PDB Short entry for 5CR6 HEADER TOXIN 22-JUL-15 5CR6 TITLE STRUCTURE OF PNEUMOLYSIN AT 1.98 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PNEUMOLYSIN; COMPND 3 CHAIN: D; COMPND 4 SYNONYM: THIOL-ACTIVATED CYTOLYSIN; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 1313; SOURCE 4 GENE: PLY, SPD_1726; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS TOXIN, CHOLESTEROL-DEPENDENT CYTOLYSIN, VIRULENCE FACTOR, KEYWDS 2 STREPTOCOCCUS PNEUMONIAE EXPDTA X-RAY DIFFRACTION AUTHOR J.E.MARSHALL,B.H.A.FARAJ,A.R.GINGRAS,R.LONNEN,M.A.SHEIKH,M.EL- AUTHOR 2 MEZGUELDI,P.C.E.MOODY,P.W.ANDREW,R.WALLIS REVDAT 3 10-JAN-24 5CR6 1 REMARK REVDAT 2 30-AUG-17 5CR6 1 SHEET REVDAT 1 16-SEP-15 5CR6 0 JRNL AUTH J.E.MARSHALL,B.H.FARAJ,A.R.GINGRAS,R.LONNEN,M.A.SHEIKH, JRNL AUTH 2 M.EL-MEZGUELDI,P.C.MOODY,P.W.ANDREW,R.WALLIS JRNL TITL THE CRYSTAL STRUCTURE OF PNEUMOLYSIN AT 2.0 ANGSTROM JRNL TITL 2 RESOLUTION REVEALS THE MOLECULAR PACKING OF THE PRE-PORE JRNL TITL 3 COMPLEX. JRNL REF SCI REP V. 5 13293 2015 JRNL REFN ESSN 2045-2322 JRNL PMID 26333773 JRNL DOI 10.1038/SREP13293 REMARK 2 REMARK 2 RESOLUTION. 1.98 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.98 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.07 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 42739 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.249 REMARK 3 R VALUE (WORKING SET) : 0.249 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 2154 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.0814 - 4.8810 0.98 2950 143 0.2162 0.2196 REMARK 3 2 4.8810 - 3.8750 1.00 2767 149 0.2068 0.2046 REMARK 3 3 3.8750 - 3.3854 1.00 2779 132 0.2317 0.2245 REMARK 3 4 3.3854 - 3.0760 1.00 2756 160 0.2537 0.2721 REMARK 3 5 3.0760 - 2.8555 0.98 2679 138 0.2726 0.3283 REMARK 3 6 2.8555 - 2.6872 1.00 2675 139 0.2853 0.3070 REMARK 3 7 2.6872 - 2.5526 1.00 2746 142 0.2795 0.3275 REMARK 3 8 2.5526 - 2.4415 1.00 2636 157 0.2938 0.3314 REMARK 3 9 2.4415 - 2.3475 1.00 2737 132 0.2956 0.3437 REMARK 3 10 2.3475 - 2.2665 1.00 2635 144 0.2957 0.3181 REMARK 3 11 2.2665 - 2.1957 0.99 2692 165 0.3128 0.3780 REMARK 3 12 2.1957 - 2.1329 1.00 2633 168 0.2929 0.3334 REMARK 3 13 2.1329 - 2.0768 0.96 2503 129 0.3091 0.3482 REMARK 3 14 2.0768 - 2.0261 0.99 2724 131 0.2996 0.2958 REMARK 3 15 2.0261 - 1.9800 0.99 2673 125 0.2938 0.3049 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.870 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 69.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 3786 REMARK 3 ANGLE : 0.803 5146 REMARK 3 CHIRALITY : 0.030 588 REMARK 3 PLANARITY : 0.003 665 REMARK 3 DIHEDRAL : 13.795 1393 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN D AND (RESID 1:21 OR RESID 207:226 OR RESID REMARK 3 336:343) REMARK 3 ORIGIN FOR THE GROUP (A): 8.6694 17.4068 160.5499 REMARK 3 T TENSOR REMARK 3 T11: 3.0502 T22: 0.8192 REMARK 3 T33: 0.6976 T12: -0.1108 REMARK 3 T13: 0.3394 T23: -0.0197 REMARK 3 L TENSOR REMARK 3 L11: 0.1399 L22: 0.3583 REMARK 3 L33: 0.5634 L12: -0.0257 REMARK 3 L13: -0.1977 L23: -0.2906 REMARK 3 S TENSOR REMARK 3 S11: 0.2197 S12: 0.1274 S13: 0.0437 REMARK 3 S21: -0.7490 S22: -0.1144 S23: -0.0464 REMARK 3 S31: -0.3199 S32: -0.1661 S33: -0.1592 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN D AND (RESID 22:33) REMARK 3 ORIGIN FOR THE GROUP (A): 2.2364 35.9321 193.0426 REMARK 3 T TENSOR REMARK 3 T11: 2.0326 T22: 1.1090 REMARK 3 T33: 0.9624 T12: -0.0803 REMARK 3 T13: 0.0835 T23: 0.0723 REMARK 3 L TENSOR REMARK 3 L11: 1.7329 L22: 0.1970 REMARK 3 L33: 4.9110 L12: -0.3576 REMARK 3 L13: -1.0649 L23: -0.4992 REMARK 3 S TENSOR REMARK 3 S11: -0.1344 S12: -0.6056 S13: 0.3992 REMARK 3 S21: -0.7725 S22: 0.3791 S23: -0.3648 REMARK 3 S31: -0.6836 S32: 0.1712 S33: -0.3173 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN D AND (RESID 57:101 OR RESID 112:119 OR RESID REMARK 3 201:206 OR RESID 227:241 OR RESID 329:335) REMARK 3 ORIGIN FOR THE GROUP (A): 3.2041 10.3102 171.4154 REMARK 3 T TENSOR REMARK 3 T11: 2.2847 T22: 0.3363 REMARK 3 T33: 0.6317 T12: -0.0367 REMARK 3 T13: -0.0163 T23: -0.0404 REMARK 3 L TENSOR REMARK 3 L11: 0.2330 L22: 1.1794 REMARK 3 L33: 0.0793 L12: 0.1943 REMARK 3 L13: -0.0976 L23: -0.1155 REMARK 3 S TENSOR REMARK 3 S11: 0.0221 S12: 0.1182 S13: -0.2180 REMARK 3 S21: -0.8328 S22: -0.1052 S23: 0.2986 REMARK 3 S31: -0.4773 S32: -0.3138 S33: 0.0048 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN D AND (RESID 34:56 OR RESID 344:360) REMARK 3 ORIGIN FOR THE GROUP (A): 2.6719 29.4374 206.1751 REMARK 3 T TENSOR REMARK 3 T11: 1.1049 T22: 0.6988 REMARK 3 T33: 0.4466 T12: 0.0277 REMARK 3 T13: -0.0031 T23: -0.1028 REMARK 3 L TENSOR REMARK 3 L11: 1.9056 L22: 0.3093 REMARK 3 L33: 3.5573 L12: -0.1580 REMARK 3 L13: 0.5466 L23: 0.9249 REMARK 3 S TENSOR REMARK 3 S11: -0.2086 S12: -0.7131 S13: 0.0528 REMARK 3 S21: -0.9941 S22: 0.2374 S23: -0.1735 REMARK 3 S31: -0.2744 S32: -0.4364 S33: 0.0451 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN D AND (RESID 253:284 OR RESID 306:328) REMARK 3 ORIGIN FOR THE GROUP (A): 3.0149 5.5663 205.6437 REMARK 3 T TENSOR REMARK 3 T11: 0.6057 T22: 0.6371 REMARK 3 T33: 0.4426 T12: -0.0041 REMARK 3 T13: -0.0576 T23: 0.1460 REMARK 3 L TENSOR REMARK 3 L11: 2.5034 L22: 5.8474 REMARK 3 L33: 4.3889 L12: -0.3561 REMARK 3 L13: -0.6527 L23: 2.2750 REMARK 3 S TENSOR REMARK 3 S11: -0.1082 S12: -0.8536 S13: -0.4521 REMARK 3 S21: 0.6804 S22: 0.1211 S23: -0.2746 REMARK 3 S31: 0.8423 S32: -0.2521 S33: -0.0376 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN D AND (RESID 102:111 OR RESID 120:145 OR RESID REMARK 3 155:189) REMARK 3 ORIGIN FOR THE GROUP (A): 2.0306 5.9450 187.7258 REMARK 3 T TENSOR REMARK 3 T11: 0.6445 T22: 0.4395 REMARK 3 T33: 0.4162 T12: -0.0647 REMARK 3 T13: -0.0464 T23: 0.0153 REMARK 3 L TENSOR REMARK 3 L11: 0.6263 L22: 3.7239 REMARK 3 L33: 1.7841 L12: -0.3532 REMARK 3 L13: 0.6497 L23: 1.1444 REMARK 3 S TENSOR REMARK 3 S11: -0.0067 S12: -0.2079 S13: -0.1275 REMARK 3 S21: -1.1282 S22: 0.0967 S23: 0.0251 REMARK 3 S31: -0.4958 S32: -0.3132 S33: -0.0521 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN D AND (RESID 361:471) REMARK 3 ORIGIN FOR THE GROUP (A): 10.6085 33.5932 239.6816 REMARK 3 T TENSOR REMARK 3 T11: 0.1567 T22: 0.4643 REMARK 3 T33: 0.2779 T12: 0.0865 REMARK 3 T13: 0.0243 T23: 0.0221 REMARK 3 L TENSOR REMARK 3 L11: 1.2580 L22: 1.8270 REMARK 3 L33: 4.4560 L12: -0.2423 REMARK 3 L13: 0.8238 L23: -0.0285 REMARK 3 S TENSOR REMARK 3 S11: 0.0751 S12: -0.0199 S13: -0.0589 REMARK 3 S21: -0.3556 S22: 0.0068 S23: -0.0326 REMARK 3 S31: -0.3839 S32: -0.9127 S33: -0.0752 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN D AND (RESID 146:154 OR RESID 190:200 OR RESID REMARK 3 242:252 OR RESID 285:305) REMARK 3 ORIGIN FOR THE GROUP (A): 0.3705 7.1782 195.0538 REMARK 3 T TENSOR REMARK 3 T11: 0.3269 T22: 0.4832 REMARK 3 T33: 0.3707 T12: -0.0751 REMARK 3 T13: -0.0807 T23: 0.0304 REMARK 3 L TENSOR REMARK 3 L11: 1.9438 L22: 7.0716 REMARK 3 L33: 6.9472 L12: -0.8971 REMARK 3 L13: -0.9767 L23: 3.8196 REMARK 3 S TENSOR REMARK 3 S11: -0.0121 S12: -0.3155 S13: -0.3255 REMARK 3 S21: -0.4633 S22: -0.0240 S23: 0.2592 REMARK 3 S31: 0.0748 S32: -0.7957 S33: 0.0002 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5CR6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1000212070. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JAN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42799 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.940 REMARK 200 RESOLUTION RANGE LOW (A) : 43.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04400 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 39.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.94 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.99 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.46100 REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.840 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1S3R REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.81 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM TRIS/BICINE PH 8.5 CONTAINING REMARK 280 30 MM CACL2 30 MM MGCL2, 20% GLYCEROL, 14% PEG 4K, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 13.50300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 86.14250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 63.85500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 86.14250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 13.50300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 63.85500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY D 294 REMARK 465 ASP D 295 REMARK 465 PRO D 296 REMARK 465 SER D 297 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET D 1 CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH D 520 O HOH D 545 1.85 REMARK 500 O HOH D 539 O HOH D 561 1.90 REMARK 500 O HOH D 665 O HOH D 692 1.91 REMARK 500 O GLN D 215 O HOH D 501 1.93 REMARK 500 O HOH D 529 O HOH D 681 1.96 REMARK 500 O HOH D 690 O HOH D 691 1.97 REMARK 500 O HOH D 516 O HOH D 648 2.00 REMARK 500 O HOH D 545 O HOH D 670 2.01 REMARK 500 O LEU D 234 O HOH D 502 2.03 REMARK 500 O TYR D 384 O HOH D 503 2.04 REMARK 500 O HOH D 583 O HOH D 661 2.05 REMARK 500 O LEU D 234 O HOH D 504 2.07 REMARK 500 OE1 GLU D 170 O HOH D 505 2.08 REMARK 500 O TYR D 236 O HOH D 506 2.08 REMARK 500 O PHE D 320 O HOH D 507 2.10 REMARK 500 O HOH D 589 O HOH D 644 2.13 REMARK 500 N VAL D 341 O HOH D 508 2.15 REMARK 500 O ASP D 93 O HOH D 509 2.16 REMARK 500 O SER D 238 O HOH D 510 2.16 REMARK 500 N SER D 52 O HOH D 511 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH D 656 O HOH D 669 1455 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS D 18 -19.96 69.00 REMARK 500 SER D 68 -33.86 68.56 REMARK 500 LEU D 70 41.82 -94.97 REMARK 500 VAL D 92 -87.00 -130.64 REMARK 500 TYR D 138 -50.09 -128.11 REMARK 500 HIS D 156 -38.89 -131.10 REMARK 500 GLN D 215 -164.98 -78.16 REMARK 500 THR D 217 -73.84 -130.77 REMARK 500 LEU D 223 -7.94 -57.87 REMARK 500 LYS D 224 11.19 -66.64 REMARK 500 GLN D 225 -75.82 -34.24 REMARK 500 ALA D 322 -179.23 -65.03 REMARK 500 HIS D 324 117.59 -171.43 REMARK 500 GLU D 434 72.75 -152.33 REMARK 500 REMARK 500 REMARK: NULL DBREF 5CR6 D 1 471 UNP Q04IN8 TACY_STRP2 1 471 SEQADV 5CR6 ASN D 385 UNP Q04IN8 ASP 385 ENGINEERED MUTATION SEQADV 5CR6 ALA D 428 UNP Q04IN8 CYS 428 ENGINEERED MUTATION SEQRES 1 D 471 MET ALA ASN LYS ALA VAL ASN ASP PHE ILE LEU ALA MET SEQRES 2 D 471 ASN TYR ASP LYS LYS LYS LEU LEU THR HIS GLN GLY GLU SEQRES 3 D 471 SER ILE GLU ASN ARG PHE ILE LYS GLU GLY ASN GLN LEU SEQRES 4 D 471 PRO ASP GLU PHE VAL VAL ILE GLU ARG LYS LYS ARG SER SEQRES 5 D 471 LEU SER THR ASN THR SER ASP ILE SER VAL THR ALA THR SEQRES 6 D 471 ASN ASP SER ARG LEU TYR PRO GLY ALA LEU LEU VAL VAL SEQRES 7 D 471 ASP GLU THR LEU LEU GLU ASN ASN PRO THR LEU LEU ALA SEQRES 8 D 471 VAL ASP ARG ALA PRO MET THR TYR SER ILE ASP LEU PRO SEQRES 9 D 471 GLY LEU ALA SER SER ASP SER PHE LEU GLN VAL GLU ASP SEQRES 10 D 471 PRO SER ASN SER SER VAL ARG GLY ALA VAL ASN ASP LEU SEQRES 11 D 471 LEU ALA LYS TRP HIS GLN ASP TYR GLY GLN VAL ASN ASN SEQRES 12 D 471 VAL PRO ALA ARG MET GLN TYR GLU LYS ILE THR ALA HIS SEQRES 13 D 471 SER MET GLU GLN LEU LYS VAL LYS PHE GLY SER ASP PHE SEQRES 14 D 471 GLU LYS THR GLY ASN SER LEU ASP ILE ASP PHE ASN SER SEQRES 15 D 471 VAL HIS SER GLY GLU LYS GLN ILE GLN ILE VAL ASN PHE SEQRES 16 D 471 LYS GLN ILE TYR TYR THR VAL SER VAL ASP ALA VAL LYS SEQRES 17 D 471 ASN PRO GLY ASP VAL PHE GLN ASP THR VAL THR VAL GLU SEQRES 18 D 471 ASP LEU LYS GLN ARG GLY ILE SER ALA GLU ARG PRO LEU SEQRES 19 D 471 VAL TYR ILE SER SER VAL ALA TYR GLY ARG GLN VAL TYR SEQRES 20 D 471 LEU LYS LEU GLU THR THR SER LYS SER ASP GLU VAL GLU SEQRES 21 D 471 ALA ALA PHE GLU ALA LEU ILE LYS GLY VAL LYS VAL ALA SEQRES 22 D 471 PRO GLN THR GLU TRP LYS GLN ILE LEU ASP ASN THR GLU SEQRES 23 D 471 VAL LYS ALA VAL ILE LEU GLY GLY ASP PRO SER SER GLY SEQRES 24 D 471 ALA ARG VAL VAL THR GLY LYS VAL ASP MET VAL GLU ASP SEQRES 25 D 471 LEU ILE GLN GLU GLY SER ARG PHE THR ALA ASP HIS PRO SEQRES 26 D 471 GLY LEU PRO ILE SER TYR THR THR SER PHE LEU ARG ASP SEQRES 27 D 471 ASN VAL VAL ALA THR PHE GLN ASN SER THR ASP TYR VAL SEQRES 28 D 471 GLU THR LYS VAL THR ALA TYR ARG ASN GLY ASP LEU LEU SEQRES 29 D 471 LEU ASP HIS SER GLY ALA TYR VAL ALA GLN TYR TYR ILE SEQRES 30 D 471 THR TRP ASP GLU LEU SER TYR ASN HIS GLN GLY LYS GLU SEQRES 31 D 471 VAL LEU THR PRO LYS ALA TRP ASP ARG ASN GLY GLN ASP SEQRES 32 D 471 LEU THR ALA HIS PHE THR THR SER ILE PRO LEU LYS GLY SEQRES 33 D 471 ASN VAL ARG ASN LEU SER VAL LYS ILE ARG GLU ALA THR SEQRES 34 D 471 GLY LEU ALA TRP GLU TRP TRP ARG THR VAL TYR GLU LYS SEQRES 35 D 471 THR ASP LEU PRO LEU VAL ARG LYS ARG THR ILE SER ILE SEQRES 36 D 471 TRP GLY THR THR LEU TYR PRO GLN VAL GLU ASP LYS VAL SEQRES 37 D 471 GLU ASN ASP FORMUL 2 HOH *193(H2 O) HELIX 1 AA1 MET D 1 MET D 13 1 13 HELIX 2 AA2 ASP D 79 GLU D 84 1 6 HELIX 3 AA3 ALA D 107 ASP D 110 5 4 HELIX 4 AA4 SER D 119 TYR D 138 1 20 HELIX 5 AA5 SER D 157 GLY D 166 1 10 HELIX 6 AA6 PHE D 169 ASP D 177 1 9 HELIX 7 AA7 ASP D 179 SER D 185 1 7 HELIX 8 AA8 GLU D 221 GLY D 227 5 7 HELIX 9 AA9 GLU D 258 LYS D 268 1 11 HELIX 10 AB1 THR D 276 ASN D 284 1 9 HELIX 11 AB2 LYS D 306 ASP D 308 5 3 HELIX 12 AB3 MET D 309 GLU D 316 1 8 CISPEP 1 ALA D 406 HIS D 407 0 -7.43 CRYST1 27.006 127.710 172.285 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.037028 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007830 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005804 0.00000