PDB Short entry for 5CIG HEADER ELECTRON TRANSPORT-OXIDOREDUCTASE 12-JUL-15 5CIG TITLE COMPLEX OF YEAST CYTOCHROME C PEROXIDASE (W191G) WITH ISO-1 CYTOCHROME TITLE 2 C COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME C PEROXIDASE, MITOCHONDRIAL; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: UNP RESIDUES 68-361; COMPND 5 SYNONYM: CCP; COMPND 6 EC: 1.11.1.5; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: CYTOCHROME C ISO-1; COMPND 11 CHAIN: B, D; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / SOURCE 3 S288C); SOURCE 4 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 5 ORGANISM_TAXID: 559292; SOURCE 6 STRAIN: ATCC 204508 / S288C; SOURCE 7 GENE: CCP1, CCP, CPO, YKR066C; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PPSUMO; SOURCE 13 MOL_ID: 2; SOURCE 14 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / SOURCE 15 S288C); SOURCE 16 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 17 ORGANISM_TAXID: 559292; SOURCE 18 STRAIN: ATCC 204508 / S288C; SOURCE 19 GENE: CYC1, YJR048W, J1653; SOURCE 20 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 21 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 22 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 23 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 24 EXPRESSION_SYSTEM_PLASMID: PBTR-1 KEYWDS ELECTRON TRANSFER, HEME PROTEINS, ELECTRON HOPPING, MULTI-STEP KEYWDS 2 TUNNELING, PHOTOCHEMISTRY, ELECTRON TRANSPORT-OXIDOREDUCTASE KEYWDS 3 COMPLEX, ELECTRON TRANSPORT-OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR B.R.CRANE,T.M.PAYNE REVDAT 5 10-MAR-21 5CIG 1 COMPND REMARK HET HETNAM REVDAT 5 2 1 HETSYN FORMUL LINK ATOM REVDAT 4 17-OCT-18 5CIG 1 SOURCE JRNL REMARK LINK REVDAT 4 2 1 ATOM REVDAT 3 14-SEP-16 5CIG 1 JRNL REVDAT 2 07-SEP-16 5CIG 1 JRNL REVDAT 1 03-AUG-16 5CIG 0 JRNL AUTH T.M.PAYNE,E.F.YEE,B.DZIKOVSKI,B.R.CRANE JRNL TITL CONSTRAINTS ON THE RADICAL CATION CENTER OF CYTOCHROME C JRNL TITL 2 PEROXIDASE FOR ELECTRON TRANSFER FROM CYTOCHROME C. JRNL REF BIOCHEMISTRY V. 55 4807 2016 JRNL REFN ISSN 0006-2960 JRNL PMID 27499202 JRNL DOI 10.1021/ACS.BIOCHEM.6B00262 REMARK 2 REMARK 2 RESOLUTION. 2.06 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.06 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.18 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 3 NUMBER OF REFLECTIONS : 52426 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.283 REMARK 3 R VALUE (WORKING SET) : 0.282 REMARK 3 FREE R VALUE : 0.298 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.790 REMARK 3 FREE R VALUE TEST SET COUNT : 1989 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.1822 - 4.9585 0.92 3549 144 0.2444 0.2744 REMARK 3 2 4.9585 - 3.9388 0.88 3370 137 0.2333 0.2184 REMARK 3 3 3.9388 - 3.4418 0.91 3464 137 0.2526 0.2745 REMARK 3 4 3.4418 - 3.1275 0.94 3564 138 0.2798 0.2859 REMARK 3 5 3.1275 - 2.9036 0.96 3648 142 0.3087 0.3391 REMARK 3 6 2.9036 - 2.7325 0.97 3703 147 0.3173 0.3431 REMARK 3 7 2.7325 - 2.5957 0.98 3727 148 0.3150 0.3477 REMARK 3 8 2.5957 - 2.4828 0.98 3727 147 0.3301 0.3611 REMARK 3 9 2.4828 - 2.3873 0.99 3709 143 0.3306 0.3426 REMARK 3 10 2.3873 - 2.3049 0.98 3779 148 0.3420 0.3518 REMARK 3 11 2.3049 - 2.2329 0.98 3731 141 0.3325 0.3711 REMARK 3 12 2.2329 - 2.1691 0.98 3669 148 0.3447 0.3780 REMARK 3 13 2.1691 - 2.1120 0.98 3745 146 0.3415 0.3688 REMARK 3 14 2.1120 - 2.0605 0.81 3052 123 0.3460 0.3386 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.330 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.550 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 6792 REMARK 3 ANGLE : 0.810 9216 REMARK 3 CHIRALITY : 0.024 902 REMARK 3 PLANARITY : 0.002 1196 REMARK 3 DIHEDRAL : 14.354 2472 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5CIG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1000211671. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-OCT-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.8-5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9778 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52508 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : 0.12100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.09 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : 0.46000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350 15-15%, 100 MM NAACETATE, 175 REMARK 280 MM NACL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 58.55450 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 309 O HOH B 331 1.86 REMARK 500 O HOH A 518 O HOH A 539 1.87 REMARK 500 SG CYS B 14 CBB HEC B 201 1.88 REMARK 500 O HOH B 341 O HOH B 342 1.91 REMARK 500 SG CYS D 14 CBB HEC D 201 1.93 REMARK 500 O GLY C 121 O HOH C 401 1.95 REMARK 500 O HOH C 457 O HOH C 458 1.98 REMARK 500 O HOH A 409 O HOH A 441 1.99 REMARK 500 O PRO C 80 O HOH C 402 1.99 REMARK 500 OG SER A 15 O HOH A 401 2.03 REMARK 500 O GLY A 111 O HOH A 402 2.03 REMARK 500 NE2 HIS A 52 O HOH A 403 2.03 REMARK 500 O GLY D 83 O HOH D 301 2.03 REMARK 500 OD1 ASN C 219 O HOH C 403 2.04 REMARK 500 O PHE B 36 O HOH B 301 2.04 REMARK 500 O PRO A 80 O HOH A 404 2.05 REMARK 500 OD2 ASP C 150 O HOH C 404 2.06 REMARK 500 O HOH B 317 O HOH B 339 2.07 REMARK 500 OE1 GLU A 267 O HOH A 405 2.10 REMARK 500 ND2 ASN C 184 O HOH C 405 2.11 REMARK 500 O HOH A 416 O HOH A 523 2.11 REMARK 500 N ARG B 38 O HOH B 302 2.11 REMARK 500 OG SER C 246 O HOH C 406 2.12 REMARK 500 SG CYS D 17 CBC HEC D 201 2.13 REMARK 500 NH1 ARG B 38 O HOH B 303 2.13 REMARK 500 O HOH A 473 O HOH A 521 2.14 REMARK 500 O HIS C 60 O HOH C 407 2.14 REMARK 500 O LEU C 294 O HOH C 408 2.15 REMARK 500 OE2 GLU A 76 O HOH A 406 2.15 REMARK 500 OH TYR D 67 O HOH D 302 2.15 REMARK 500 O HOH B 303 O HOH B 334 2.16 REMARK 500 O HOH A 539 O HOH A 542 2.16 REMARK 500 OE2 GLU A 209 O HOH A 407 2.17 REMARK 500 OD1 ASN C 196 O HOH C 409 2.18 REMARK 500 O HOH A 490 O HOH A 524 2.18 REMARK 500 O GLN B 16 O HOH B 304 2.18 REMARK 500 O GLU A 35 O HOH A 408 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH C 448 O HOH D 321 2444 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 2 139.95 65.76 REMARK 500 ASN A 216 -169.22 -79.06 REMARK 500 LYS B -2 -112.67 -77.35 REMARK 500 LYS B 27 -127.86 -107.33 REMARK 500 THR C 2 157.20 65.10 REMARK 500 PRO C 3 122.08 -36.34 REMARK 500 SER C 15 -162.64 -118.35 REMARK 500 ASN C 196 19.06 -147.41 REMARK 500 PRO C 277 -167.80 -68.61 REMARK 500 ALA D -1 99.00 -64.33 REMARK 500 CYS D 14 -33.30 -132.59 REMARK 500 LYS D 27 -129.48 -134.59 REMARK 500 ASN D 56 94.76 -62.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC A 301 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 175 NE2 REMARK 620 2 HEC A 301 NA 98.2 REMARK 620 3 HEC A 301 NB 90.5 89.0 REMARK 620 4 HEC A 301 NC 91.4 169.9 88.1 REMARK 620 5 HEC A 301 ND 105.3 89.2 164.1 90.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC B 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 18 NE2 REMARK 620 2 HEC B 201 NA 101.5 REMARK 620 3 HEC B 201 NB 81.7 89.9 REMARK 620 4 HEC B 201 NC 74.8 176.1 88.6 REMARK 620 5 HEC B 201 ND 94.1 89.7 175.6 91.6 REMARK 620 6 MET B 80 SD 169.6 88.2 94.8 95.4 89.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC C 301 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 175 NE2 REMARK 620 2 HEC C 301 NA 113.3 REMARK 620 3 HEC C 301 NB 85.1 86.8 REMARK 620 4 HEC C 301 NC 90.3 155.0 87.3 REMARK 620 5 HEC C 301 ND 124.1 85.6 150.4 87.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC D 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 18 NE2 REMARK 620 2 HEC D 201 NA 81.5 REMARK 620 3 HEC D 201 NB 86.6 90.4 REMARK 620 4 HEC D 201 NC 89.3 170.7 88.5 REMARK 620 5 HEC D 201 ND 84.4 89.2 171.0 90.5 REMARK 620 6 MET D 80 SD 174.3 104.1 94.1 85.1 94.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEC A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEC B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEC C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEC D 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5CIB RELATED DB: PDB REMARK 900 RELATED ID: 5CIC RELATED DB: PDB REMARK 900 RELATED ID: 5CID RELATED DB: PDB REMARK 900 RELATED ID: 5CIE RELATED DB: PDB REMARK 900 RELATED ID: 5CIF RELATED DB: PDB REMARK 900 RELATED ID: 5CIH RELATED DB: PDB DBREF 5CIG A 1 294 UNP P00431 CCPR_YEAST 68 361 DBREF 5CIG B -5 103 UNP P00044 CYC1_YEAST 2 109 DBREF 5CIG C 1 294 UNP P00431 CCPR_YEAST 68 361 DBREF 5CIG D -5 103 UNP P00044 CYC1_YEAST 2 109 SEQADV 5CIG ILE A 53 UNP P00431 THR 120 VARIANT SEQADV 5CIG GLY A 152 UNP P00431 ASP 219 VARIANT SEQADV 5CIG GLY A 191 UNP P00431 TRP 258 ENGINEERED MUTATION SEQADV 5CIG ILE C 53 UNP P00431 THR 120 VARIANT SEQADV 5CIG GLY C 152 UNP P00431 ASP 219 VARIANT SEQADV 5CIG GLY C 191 UNP P00431 TRP 258 ENGINEERED MUTATION SEQRES 1 A 294 THR THR PRO LEU VAL HIS VAL ALA SER VAL GLU LYS GLY SEQRES 2 A 294 ARG SER TYR GLU ASP PHE GLN LYS VAL TYR ASN ALA ILE SEQRES 3 A 294 ALA LEU LYS LEU ARG GLU ASP ASP GLU TYR ASP ASN TYR SEQRES 4 A 294 ILE GLY TYR GLY PRO VAL LEU VAL ARG LEU ALA TRP HIS SEQRES 5 A 294 ILE SER GLY THR TRP ASP LYS HIS ASP ASN THR GLY GLY SEQRES 6 A 294 SER TYR GLY GLY THR TYR ARG PHE LYS LYS GLU PHE ASN SEQRES 7 A 294 ASP PRO SER ASN ALA GLY LEU GLN ASN GLY PHE LYS PHE SEQRES 8 A 294 LEU GLU PRO ILE HIS LYS GLU PHE PRO TRP ILE SER SER SEQRES 9 A 294 GLY ASP LEU PHE SER LEU GLY GLY VAL THR ALA VAL GLN SEQRES 10 A 294 GLU MET GLN GLY PRO LYS ILE PRO TRP ARG CYS GLY ARG SEQRES 11 A 294 VAL ASP THR PRO GLU ASP THR THR PRO ASP ASN GLY ARG SEQRES 12 A 294 LEU PRO ASP ALA ASP LYS ASP ALA GLY TYR VAL ARG THR SEQRES 13 A 294 PHE PHE GLN ARG LEU ASN MET ASN ASP ARG GLU VAL VAL SEQRES 14 A 294 ALA LEU MET GLY ALA HIS ALA LEU GLY LYS THR HIS LEU SEQRES 15 A 294 LYS ASN SER GLY TYR GLU GLY PRO GLY GLY ALA ALA ASN SEQRES 16 A 294 ASN VAL PHE THR ASN GLU PHE TYR LEU ASN LEU LEU ASN SEQRES 17 A 294 GLU ASP TRP LYS LEU GLU LYS ASN ASP ALA ASN ASN GLU SEQRES 18 A 294 GLN TRP ASP SER LYS SER GLY TYR MET MET LEU PRO THR SEQRES 19 A 294 ASP TYR SER LEU ILE GLN ASP PRO LYS TYR LEU SER ILE SEQRES 20 A 294 VAL LYS GLU TYR ALA ASN ASP GLN ASP LYS PHE PHE LYS SEQRES 21 A 294 ASP PHE SER LYS ALA PHE GLU LYS LEU LEU GLU ASN GLY SEQRES 22 A 294 ILE THR PHE PRO LYS ASP ALA PRO SER PRO PHE ILE PHE SEQRES 23 A 294 LYS THR LEU GLU GLU GLN GLY LEU SEQRES 1 B 108 THR GLU PHE LYS ALA GLY SER ALA LYS LYS GLY ALA THR SEQRES 2 B 108 LEU PHE LYS THR ARG CYS LEU GLN CYS HIS THR VAL GLU SEQRES 3 B 108 LYS GLY GLY PRO HIS LYS VAL GLY PRO ASN LEU HIS GLY SEQRES 4 B 108 ILE PHE GLY ARG HIS SER GLY GLN ALA GLU GLY TYR SER SEQRES 5 B 108 TYR THR ASP ALA ASN ILE LYS LYS ASN VAL LEU TRP ASP SEQRES 6 B 108 GLU ASN ASN MET SER GLU TYR LEU THR ASN PRO LYS LYS SEQRES 7 B 108 TYR ILE PRO GLY THR LYS MET ALA PHE GLY GLY LEU LYS SEQRES 8 B 108 LYS GLU LYS ASP ARG ASN ASP LEU ILE THR TYR LEU LYS SEQRES 9 B 108 LYS ALA CYS GLU SEQRES 1 C 294 THR THR PRO LEU VAL HIS VAL ALA SER VAL GLU LYS GLY SEQRES 2 C 294 ARG SER TYR GLU ASP PHE GLN LYS VAL TYR ASN ALA ILE SEQRES 3 C 294 ALA LEU LYS LEU ARG GLU ASP ASP GLU TYR ASP ASN TYR SEQRES 4 C 294 ILE GLY TYR GLY PRO VAL LEU VAL ARG LEU ALA TRP HIS SEQRES 5 C 294 ILE SER GLY THR TRP ASP LYS HIS ASP ASN THR GLY GLY SEQRES 6 C 294 SER TYR GLY GLY THR TYR ARG PHE LYS LYS GLU PHE ASN SEQRES 7 C 294 ASP PRO SER ASN ALA GLY LEU GLN ASN GLY PHE LYS PHE SEQRES 8 C 294 LEU GLU PRO ILE HIS LYS GLU PHE PRO TRP ILE SER SER SEQRES 9 C 294 GLY ASP LEU PHE SER LEU GLY GLY VAL THR ALA VAL GLN SEQRES 10 C 294 GLU MET GLN GLY PRO LYS ILE PRO TRP ARG CYS GLY ARG SEQRES 11 C 294 VAL ASP THR PRO GLU ASP THR THR PRO ASP ASN GLY ARG SEQRES 12 C 294 LEU PRO ASP ALA ASP LYS ASP ALA GLY TYR VAL ARG THR SEQRES 13 C 294 PHE PHE GLN ARG LEU ASN MET ASN ASP ARG GLU VAL VAL SEQRES 14 C 294 ALA LEU MET GLY ALA HIS ALA LEU GLY LYS THR HIS LEU SEQRES 15 C 294 LYS ASN SER GLY TYR GLU GLY PRO GLY GLY ALA ALA ASN SEQRES 16 C 294 ASN VAL PHE THR ASN GLU PHE TYR LEU ASN LEU LEU ASN SEQRES 17 C 294 GLU ASP TRP LYS LEU GLU LYS ASN ASP ALA ASN ASN GLU SEQRES 18 C 294 GLN TRP ASP SER LYS SER GLY TYR MET MET LEU PRO THR SEQRES 19 C 294 ASP TYR SER LEU ILE GLN ASP PRO LYS TYR LEU SER ILE SEQRES 20 C 294 VAL LYS GLU TYR ALA ASN ASP GLN ASP LYS PHE PHE LYS SEQRES 21 C 294 ASP PHE SER LYS ALA PHE GLU LYS LEU LEU GLU ASN GLY SEQRES 22 C 294 ILE THR PHE PRO LYS ASP ALA PRO SER PRO PHE ILE PHE SEQRES 23 C 294 LYS THR LEU GLU GLU GLN GLY LEU SEQRES 1 D 108 THR GLU PHE LYS ALA GLY SER ALA LYS LYS GLY ALA THR SEQRES 2 D 108 LEU PHE LYS THR ARG CYS LEU GLN CYS HIS THR VAL GLU SEQRES 3 D 108 LYS GLY GLY PRO HIS LYS VAL GLY PRO ASN LEU HIS GLY SEQRES 4 D 108 ILE PHE GLY ARG HIS SER GLY GLN ALA GLU GLY TYR SER SEQRES 5 D 108 TYR THR ASP ALA ASN ILE LYS LYS ASN VAL LEU TRP ASP SEQRES 6 D 108 GLU ASN ASN MET SER GLU TYR LEU THR ASN PRO LYS LYS SEQRES 7 D 108 TYR ILE PRO GLY THR LYS MET ALA PHE GLY GLY LEU LYS SEQRES 8 D 108 LYS GLU LYS ASP ARG ASN ASP LEU ILE THR TYR LEU LYS SEQRES 9 D 108 LYS ALA CYS GLU HET HEC A 301 43 HET HEC B 201 43 HET HEC C 301 43 HET HEC D 201 43 HETNAM HEC HEME C FORMUL 5 HEC 4(C34 H34 FE N4 O4) FORMUL 9 HOH *324(H2 O) HELIX 1 AA1 SER A 15 ASP A 33 1 19 HELIX 2 AA2 GLU A 35 ILE A 40 1 6 HELIX 3 AA3 TYR A 42 GLY A 55 1 14 HELIX 4 AA4 GLY A 69 ARG A 72 5 4 HELIX 5 AA5 PHE A 73 ASN A 78 1 6 HELIX 6 AA6 ASP A 79 ALA A 83 5 5 HELIX 7 AA7 LEU A 85 PHE A 99 1 15 HELIX 8 AA8 SER A 103 MET A 119 1 17 HELIX 9 AA9 PRO A 134 THR A 138 5 5 HELIX 10 AB1 ASP A 150 PHE A 158 1 9 HELIX 11 AB2 GLN A 159 ASN A 162 5 4 HELIX 12 AB3 ASN A 164 GLY A 173 1 10 HELIX 13 AB4 ALA A 174 LEU A 177 5 4 HELIX 14 AB5 ASN A 200 GLU A 209 1 10 HELIX 15 AB6 LEU A 232 SER A 237 1 6 HELIX 16 AB7 ASP A 241 ASP A 254 1 14 HELIX 17 AB8 ASP A 254 ASN A 272 1 19 HELIX 18 AB9 LEU A 289 GLY A 293 5 5 HELIX 19 AC1 SER B 2 CYS B 14 1 13 HELIX 20 AC2 THR B 49 ASN B 56 1 8 HELIX 21 AC3 ASP B 60 ASN B 70 1 11 HELIX 22 AC4 ASN B 70 ILE B 75 1 6 HELIX 23 AC5 LYS B 87 CYS B 102 1 16 HELIX 24 AC6 SER C 15 ASP C 33 1 19 HELIX 25 AC7 GLU C 35 ILE C 40 1 6 HELIX 26 AC8 TYR C 42 GLY C 55 1 14 HELIX 27 AC9 GLY C 69 ARG C 72 5 4 HELIX 28 AD1 PHE C 73 ASN C 78 1 6 HELIX 29 AD2 ASP C 79 ALA C 83 5 5 HELIX 30 AD3 LEU C 85 PHE C 99 1 15 HELIX 31 AD4 SER C 103 MET C 119 1 17 HELIX 32 AD5 PRO C 134 THR C 138 5 5 HELIX 33 AD6 ASP C 150 PHE C 158 1 9 HELIX 34 AD7 GLN C 159 ASN C 162 5 4 HELIX 35 AD8 ASN C 164 MET C 172 1 9 HELIX 36 AD9 GLY C 173 LEU C 177 5 5 HELIX 37 AE1 HIS C 181 GLY C 186 1 6 HELIX 38 AE2 ASN C 200 GLU C 209 1 10 HELIX 39 AE3 LEU C 232 SER C 237 1 6 HELIX 40 AE4 ASP C 241 ASP C 254 1 14 HELIX 41 AE5 ASP C 254 ASN C 272 1 19 HELIX 42 AE6 THR C 288 GLY C 293 1 6 HELIX 43 AE7 SER D 2 CYS D 14 1 13 HELIX 44 AE8 THR D 49 LYS D 54 1 6 HELIX 45 AE9 ASP D 60 ASN D 70 1 11 HELIX 46 AF1 ASN D 70 ILE D 75 1 6 HELIX 47 AF2 LYS D 87 CYS D 102 1 16 SHEET 1 AA1 2 HIS A 6 VAL A 7 0 SHEET 2 AA1 2 ILE A 274 THR A 275 1 O THR A 275 N HIS A 6 SHEET 1 AA2 2 LYS A 179 THR A 180 0 SHEET 2 AA2 2 GLY A 189 PRO A 190 -1 O GLY A 189 N THR A 180 SHEET 1 AA3 3 TRP A 211 LYS A 215 0 SHEET 2 AA3 3 GLU A 221 SER A 225 -1 O GLN A 222 N GLU A 214 SHEET 3 AA3 3 MET A 230 MET A 231 -1 O MET A 231 N TRP A 223 SHEET 1 AA4 2 HIS C 6 VAL C 7 0 SHEET 2 AA4 2 ILE C 274 THR C 275 1 O THR C 275 N HIS C 6 SHEET 1 AA5 2 LYS C 179 THR C 180 0 SHEET 2 AA5 2 GLY C 189 PRO C 190 -1 O GLY C 189 N THR C 180 SHEET 1 AA6 3 LYS C 212 LYS C 215 0 SHEET 2 AA6 3 GLU C 221 ASP C 224 -1 O GLN C 222 N GLU C 214 SHEET 3 AA6 3 MET C 230 MET C 231 -1 O MET C 231 N TRP C 223 LINK SG CYS B 14 CAB HEC B 201 1555 1555 2.00 LINK SG CYS B 17 CAC HEC B 201 1555 1555 2.00 LINK SG CYS D 14 CAB HEC D 201 1555 1555 2.00 LINK SG CYS D 17 CAC HEC D 201 1555 1555 2.00 LINK NE2 HIS A 175 FE HEC A 301 1555 1555 2.04 LINK NE2 HIS B 18 FE HEC B 201 1555 1555 2.00 LINK SD MET B 80 FE HEC B 201 1555 1555 2.25 LINK NE2 HIS C 175 FE HEC C 301 1555 1555 2.06 LINK NE2 HIS D 18 FE HEC D 201 1555 1555 1.99 LINK SD MET D 80 FE HEC D 201 1555 1555 2.24 SITE 1 AC1 19 PRO A 44 VAL A 45 VAL A 47 ARG A 48 SITE 2 AC1 19 TRP A 51 PRO A 145 ASP A 146 PHE A 158 SITE 3 AC1 19 MET A 172 ALA A 174 HIS A 175 GLY A 178 SITE 4 AC1 19 LYS A 179 THR A 180 HIS A 181 ASN A 184 SITE 5 AC1 19 SER A 185 PHE A 266 HOH A 432 SITE 1 AC2 21 ALA A 193 ARG B 13 CYS B 14 CYS B 17 SITE 2 AC2 21 HIS B 18 VAL B 28 LEU B 32 ILE B 35 SITE 3 AC2 21 SER B 40 GLY B 41 TYR B 46 TYR B 48 SITE 4 AC2 21 THR B 49 ASN B 52 TRP B 59 LEU B 68 SITE 5 AC2 21 THR B 78 LYS B 79 MET B 80 LEU B 94 SITE 6 AC2 21 HOH B 311 SITE 1 AC3 17 PRO C 44 ARG C 48 TRP C 51 PRO C 145 SITE 2 AC3 17 ALA C 147 MET C 172 HIS C 175 GLY C 178 SITE 3 AC3 17 LYS C 179 THR C 180 HIS C 181 ASN C 184 SITE 4 AC3 17 SER C 185 PHE C 266 HOH C 412 HOH C 449 SITE 5 AC3 17 HOH C 465 SITE 1 AC4 25 PHE D 10 ARG D 13 LEU D 15 GLN D 16 SITE 2 AC4 25 CYS D 17 HIS D 18 VAL D 28 GLY D 29 SITE 3 AC4 25 PRO D 30 LEU D 32 ILE D 35 SER D 40 SITE 4 AC4 25 GLY D 41 TYR D 46 TYR D 48 THR D 49 SITE 5 AC4 25 ASN D 52 TRP D 59 MET D 64 LEU D 68 SITE 6 AC4 25 THR D 78 LYS D 79 MET D 80 LEU D 94 SITE 7 AC4 25 HOH D 302 CRYST1 45.380 117.109 88.929 90.00 105.06 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022036 0.000000 0.005930 0.00000 SCALE2 0.000000 0.008539 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011645 0.00000