A 428 HIS GLY ARG GLU HIS SER LEU ILE GLU ASP LEU ILE LEU SEQRES 33 A 428 LEU LEU GLU GLU CYS ASP ALA ASN ILE ARG ALA SER HET ZN A 501 1 HET ZN A 502 1 HET ZN A 503 1 HET SAM A 504 27 HET 4ZX A 505 39 HETNAM ZN ZINC ION HETNAM SAM S-ADENOSYLMETHIONINE HETNAM 4ZX 6-CHLORANYL-2-OXIDANYLIDENE-N-[(1S,5R)-8-[4- HETNAM 2 4ZX [(PHENYLMETHYL)AMINO]PIPERIDIN-1-YL]SULFONYL-8- HETNAM 3 4ZX AZABICYCLO[3.2.1]OCTAN-3-YL]-1,3-DIHYDROINDOLE-5- HETNAM 4 4ZX CARBOXAMIDE FORMUL 2 ZN 3(ZN 2+) FORMUL 5 SAM C15 H22 N6 O5 S FORMUL 6 4ZX C28 H34 CL N5 O4 S FORMUL 7 HOH *123(H2 O) HELIX 1 AA1 SER A 72 LYS A 94 1 23 HELIX 2 AA2 PRO A 99 GLY A 115 1 17 HELIX 3 AA3 SER A 118 LYS A 122 5 5 HELIX 4 AA4 SER A 125 LEU A 129 5 5 HELIX 5 AA5 ASN A 132 LEU A 136 5 5 HELIX 6 AA6 THR A 137 MET A 155 1 19 HELIX 7 AA7 ASP A 161 LEU A 165 5 5 HELIX 8 AA8 ASP A 170 ASN A 181 1 12 HELIX 9 AA9 SER A 200 LEU A 204 5 5 HELIX 10 AB1 THR A 245 CYS A 258 1 14 HELIX 11 AB2 CYS A 263 GLN A 269 1 7 HELIX 12 AB3 LYS A 271 LEU A 276 1 6 HELIX 13 AB4 ASP A 279 HIS A 299 1 21 HELIX 14 AB5 LYS A 301 SER A 314 1 14 HELIX 15 AB6 ASN A 324 LEU A 341 1 18 HELIX 16 AB7 LEU A 343 THR A 354 1 12 HELIX 17 AB8 THR A 354 PHE A 362 1 9 HELIX 18 AB9 HIS A 366 HIS A 382 1 17 HELIX 19 AC1 MET A 385 HIS A 404 1 20 HELIX 20 AC2 HIS A 408 ILE A 425 1 18 SHEET 1 AA1 2 VAL A 6 ALA A 10 0 SHEET 2 AA1 2 ASN A 16 ALA A 20 -1 O GLY A 17 N PHE A 9 SHEET 1 AA2 3 LEU A 29 SER A 33 0 SHEET 2 AA2 3 HIS A 220 ALA A 225 -1 O LEU A 223 N LEU A 30 SHEET 3 AA2 3 CYS A 212 ASN A 217 -1 N ASN A 217 O HIS A 220 SHEET 1 AA3 3 ALA A 37 VAL A 40 0 SHEET 2 AA3 3 GLU A 192 LEU A 197 -1 O VAL A 195 N THR A 39 SHEET 3 AA3 3 SER A 182 CYS A 186 -1 N PHE A 183 O GLY A 196 SHEET 1 AA4 2 MET A 60 ARG A 61 0 SHEET 2 AA4 2 LYS A 69 TYR A 70 -1 O TYR A 70 N MET A 60 SHEET 1 AA5 2 ASN A 205 HIS A 206 0 SHEET 2 AA5 2 THR A 236 ILE A 237 1 O ILE A 237 N ASN A 205 LINK SG CYS A 49 ZN ZN A 501 1555 1555 2.30 LINK SG CYS A 52 ZN ZN A 501 1555 1555 2.32 LINK SG CYS A 62 ZN ZN A 503 1555 1555 2.32 LINK SG CYS A 65 ZN ZN A 503 1555 1555 2.33 LINK SG CYS A 71 ZN ZN A 501 1555 1555 2.33 LINK SG CYS A 75 ZN ZN A 501 1555 1555 2.33 LINK NE2 HIS A 83 ZN ZN A 503 1555 1555 2.08 LINK SG CYS A 87 ZN ZN A 503 1555 1555 2.32 LINK SG CYS A 208 ZN ZN A 502 1555 1555 2.34 LINK SG CYS A 261 ZN ZN A 502 1555 1555 2.33 LINK SG CYS A 263 ZN ZN A 502 1555 1555 2.31 LINK SG CYS A 266 ZN ZN A 502 1555 1555 2.33 CISPEP 1 LYS A 94 PRO A 95 0 6.12 SITE 1 AC1 4 CYS A 49 CYS A 52 CYS A 71 CYS A 75 SITE 1 AC2 4 CYS A 208 CYS A 261 CYS A 263 CYS A 266 SITE 1 AC3 4 CYS A 62 CYS A 65 HIS A 83 CYS A 87 SITE 1 AC4 22 ARG A 14 GLY A 15 ASN A 16 TYR A 124 SITE 2 AC4 22 ASN A 132 ASN A 181 SER A 202 LEU A 203 SITE 3 AC4 22 LEU A 204 ASN A 205 HIS A 206 TYR A 239 SITE 4 AC4 22 TYR A 257 PHE A 259 4ZX A 505 HOH A 605 SITE 5 AC4 22 HOH A 644 HOH A 645 HOH A 659 HOH A 660 SITE 6 AC4 22 HOH A 669 HOH A 688 SITE 1 AC5 23 CYS A 180 ASN A 181 SER A 182 PHE A 183 SITE 2 AC5 23 THR A 184 CYS A 186 MET A 190 GLU A 192 SITE 3 AC5 23 SER A 202 ILE A 214 ILE A 237 CYS A 238 SITE 4 AC5 23 TYR A 239 LEU A 240 ASP A 241 TYR A 257 SITE 5 AC5 23 GLU A 294 LYS A 329 ASP A 332 CYS A 333 SITE 6 AC5 23 VAL A 368 SAM A 504 HOH A 641 CRYST1 60.484 65.852 107.358 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016533 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015186 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009315 0.00000