PDB Short entry for 5D1M
HEADER    LIGASE                                  08-OCT-13   5D1M              
TITLE     CRYSTAL STRUCTURE OF UBCH5B IN COMPLEX WITH THE RING-U5BR FRAGMENT OF 
TITLE    2 AO7 (P199A)                                                          
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: UBIQUITIN-CONJUGATING ENZYME E2 D2;                        
COMPND   3 CHAIN: A;                                                            
COMPND   4 SYNONYM: UBIQUITIN CARRIER PROTEIN D2,UBIQUITIN-CONJUGATING ENZYME   
COMPND   5 E2(17)KB 2,UBIQUITIN-CONJUGATING ENZYME E2-17 KDA 2,UBIQUITIN-PROTEIN
COMPND   6 LIGASE D2,P53-REGULATED UBIQUITIN-CONJUGATING ENZYME 1;              
COMPND   7 EC: 6.3.2.19;                                                        
COMPND   8 ENGINEERED: YES;                                                     
COMPND   9 MOL_ID: 2;                                                           
COMPND  10 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE RNF25;                         
COMPND  11 CHAIN: B;                                                            
COMPND  12 FRAGMENT: UNP RESIDUES 126-258;                                      
COMPND  13 SYNONYM: RING FINGER PROTEIN 25;                                     
COMPND  14 EC: 6.3.2.-;                                                         
COMPND  15 ENGINEERED: YES;                                                     
COMPND  16 MUTATION: YES                                                        
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   3 ORGANISM_COMMON: HUMAN;                                              
SOURCE   4 ORGANISM_TAXID: 9606;                                                
SOURCE   5 GENE: UBE2D2, PUBC1, UBC4, UBC5B, UBCH4, UBCH5B;                     
SOURCE   6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   7 EXPRESSION_SYSTEM_TAXID: 469008;                                     
SOURCE   8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3);                                
SOURCE   9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;                              
SOURCE  10 EXPRESSION_SYSTEM_PLASMID: PETDUET;                                  
SOURCE  11 MOL_ID: 2;                                                           
SOURCE  12 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE  13 ORGANISM_COMMON: HUMAN;                                              
SOURCE  14 ORGANISM_TAXID: 9606;                                                
SOURCE  15 GENE: RNF25;                                                         
SOURCE  16 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE  17 EXPRESSION_SYSTEM_TAXID: 469008;                                     
SOURCE  18 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3);                                
SOURCE  19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;                              
SOURCE  20 EXPRESSION_SYSTEM_PLASMID: PETDUET                                   
KEYWDS    UBIQUITIN CONJUGATING ENZYME (E2), UBIQUITIN LIGASE (E3), RING        
KEYWDS   2 FINGER, UBIQUITINATION, UBIQUITIN, LIGASE                            
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    Y.-H.LIANG,S.LI,A.M.WEISSMAN,X.JI                                     
REVDAT   5   27-SEP-23 5D1M    1       REMARK                                   
REVDAT   4   30-AUG-23 5D1M    1       AUTHOR JRNL   SEQADV                     
REVDAT   3   14-MAR-18 5D1M    1       JRNL   REMARK SEQADV                     
REVDAT   2   30-DEC-15 5D1M    1       JRNL                                     
REVDAT   1   28-OCT-15 5D1M    0                                                
JRNL        AUTH   S.LI,Y.H.LIANG,J.MARIANO,M.B.METZGER,D.K.STRINGER,           
JRNL        AUTH 2 V.A.HRISTOVA,J.LI,P.A.RANDAZZO,Y.C.TSAI,X.JI,A.M.WEISSMAN    
JRNL        TITL   INSIGHTS INTO UBIQUITINATION FROM THE UNIQUE CLAMP-LIKE      
JRNL        TITL 2 BINDING OF THE RING E3 AO7 TO THE E2 UBCH5B.                 
JRNL        REF    J.BIOL.CHEM.                  V. 290 30225 2015              
JRNL        REFN                   ESSN 1083-351X                               
JRNL        PMID   26475854                                                     
JRNL        DOI    10.1074/JBC.M115.685867                                      
REMARK   2                                                                      
REMARK   2 RESOLUTION.    1.58 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : PHENIX                                               
REMARK   3   AUTHORS     : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN            
REMARK   3               : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,           
REMARK   3               : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,            
REMARK   3               : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,              
REMARK   3               : REETAL PAI,RANDY READ,JANE RICHARDSON,               
REMARK   3               : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,           
REMARK   3               : NICHOLAS SAUTER,JACOB SMITH,LAURENT                  
REMARK   3               : STORONI,TOM TERWILLIGER,PETER ZWART                  
REMARK   3                                                                      
REMARK   3    REFINEMENT TARGET : ENGH & HUBER                                  
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 1.58                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 30.40                          
REMARK   3   MIN(FOBS/SIGMA_FOBS)              : 1.340                          
REMARK   3   COMPLETENESS FOR RANGE        (%) : 95.8                           
REMARK   3   NUMBER OF REFLECTIONS             : 38983                          
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                     
REMARK   3   R VALUE     (WORKING + TEST SET) : 0.189                           
REMARK   3   R VALUE            (WORKING SET) : 0.188                           
REMARK   3   FREE R VALUE                     : 0.223                           
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : 2.570                           
REMARK   3   FREE R VALUE TEST SET COUNT      : 1000                            
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT (IN BINS).                           
REMARK   3   BIN  RESOLUTION RANGE  COMPL.    NWORK NFREE   RWORK  RFREE        
REMARK   3     1 30.4035 -  3.0236    1.00     5798   153  0.1740 0.2016        
REMARK   3     2  3.0236 -  2.4003    1.00     5667   149  0.1864 0.2386        
REMARK   3     3  2.4003 -  2.0969    1.00     5688   150  0.1909 0.2238        
REMARK   3     4  2.0969 -  1.9052    1.00     5641   148  0.1657 0.2137        
REMARK   3     5  1.9052 -  1.7687    1.00     5615   148  0.1845 0.2072        
REMARK   3     6  1.7687 -  1.6644    1.00     5624   148  0.2590 0.2786        
REMARK   3     7  1.6644 -  1.5811    0.71     3950   104  0.4085 0.4007        
REMARK   3                                                                      
REMARK   3  BULK SOLVENT MODELLING.                                             
REMARK   3   METHOD USED        : FLAT BULK SOLVENT MODEL                       
REMARK   3   SOLVENT RADIUS     : 1.11                                          
REMARK   3   SHRINKAGE RADIUS   : 0.90                                          
REMARK   3   K_SOL              : 0.37                                          
REMARK   3   B_SOL              : 74.83                                         
REMARK   3                                                                      
REMARK   3  ERROR ESTIMATES.                                                    
REMARK   3   COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED)     : 0.240            
REMARK   3   PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.160           
REMARK   3                                                                      
REMARK   3  B VALUES.                                                           
REMARK   3   FROM WILSON PLOT           (A**2) : 22.22                          
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : 27.75                          
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                       
REMARK   3    B11 (A**2) : -4.68400                                             
REMARK   3    B22 (A**2) : 7.98720                                              
REMARK   3    B33 (A**2) : -3.94890                                             
REMARK   3    B12 (A**2) : 0.00000                                              
REMARK   3    B13 (A**2) : -0.21760                                             
REMARK   3    B23 (A**2) : 0.00000                                              
REMARK   3                                                                      
REMARK   3  TWINNING INFORMATION.                                               
REMARK   3   FRACTION: NULL                                                     
REMARK   3   OPERATOR: NULL                                                     
REMARK   3                                                                      
REMARK   3  DEVIATIONS FROM IDEAL VALUES.                                       
REMARK   3                 RMSD          COUNT                                  
REMARK   3   BOND      :  0.009           2331                                  
REMARK   3   ANGLE     :  1.175           3187                                  
REMARK   3   CHIRALITY :  0.085            332                                  
REMARK   3   PLANARITY :  0.006            425                                  
REMARK   3   DIHEDRAL  : 14.090            945                                  
REMARK   3                                                                      
REMARK   3  TLS DETAILS                                                         
REMARK   3   NUMBER OF TLS GROUPS  : NULL                                       
REMARK   3                                                                      
REMARK   3  NCS DETAILS                                                         
REMARK   3   NUMBER OF NCS GROUPS : NULL                                        
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 5D1M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-OCT-13.                  
REMARK 100 THE DEPOSITION ID IS D_1000212532.                                   
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : 09-AUG-10                          
REMARK 200  TEMPERATURE           (KELVIN) : 100                                
REMARK 200  PH                             : 7.5                                
REMARK 200  NUMBER OF CRYSTALS USED        : 1                                  
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : N                                  
REMARK 200  RADIATION SOURCE               : ROTATING ANODE                     
REMARK 200  BEAMLINE                       : NULL                               
REMARK 200  X-RAY GENERATOR MODEL          : RIGAKU MICROMAX-007 HF             
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                  
REMARK 200  WAVELENGTH OR RANGE        (A) : 1.5418                             
REMARK 200  MONOCHROMATOR                  : MIRRORS                            
REMARK 200  OPTICS                         : MIRRORS                            
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : IMAGE PLATE                        
REMARK 200  DETECTOR MANUFACTURER          : MAR SCANNER 345 MM PLATE           
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : HKL-3000                           
REMARK 200  DATA SCALING SOFTWARE          : HKL-3000                           
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 38987                              
REMARK 200  RESOLUTION RANGE HIGH      (A) : 1.580                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 50.000                             
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : NULL                               
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 99.7                               
REMARK 200  DATA REDUNDANCY                : 6.200                              
REMARK 200  R MERGE                    (I) : 0.03300                            
REMARK 200  R SYM                      (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : 23.0000                            
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.58                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : 1.64                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : 96.9                               
REMARK 200  DATA REDUNDANCY IN SHELL       : 4.80                               
REMARK 200  R MERGE FOR SHELL          (I) : 0.28900                            
REMARK 200  R SYM FOR SHELL            (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR SHELL         : 5.296                              
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH                              
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS            
REMARK 200 SOFTWARE USED: PHENIX                                                
REMARK 200 STARTING MODEL: 5D1K                                                 
REMARK 200                                                                      
REMARK 200 REMARK: NULL                                                         
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 46.96                                     
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 10000, 8% ETHYLENE GLYCOL,       
REMARK 280  0.1M HEPS, PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE       
REMARK 280  292K                                                                
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1                          
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -X,Y,-Z                                                 
REMARK 290       3555   X+1/2,Y+1/2,Z                                           
REMARK 290       4555   -X+1/2,Y+1/2,-Z                                         
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   2  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   2  0.000000  0.000000 -1.000000        0.00000            
REMARK 290   SMTRY1   3  1.000000  0.000000  0.000000       52.84800            
REMARK 290   SMTRY2   3  0.000000  1.000000  0.000000       23.70750            
REMARK 290   SMTRY3   3  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   4 -1.000000  0.000000  0.000000       52.84800            
REMARK 290   SMTRY2   4  0.000000  1.000000  0.000000       23.70750            
REMARK 290   SMTRY3   4  0.000000  0.000000 -1.000000        0.00000            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC                           
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC                    
REMARK 350 SOFTWARE USED: PISA                                                  
REMARK 350 TOTAL BURIED SURFACE AREA: 3340 ANGSTROM**2                          
REMARK 350 SURFACE AREA OF THE COMPLEX: 15120 ANGSTROM**2                       
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL                         
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B                                  
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 375                                                                      
REMARK 375 SPECIAL POSITION                                                     
REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS            
REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL          
REMARK 375 POSITIONS.                                                           
REMARK 375                                                                      
REMARK 375 ATOM RES CSSEQI                                                      
REMARK 375      HOH A 364  LIES ON A SPECIAL POSITION.                          
REMARK 375      HOH A 375  LIES ON A SPECIAL POSITION.                          
REMARK 375      HOH A 400  LIES ON A SPECIAL POSITION.                          
REMARK 375      HOH A 513  LIES ON A SPECIAL POSITION.                          
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                
REMARK 465                                                                      
REMARK 465   M RES C SSSEQI                                                     
REMARK 465     MET A     1                                                      
REMARK 465     THR B   126                                                      
REMARK 465     ASP B   127                                                      
REMARK 465     ASN B   128                                                      
REMARK 465     GLN B   178                                                      
REMARK 465     GLU B   179                                                      
REMARK 465     GLN B   180                                                      
REMARK 465     GLU B   181                                                      
REMARK 465     GLN B   182                                                      
REMARK 465     GLU B   183                                                      
REMARK 465     ARG B   184                                                      
REMARK 465     GLN B   185                                                      
REMARK 465     HIS B   186                                                      
REMARK 465     ALA B   187                                                      
REMARK 465     THR B   188                                                      
REMARK 465     THR B   189                                                      
REMARK 465     LYS B   190                                                      
REMARK 465     GLN B   191                                                      
REMARK 465     LYS B   192                                                      
REMARK 465     ALA B   193                                                      
REMARK 465     VAL B   194                                                      
REMARK 465     ALA B   256                                                      
REMARK 465     GLU B   257                                                      
REMARK 465     ARG B   258                                                      
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    ASP A  16       57.81   -155.93                                   
REMARK 500    ASP A  42       31.18    -93.56                                   
REMARK 500    ARG A  90     -100.68   -137.05                                   
REMARK 500    ARG A  90     -105.11   -134.04                                   
REMARK 500    ASN A 114       79.91   -112.41                                   
REMARK 500    ASP A 130       70.91   -157.35                                   
REMARK 500    LYS B 145      -15.86     89.29                                   
REMARK 500    ARG B 202       -1.40     73.84                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 525                                                                      
REMARK 525 SOLVENT                                                              
REMARK 525                                                                      
REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT                    
REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST                  
REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT                 
REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE                       
REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER;                             
REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE                  
REMARK 525 NUMBER; I=INSERTION CODE):                                           
REMARK 525                                                                      
REMARK 525  M RES CSSEQI                                                        
REMARK 525    HOH A 517        DISTANCE =  6.38 ANGSTROMS                       
REMARK 525    HOH A 518        DISTANCE =  6.39 ANGSTROMS                       
REMARK 525    HOH B 557        DISTANCE =  6.42 ANGSTROMS                       
REMARK 620                                                                      
REMARK 620 METAL COORDINATION                                                   
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):                             
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              ZN B 301  ZN                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 CYS B 135   SG                                                     
REMARK 620 2 CYS B 138   SG  112.5                                              
REMARK 620 3 HIS B 158   ND1 105.1  95.8                                        
REMARK 620 4 CYS B 161   SG  112.9 112.0 117.3                                  
REMARK 620 N                    1     2     3                                   
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              ZN B 302  ZN                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 CYS B 153   SG                                                     
REMARK 620 2 HIS B 155   ND1 110.7                                              
REMARK 620 3 CYS B 198   SG  107.3 111.6                                        
REMARK 620 4 CYS B 201   SG  100.0 114.4 111.9                                  
REMARK 620 N                    1     2     3                                   
REMARK 800                                                                      
REMARK 800 SITE                                                                 
REMARK 800 SITE_IDENTIFIER: AC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: binding site for residue OXL A 201                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC2                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 202                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC3                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 301                  
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC4                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 302                  
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC5                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 303                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC6                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 304                 
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 5D1K   RELATED DB: PDB                                   
REMARK 900 RELATED ID: 5D1L   RELATED DB: PDB                                   
DBREF  5D1M A    1   147  UNP    P62837   UB2D2_HUMAN      1    147             
DBREF  5D1M B  126   258  UNP    Q96BH1   RNF25_HUMAN    126    258             
SEQADV 5D1M ALA B  199  UNP  Q96BH1    PRO   199 ENGINEERED MUTATION            
SEQRES   1 A  147  MET ALA LEU LYS ARG ILE HIS LYS GLU LEU ASN ASP LEU          
SEQRES   2 A  147  ALA ARG ASP PRO PRO ALA GLN CYS SER ALA GLY PRO VAL          
SEQRES   3 A  147  GLY ASP ASP MET PHE HIS TRP GLN ALA THR ILE MET GLY          
SEQRES   4 A  147  PRO ASN ASP SER PRO TYR GLN GLY GLY VAL PHE PHE LEU          
SEQRES   5 A  147  THR ILE HIS PHE PRO THR ASP TYR PRO PHE LYS PRO PRO          
SEQRES   6 A  147  LYS VAL ALA PHE THR THR ARG ILE TYR HIS PRO ASN ILE          
SEQRES   7 A  147  ASN SER ASN GLY SER ILE CYS LEU ASP ILE LEU ARG SER          
SEQRES   8 A  147  GLN TRP SER PRO ALA LEU THR ILE SER LYS VAL LEU LEU          
SEQRES   9 A  147  SER ILE CYS SER LEU LEU CYS ASP PRO ASN PRO ASP ASP          
SEQRES  10 A  147  PRO LEU VAL PRO GLU ILE ALA ARG ILE TYR LYS THR ASP          
SEQRES  11 A  147  ARG GLU LYS TYR ASN ARG ILE ALA ARG GLU TRP THR GLN          
SEQRES  12 A  147  LYS TYR ALA MET                                              
SEQRES   1 B  133  THR ASP ASN ASN ILE PRO HIS GLY GLN CYS VAL ILE CYS          
SEQRES   2 B  133  LEU TYR GLY PHE GLN GLU LYS GLU ALA PHE THR LYS THR          
SEQRES   3 B  133  PRO CYS TYR HIS TYR PHE HIS CYS HIS CYS LEU ALA ARG          
SEQRES   4 B  133  TYR ILE GLN HIS MET GLU GLN GLU LEU LYS ALA GLN GLY          
SEQRES   5 B  133  GLN GLU GLN GLU GLN GLU ARG GLN HIS ALA THR THR LYS          
SEQRES   6 B  133  GLN LYS ALA VAL GLY VAL GLN CYS ALA VAL CYS ARG GLU          
SEQRES   7 B  133  PRO LEU VAL TYR ASP LEU ALA SER LEU LYS ALA ALA PRO          
SEQRES   8 B  133  GLU PRO GLN GLN PRO MET GLU LEU TYR GLN PRO SER ALA          
SEQRES   9 B  133  GLU SER LEU ARG GLN GLN GLU GLU ARG LYS ARG LEU TYR          
SEQRES  10 B  133  GLN ARG GLN GLN GLU ARG GLY GLY ILE ILE ASP LEU GLU          
SEQRES  11 B  133  ALA GLU ARG                                                  
HET    OXL  A 201       6                                                       
HET    PEG  A 202      14                                                       
HET     ZN  B 301       1                                                       
HET     ZN  B 302       1                                                       
HET    EDO  B 303       4                                                       
HET    EDO  B 304       4                                                       
HETNAM     OXL OXALATE ION                                                      
HETNAM     PEG DI(HYDROXYETHYL)ETHER                                            
HETNAM      ZN ZINC ION                                                         
HETNAM     EDO 1,2-ETHANEDIOL                                                   
HETSYN     EDO ETHYLENE GLYCOL                                                  
FORMUL   3  OXL    C2 O4 2-                                                     
FORMUL   4  PEG    C4 H10 O3                                                    
FORMUL   5   ZN    2(ZN 2+)                                                     
FORMUL   7  EDO    2(C2 H6 O2)                                                  
FORMUL   9  HOH   *375(H2 O)                                                    
HELIX    1 AA1 ALA A    2  ASP A   16  1                                  15    
HELIX    2 AA2 LEU A   86  ARG A   90  5                                   5    
HELIX    3 AA3 THR A   98  ASP A  112  1                                  15    
HELIX    4 AA4 VAL A  120  ASP A  130  1                                  11    
HELIX    5 AA5 ASP A  130  ALA A  146  1                                  17    
HELIX    6 AA6 CYS B  159  GLY B  177  1                                  19    
HELIX    7 AA7 ASP B  208  ALA B  215  1                                   8    
HELIX    8 AA8 SER B  228  ARG B  248  1                                  21    
SHEET    1 AA1 4 CYS A  21  VAL A  26  0                                        
SHEET    2 AA1 4 ASP A  29  MET A  38 -1  O  HIS A  32   N  VAL A  26           
SHEET    3 AA1 4 VAL A  49  HIS A  55 -1  O  PHE A  50   N  ILE A  37           
SHEET    4 AA1 4 LYS A  66  PHE A  69 -1  O  LYS A  66   N  HIS A  55           
SHEET    1 AA2 2 PHE B 148  LYS B 150  0                                        
SHEET    2 AA2 2 TYR B 156  HIS B 158 -1  O  PHE B 157   N  THR B 149           
LINK         SG  CYS B 135                ZN    ZN B 301     1555   1555  2.38  
LINK         SG  CYS B 138                ZN    ZN B 301     1555   1555  2.31  
LINK         SG  CYS B 153                ZN    ZN B 302     1555   1555  2.34  
LINK         ND1 HIS B 155                ZN    ZN B 302     1555   1555  2.18  
LINK         ND1 HIS B 158                ZN    ZN B 301     1555   1555  2.32  
LINK         SG  CYS B 161                ZN    ZN B 301     1555   1555  2.41  
LINK         SG  CYS B 198                ZN    ZN B 302     1555   1555  2.33  
LINK         SG  CYS B 201                ZN    ZN B 302     1555   1555  2.41  
CISPEP   1 TYR A   60    PRO A   61          0         6.31                     
SITE     1 AC1  5 GLU A 140  TRP A 141  LYS A 144  TYR A 145                    
SITE     2 AC1  5 PEG A 202                                                     
SITE     1 AC2  6 ARG A  72  SER A  80  TRP A 141  TYR A 145                    
SITE     2 AC2  6 OXL A 201  HOH A 397                                          
SITE     1 AC3  4 CYS B 135  CYS B 138  HIS B 158  CYS B 161                    
SITE     1 AC4  4 CYS B 153  HIS B 155  CYS B 198  CYS B 201                    
SITE     1 AC5  7 THR B 149  LYS B 150  THR B 151  PRO B 152                    
SITE     2 AC5  7 VAL B 206  GLU B 247  ARG B 248                               
SITE     1 AC6  6 ASN A  41  GLN A  46  MET A 147  LYS B 150                    
SITE     2 AC6  6 TYR B 154  ARG B 248                                          
CRYST1  105.696   47.415   67.975  90.00 118.32  90.00 C 1 2 1       4          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.009461  0.000000  0.005099        0.00000                         
SCALE2      0.000000  0.021090  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.016712        0.00000