PDB Short entry for 5D3O HEADER HYDROLASE 06-AUG-15 5D3O TITLE CRYSTAL STRUCTURE OF FULL LENGTH HUMAN GLUTAMINASE C EXPRESSED IN TITLE 2 E.COLI COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTAMINASE KIDNEY ISOFORM, MITOCHONDRIAL; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: GLS,K-GLUTAMINASE,L-GLUTAMINE AMIDOHYDROLASE; COMPND 5 EC: 3.5.1.2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GLS, GLS1, KIAA0838; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PSUMO KEYWDS GLUTAMINASE C, GAC, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Q.HUANG REVDAT 5 06-MAR-24 5D3O 1 REMARK REVDAT 4 25-DEC-19 5D3O 1 REMARK REVDAT 3 20-SEP-17 5D3O 1 REMARK REVDAT 2 06-SEP-17 5D3O 1 REMARK REVDAT 1 23-SEP-15 5D3O 0 JRNL AUTH Q.HUANG JRNL TITL CRYSTAL STRUCTURE OF FULL LENGTH HUMAN GLUTAMINASE C JRNL TITL 2 EXPRESSED IN E.COLI JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.79 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7_650 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : MLHL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.79 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.77 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 87.7 REMARK 3 NUMBER OF REFLECTIONS : 29104 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1455 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.7752 - 6.0067 0.97 3289 152 0.1890 0.2516 REMARK 3 2 6.0067 - 4.7707 0.99 3173 164 0.1928 0.2263 REMARK 3 3 4.7707 - 4.1685 0.95 2998 177 0.1542 0.1770 REMARK 3 4 4.1685 - 3.7878 0.91 2861 158 0.1789 0.2011 REMARK 3 5 3.7878 - 3.5165 0.92 2867 154 0.2005 0.3072 REMARK 3 6 3.5165 - 3.3093 0.88 2741 130 0.2537 0.3166 REMARK 3 7 3.3093 - 3.1437 0.86 2717 115 0.2997 0.3886 REMARK 3 8 3.1437 - 3.0069 0.84 2575 151 0.3525 0.4389 REMARK 3 9 3.0069 - 2.8912 0.77 2345 140 0.3597 0.4743 REMARK 3 10 2.8912 - 2.7914 0.67 2083 114 0.3966 0.4060 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.72 REMARK 3 K_SOL : 0.31 REMARK 3 B_SOL : 59.27 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.980 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 41.17130 REMARK 3 B22 (A**2) : -25.62080 REMARK 3 B33 (A**2) : -15.55050 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 6212 REMARK 3 ANGLE : 1.157 8371 REMARK 3 CHIRALITY : 0.080 920 REMARK 3 PLANARITY : 0.005 1075 REMARK 3 DIHEDRAL : 16.524 2279 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5D3O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-AUG-15. REMARK 100 THE DEPOSITION ID IS D_1000212610. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-MAY-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5-8.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : F1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.920 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32955 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.790 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.10800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG6000, 1.0M LICL, 0.1M TRIS-HCL, REMARK 280 PH8.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 69.68550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 89.89450 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 69.68550 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 89.89450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 60620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -179.78900 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 77 REMARK 465 SER A 78 REMARK 465 SER A 79 REMARK 465 SER A 80 REMARK 465 PRO A 81 REMARK 465 SER A 82 REMARK 465 GLU A 83 REMARK 465 ILE A 84 REMARK 465 LEU A 85 REMARK 465 GLN A 86 REMARK 465 GLU A 87 REMARK 465 LEU A 88 REMARK 465 GLY A 89 REMARK 465 LYS A 90 REMARK 465 GLY A 91 REMARK 465 SER A 92 REMARK 465 THR A 93 REMARK 465 HIS A 94 REMARK 465 PRO A 95 REMARK 465 GLN A 96 REMARK 465 PRO A 97 REMARK 465 GLY A 98 REMARK 465 VAL A 99 REMARK 465 SER A 100 REMARK 465 PRO A 101 REMARK 465 PRO A 102 REMARK 465 ALA A 103 REMARK 465 ALA A 104 REMARK 465 PRO A 105 REMARK 465 ALA A 106 REMARK 465 ALA A 107 REMARK 465 PRO A 108 REMARK 465 GLY A 109 REMARK 465 PRO A 110 REMARK 465 LYS A 111 REMARK 465 ASP A 112 REMARK 465 GLY A 113 REMARK 465 PRO A 114 REMARK 465 GLY A 115 REMARK 465 GLU A 116 REMARK 465 THR A 117 REMARK 465 ASP A 118 REMARK 465 ALA A 119 REMARK 465 PHE A 120 REMARK 465 GLY A 121 REMARK 465 ASN A 122 REMARK 465 SER A 123 REMARK 465 GLU A 124 REMARK 465 GLY A 125 REMARK 465 LYS A 126 REMARK 465 GLU A 127 REMARK 465 LEU A 128 REMARK 465 VAL A 129 REMARK 465 ALA A 130 REMARK 465 SER A 131 REMARK 465 GLY A 132 REMARK 465 GLU A 133 REMARK 465 ASN A 134 REMARK 465 LYS A 135 REMARK 465 ILE A 136 REMARK 465 LYS A 137 REMARK 465 GLN A 138 REMARK 465 GLY A 139 REMARK 465 LEU A 140 REMARK 465 LEU A 141 REMARK 465 PRO A 142 REMARK 465 GLY A 155 REMARK 465 LEU A 191 REMARK 465 GLN A 192 REMARK 465 THR A 193 REMARK 465 THR A 194 REMARK 465 SER A 195 REMARK 465 ASP A 196 REMARK 465 GLY A 197 REMARK 465 ILE A 255 REMARK 465 PRO A 256 REMARK 465 GLN A 257 REMARK 465 LEU A 258 REMARK 465 GLY A 320 REMARK 465 LEU A 321 REMARK 465 ARG A 322 REMARK 465 PHE A 323 REMARK 465 ASN A 324 REMARK 465 LYS A 325 REMARK 465 GLY A 552 REMARK 465 ASP A 553 REMARK 465 GLN A 554 REMARK 465 ARG A 555 REMARK 465 HIS A 556 REMARK 465 SER A 557 REMARK 465 PHE A 558 REMARK 465 GLY A 559 REMARK 465 PRO A 560 REMARK 465 LEU A 561 REMARK 465 ASP A 562 REMARK 465 TYR A 563 REMARK 465 GLU A 564 REMARK 465 SER A 565 REMARK 465 LEU A 566 REMARK 465 GLN A 567 REMARK 465 GLN A 568 REMARK 465 GLU A 569 REMARK 465 LEU A 570 REMARK 465 ALA A 571 REMARK 465 LEU A 572 REMARK 465 LYS A 573 REMARK 465 GLU A 574 REMARK 465 THR A 575 REMARK 465 VAL A 576 REMARK 465 TRP A 577 REMARK 465 LYS A 578 REMARK 465 LYS A 579 REMARK 465 VAL A 580 REMARK 465 SER A 581 REMARK 465 PRO A 582 REMARK 465 GLU A 583 REMARK 465 SER A 584 REMARK 465 ASN A 585 REMARK 465 GLU A 586 REMARK 465 ASP A 587 REMARK 465 ILE A 588 REMARK 465 SER A 589 REMARK 465 THR A 590 REMARK 465 THR A 591 REMARK 465 VAL A 592 REMARK 465 VAL A 593 REMARK 465 TYR A 594 REMARK 465 ARG A 595 REMARK 465 MET A 596 REMARK 465 GLU A 597 REMARK 465 SER A 598 REMARK 465 LEU A 599 REMARK 465 GLY A 600 REMARK 465 GLU A 601 REMARK 465 LYS A 602 REMARK 465 SER A 603 REMARK 465 LEU B 77 REMARK 465 SER B 78 REMARK 465 SER B 79 REMARK 465 SER B 80 REMARK 465 PRO B 81 REMARK 465 SER B 82 REMARK 465 GLU B 83 REMARK 465 ILE B 84 REMARK 465 LEU B 85 REMARK 465 GLN B 86 REMARK 465 GLU B 87 REMARK 465 LEU B 88 REMARK 465 GLY B 89 REMARK 465 LYS B 90 REMARK 465 GLY B 91 REMARK 465 SER B 92 REMARK 465 THR B 93 REMARK 465 HIS B 94 REMARK 465 PRO B 95 REMARK 465 GLN B 96 REMARK 465 PRO B 97 REMARK 465 GLY B 98 REMARK 465 VAL B 99 REMARK 465 SER B 100 REMARK 465 PRO B 101 REMARK 465 PRO B 102 REMARK 465 ALA B 103 REMARK 465 ALA B 104 REMARK 465 PRO B 105 REMARK 465 ALA B 106 REMARK 465 ALA B 107 REMARK 465 PRO B 108 REMARK 465 GLY B 109 REMARK 465 PRO B 110 REMARK 465 LYS B 111 REMARK 465 ASP B 112 REMARK 465 GLY B 113 REMARK 465 PRO B 114 REMARK 465 GLY B 115 REMARK 465 GLU B 116 REMARK 465 THR B 117 REMARK 465 ASP B 118 REMARK 465 ALA B 119 REMARK 465 PHE B 120 REMARK 465 GLY B 121 REMARK 465 ASN B 122 REMARK 465 SER B 123 REMARK 465 GLU B 124 REMARK 465 GLY B 125 REMARK 465 LYS B 126 REMARK 465 GLU B 127 REMARK 465 LEU B 128 REMARK 465 VAL B 129 REMARK 465 ALA B 130 REMARK 465 SER B 131 REMARK 465 GLY B 132 REMARK 465 GLU B 133 REMARK 465 ASN B 134 REMARK 465 LYS B 135 REMARK 465 ILE B 136 REMARK 465 LYS B 137 REMARK 465 GLN B 138 REMARK 465 GLY B 139 REMARK 465 LEU B 140 REMARK 465 LEU B 141 REMARK 465 PRO B 142 REMARK 465 GLY B 155 REMARK 465 GLN B 156 REMARK 465 GLU B 157 REMARK 465 LEU B 191 REMARK 465 GLN B 192 REMARK 465 THR B 193 REMARK 465 THR B 194 REMARK 465 SER B 195 REMARK 465 ASP B 196 REMARK 465 GLY B 197 REMARK 465 ILE B 255 REMARK 465 PRO B 256 REMARK 465 GLN B 257 REMARK 465 LEU B 258 REMARK 465 GLY B 320 REMARK 465 LEU B 321 REMARK 465 ARG B 322 REMARK 465 PHE B 323 REMARK 465 ASN B 324 REMARK 465 LYS B 325 REMARK 465 GLY B 552 REMARK 465 ASP B 553 REMARK 465 GLN B 554 REMARK 465 ARG B 555 REMARK 465 HIS B 556 REMARK 465 SER B 557 REMARK 465 PHE B 558 REMARK 465 GLY B 559 REMARK 465 PRO B 560 REMARK 465 LEU B 561 REMARK 465 ASP B 562 REMARK 465 TYR B 563 REMARK 465 GLU B 564 REMARK 465 SER B 565 REMARK 465 LEU B 566 REMARK 465 GLN B 567 REMARK 465 GLN B 568 REMARK 465 GLU B 569 REMARK 465 LEU B 570 REMARK 465 ALA B 571 REMARK 465 LEU B 572 REMARK 465 LYS B 573 REMARK 465 GLU B 574 REMARK 465 THR B 575 REMARK 465 VAL B 576 REMARK 465 TRP B 577 REMARK 465 LYS B 578 REMARK 465 LYS B 579 REMARK 465 VAL B 580 REMARK 465 SER B 581 REMARK 465 PRO B 582 REMARK 465 GLU B 583 REMARK 465 SER B 584 REMARK 465 ASN B 585 REMARK 465 GLU B 586 REMARK 465 ASP B 587 REMARK 465 ILE B 588 REMARK 465 SER B 589 REMARK 465 THR B 590 REMARK 465 THR B 591 REMARK 465 VAL B 592 REMARK 465 VAL B 593 REMARK 465 TYR B 594 REMARK 465 ARG B 595 REMARK 465 MET B 596 REMARK 465 GLU B 597 REMARK 465 SER B 598 REMARK 465 LEU B 599 REMARK 465 GLY B 600 REMARK 465 GLU B 601 REMARK 465 LYS B 602 REMARK 465 SER B 603 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 198 CG1 CG2 REMARK 470 VAL B 198 CG1 CG2 REMARK 470 GLN B 210 CG CD OE1 NE2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 206 CE REMARK 480 ARG A 221 CZ REMARK 480 LYS B 206 CE REMARK 480 ARG B 221 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 189 27.28 -68.01 REMARK 500 LYS A 202 -30.32 -38.22 REMARK 500 ASN A 212 55.39 -108.27 REMARK 500 GLN A 246 96.64 -60.61 REMARK 500 SER A 247 47.04 -109.18 REMARK 500 ASP A 253 53.50 -109.61 REMARK 500 PRO A 263 -6.66 -56.87 REMARK 500 TRP A 266 119.71 -168.07 REMARK 500 THR A 280 130.84 -170.63 REMARK 500 GLN A 290 -132.78 59.62 REMARK 500 PRO A 318 174.77 -58.94 REMARK 500 PHE A 327 -46.86 100.10 REMARK 500 LYS A 351 55.43 39.19 REMARK 500 ASN A 373 16.65 82.11 REMARK 500 SER A 389 19.57 171.95 REMARK 500 TYR A 471 -142.36 51.94 REMARK 500 ASN A 499 -0.89 69.32 REMARK 500 VAL A 500 -68.25 -124.72 REMARK 500 ALA A 542 -118.22 46.06 REMARK 500 ASP B 177 123.30 -36.45 REMARK 500 MET B 199 83.58 -177.95 REMARK 500 PHE B 205 -70.08 -60.50 REMARK 500 LYS B 206 -37.90 -38.83 REMARK 500 ARG B 222 59.42 32.81 REMARK 500 SER B 247 54.33 -114.00 REMARK 500 ALA B 252 102.27 -56.19 REMARK 500 ASP B 253 6.65 -66.56 REMARK 500 LYS B 260 36.03 -177.19 REMARK 500 PHE B 261 -133.47 -117.44 REMARK 500 PRO B 263 21.25 -79.24 REMARK 500 TRP B 266 126.37 -171.32 REMARK 500 GLN B 290 -135.55 42.30 REMARK 500 PHE B 327 -52.33 92.58 REMARK 500 ASP B 331 32.04 -92.73 REMARK 500 GLU B 388 -72.20 -51.07 REMARK 500 TYR B 471 -140.49 53.08 REMARK 500 VAL B 500 -68.66 -133.55 REMARK 500 SER B 507 107.38 -164.51 REMARK 500 PHE B 541 28.92 -144.04 REMARK 500 ALA B 542 -123.08 56.71 REMARK 500 GLU B 550 -86.83 -59.72 REMARK 500 REMARK 500 REMARK: NULL DBREF 5D3O A 77 603 UNP O94925 GLSK_HUMAN 72 598 DBREF 5D3O B 77 603 UNP O94925 GLSK_HUMAN 72 598 SEQADV 5D3O ALA A 273 UNP O94925 VAL 268 CONFLICT SEQADV 5D3O ALA B 273 UNP O94925 VAL 268 CONFLICT SEQRES 1 A 527 LEU SER SER SER PRO SER GLU ILE LEU GLN GLU LEU GLY SEQRES 2 A 527 LYS GLY SER THR HIS PRO GLN PRO GLY VAL SER PRO PRO SEQRES 3 A 527 ALA ALA PRO ALA ALA PRO GLY PRO LYS ASP GLY PRO GLY SEQRES 4 A 527 GLU THR ASP ALA PHE GLY ASN SER GLU GLY LYS GLU LEU SEQRES 5 A 527 VAL ALA SER GLY GLU ASN LYS ILE LYS GLN GLY LEU LEU SEQRES 6 A 527 PRO SER LEU GLU ASP LEU LEU PHE TYR THR ILE ALA GLU SEQRES 7 A 527 GLY GLN GLU LYS ILE PRO VAL HIS LYS PHE ILE THR ALA SEQRES 8 A 527 LEU LYS SER THR GLY LEU ARG THR SER ASP PRO ARG LEU SEQRES 9 A 527 LYS GLU CYS MET ASP MET LEU ARG LEU THR LEU GLN THR SEQRES 10 A 527 THR SER ASP GLY VAL MET LEU ASP LYS ASP LEU PHE LYS SEQRES 11 A 527 LYS CYS VAL GLN SER ASN ILE VAL LEU LEU THR GLN ALA SEQRES 12 A 527 PHE ARG ARG LYS PHE VAL ILE PRO ASP PHE MET SER PHE SEQRES 13 A 527 THR SER HIS ILE ASP GLU LEU TYR GLU SER ALA LYS LYS SEQRES 14 A 527 GLN SER GLY GLY LYS VAL ALA ASP TYR ILE PRO GLN LEU SEQRES 15 A 527 ALA LYS PHE SER PRO ASP LEU TRP GLY VAL SER VAL CYS SEQRES 16 A 527 THR ALA ASP GLY GLN ARG HIS SER THR GLY ASP THR LYS SEQRES 17 A 527 VAL PRO PHE CYS LEU GLN SER CYS VAL LYS PRO LEU LYS SEQRES 18 A 527 TYR ALA ILE ALA VAL ASN ASP LEU GLY THR GLU TYR VAL SEQRES 19 A 527 HIS ARG TYR VAL GLY LYS GLU PRO SER GLY LEU ARG PHE SEQRES 20 A 527 ASN LYS LEU PHE LEU ASN GLU ASP ASP LYS PRO HIS ASN SEQRES 21 A 527 PRO MET VAL ASN ALA GLY ALA ILE VAL VAL THR SER LEU SEQRES 22 A 527 ILE LYS GLN GLY VAL ASN ASN ALA GLU LYS PHE ASP TYR SEQRES 23 A 527 VAL MET GLN PHE LEU ASN LYS MET ALA GLY ASN GLU TYR SEQRES 24 A 527 VAL GLY PHE SER ASN ALA THR PHE GLN SER GLU ARG GLU SEQRES 25 A 527 SER GLY ASP ARG ASN PHE ALA ILE GLY TYR TYR LEU LYS SEQRES 26 A 527 GLU LYS LYS CYS PHE PRO GLU GLY THR ASP MET VAL GLY SEQRES 27 A 527 ILE LEU ASP PHE TYR PHE GLN LEU CYS SER ILE GLU VAL SEQRES 28 A 527 THR CYS GLU SER ALA SER VAL MET ALA ALA THR LEU ALA SEQRES 29 A 527 ASN GLY GLY PHE CYS PRO ILE THR GLY GLU ARG VAL LEU SEQRES 30 A 527 SER PRO GLU ALA VAL ARG ASN THR LEU SER LEU MET HIS SEQRES 31 A 527 SER CYS GLY MET TYR ASP PHE SER GLY GLN PHE ALA PHE SEQRES 32 A 527 HIS VAL GLY LEU PRO ALA LYS SER GLY VAL ALA GLY GLY SEQRES 33 A 527 ILE LEU LEU VAL VAL PRO ASN VAL MET GLY MET MET CYS SEQRES 34 A 527 TRP SER PRO PRO LEU ASP LYS MET GLY ASN SER VAL LYS SEQRES 35 A 527 GLY ILE HIS PHE CYS HIS ASP LEU VAL SER LEU CYS ASN SEQRES 36 A 527 PHE HIS ASN TYR ASP ASN LEU ARG HIS PHE ALA LYS LYS SEQRES 37 A 527 LEU ASP PRO ARG ARG GLU GLY GLY ASP GLN ARG HIS SER SEQRES 38 A 527 PHE GLY PRO LEU ASP TYR GLU SER LEU GLN GLN GLU LEU SEQRES 39 A 527 ALA LEU LYS GLU THR VAL TRP LYS LYS VAL SER PRO GLU SEQRES 40 A 527 SER ASN GLU ASP ILE SER THR THR VAL VAL TYR ARG MET SEQRES 41 A 527 GLU SER LEU GLY GLU LYS SER SEQRES 1 B 527 LEU SER SER SER PRO SER GLU ILE LEU GLN GLU LEU GLY SEQRES 2 B 527 LYS GLY SER THR HIS PRO GLN PRO GLY VAL SER PRO PRO SEQRES 3 B 527 ALA ALA PRO ALA ALA PRO GLY PRO LYS ASP GLY PRO GLY SEQRES 4 B 527 GLU THR ASP ALA PHE GLY ASN SER GLU GLY LYS GLU LEU SEQRES 5 B 527 VAL ALA SER GLY GLU ASN LYS ILE LYS GLN GLY LEU LEU SEQRES 6 B 527 PRO SER LEU GLU ASP LEU LEU PHE TYR THR ILE ALA GLU SEQRES 7 B 527 GLY GLN GLU LYS ILE PRO VAL HIS LYS PHE ILE THR ALA SEQRES 8 B 527 LEU LYS SER THR GLY LEU ARG THR SER ASP PRO ARG LEU SEQRES 9 B 527 LYS GLU CYS MET ASP MET LEU ARG LEU THR LEU GLN THR SEQRES 10 B 527 THR SER ASP GLY VAL MET LEU ASP LYS ASP LEU PHE LYS SEQRES 11 B 527 LYS CYS VAL GLN SER ASN ILE VAL LEU LEU THR GLN ALA SEQRES 12 B 527 PHE ARG ARG LYS PHE VAL ILE PRO ASP PHE MET SER PHE SEQRES 13 B 527 THR SER HIS ILE ASP GLU LEU TYR GLU SER ALA LYS LYS SEQRES 14 B 527 GLN SER GLY GLY LYS VAL ALA ASP TYR ILE PRO GLN LEU SEQRES 15 B 527 ALA LYS PHE SER PRO ASP LEU TRP GLY VAL SER VAL CYS SEQRES 16 B 527 THR ALA ASP GLY GLN ARG HIS SER THR GLY ASP THR LYS SEQRES 17 B 527 VAL PRO PHE CYS LEU GLN SER CYS VAL LYS PRO LEU LYS SEQRES 18 B 527 TYR ALA ILE ALA VAL ASN ASP LEU GLY THR GLU TYR VAL SEQRES 19 B 527 HIS ARG TYR VAL GLY LYS GLU PRO SER GLY LEU ARG PHE SEQRES 20 B 527 ASN LYS LEU PHE LEU ASN GLU ASP ASP LYS PRO HIS ASN SEQRES 21 B 527 PRO MET VAL ASN ALA GLY ALA ILE VAL VAL THR SER LEU SEQRES 22 B 527 ILE LYS GLN GLY VAL ASN ASN ALA GLU LYS PHE ASP TYR SEQRES 23 B 527 VAL MET GLN PHE LEU ASN LYS MET ALA GLY ASN GLU TYR SEQRES 24 B 527 VAL GLY PHE SER ASN ALA THR PHE GLN SER GLU ARG GLU SEQRES 25 B 527 SER GLY ASP ARG ASN PHE ALA ILE GLY TYR TYR LEU LYS SEQRES 26 B 527 GLU LYS LYS CYS PHE PRO GLU GLY THR ASP MET VAL GLY SEQRES 27 B 527 ILE LEU ASP PHE TYR PHE GLN LEU CYS SER ILE GLU VAL SEQRES 28 B 527 THR CYS GLU SER ALA SER VAL MET ALA ALA THR LEU ALA SEQRES 29 B 527 ASN GLY GLY PHE CYS PRO ILE THR GLY GLU ARG VAL LEU SEQRES 30 B 527 SER PRO GLU ALA VAL ARG ASN THR LEU SER LEU MET HIS SEQRES 31 B 527 SER CYS GLY MET TYR ASP PHE SER GLY GLN PHE ALA PHE SEQRES 32 B 527 HIS VAL GLY LEU PRO ALA LYS SER GLY VAL ALA GLY GLY SEQRES 33 B 527 ILE LEU LEU VAL VAL PRO ASN VAL MET GLY MET MET CYS SEQRES 34 B 527 TRP SER PRO PRO LEU ASP LYS MET GLY ASN SER VAL LYS SEQRES 35 B 527 GLY ILE HIS PHE CYS HIS ASP LEU VAL SER LEU CYS ASN SEQRES 36 B 527 PHE HIS ASN TYR ASP ASN LEU ARG HIS PHE ALA LYS LYS SEQRES 37 B 527 LEU ASP PRO ARG ARG GLU GLY GLY ASP GLN ARG HIS SER SEQRES 38 B 527 PHE GLY PRO LEU ASP TYR GLU SER LEU GLN GLN GLU LEU SEQRES 39 B 527 ALA LEU LYS GLU THR VAL TRP LYS LYS VAL SER PRO GLU SEQRES 40 B 527 SER ASN GLU ASP ILE SER THR THR VAL VAL TYR ARG MET SEQRES 41 B 527 GLU SER LEU GLY GLU LYS SER HELIX 1 AA1 SER A 143 ALA A 153 1 11 HELIX 2 AA2 VAL A 161 THR A 171 1 11 HELIX 3 AA3 ASP A 177 ARG A 179 5 3 HELIX 4 AA4 LEU A 180 LEU A 189 1 10 HELIX 5 AA5 LYS A 202 GLN A 210 1 9 HELIX 6 AA6 ASN A 212 ARG A 221 1 10 HELIX 7 AA7 ASP A 228 LYS A 245 1 18 HELIX 8 AA8 CYS A 292 GLY A 306 1 15 HELIX 9 AA9 GLY A 306 VAL A 314 1 9 HELIX 10 AB1 VAL A 339 SER A 348 1 10 HELIX 11 AB2 ASN A 355 ALA A 371 1 17 HELIX 12 AB3 SER A 379 GLU A 388 1 10 HELIX 13 AB4 GLY A 390 LYS A 403 1 14 HELIX 14 AB5 ASP A 411 SER A 424 1 14 HELIX 15 AB6 THR A 428 ASN A 441 1 14 HELIX 16 AB7 SER A 454 GLY A 469 1 16 HELIX 17 AB8 MET A 470 ASP A 472 5 3 HELIX 18 AB9 PHE A 473 VAL A 481 1 9 HELIX 19 AC1 SER A 516 CYS A 530 1 15 HELIX 20 AC2 LEU B 144 ILE B 152 1 9 HELIX 21 AC3 PRO B 160 THR B 171 1 12 HELIX 22 AC4 ASP B 177 ARG B 179 5 3 HELIX 23 AC5 LEU B 180 ARG B 188 1 9 HELIX 24 AC6 ASP B 201 GLN B 210 1 10 HELIX 25 AC7 ASN B 212 ARG B 221 1 10 HELIX 26 AC8 ASP B 228 GLN B 246 1 19 HELIX 27 AC9 GLN B 290 CYS B 292 5 3 HELIX 28 AD1 VAL B 293 GLY B 306 1 14 HELIX 29 AD2 GLY B 306 HIS B 311 1 6 HELIX 30 AD3 VAL B 339 ILE B 350 1 12 HELIX 31 AD4 ASN B 355 ALA B 371 1 17 HELIX 32 AD5 SER B 379 SER B 389 1 11 HELIX 33 AD6 GLY B 390 LYS B 403 1 14 HELIX 34 AD7 ASP B 411 SER B 424 1 14 HELIX 35 AD8 THR B 428 ASN B 441 1 14 HELIX 36 AD9 SER B 454 GLY B 469 1 16 HELIX 37 AE1 MET B 470 ASP B 472 5 3 HELIX 38 AE2 PHE B 473 VAL B 481 1 9 HELIX 39 AE3 SER B 516 CYS B 530 1 15 SHEET 1 AA1 2 LYS A 158 PRO A 160 0 SHEET 2 AA1 2 MET A 199 ASP A 201 -1 O LEU A 200 N ILE A 159 SHEET 1 AA2 2 LYS A 250 VAL A 251 0 SHEET 2 AA2 2 PRO A 509 LEU A 510 -1 O LEU A 510 N LYS A 250 SHEET 1 AA3 5 ARG A 277 GLY A 281 0 SHEET 2 AA3 5 GLY A 267 THR A 272 -1 N VAL A 270 O HIS A 278 SHEET 3 AA3 5 MET A 501 TRP A 506 -1 O TRP A 506 N GLY A 267 SHEET 4 AA3 5 GLY A 492 VAL A 497 -1 N VAL A 497 O MET A 501 SHEET 5 AA3 5 ALA A 485 SER A 487 -1 N LYS A 486 O LEU A 494 SHEET 1 AA4 3 PHE A 287 CYS A 288 0 SHEET 2 AA4 3 ILE A 425 VAL A 427 -1 O VAL A 427 N PHE A 287 SHEET 3 AA4 3 VAL A 376 PHE A 378 -1 N GLY A 377 O GLU A 426 SHEET 1 AA5 5 ARG B 277 GLY B 281 0 SHEET 2 AA5 5 GLY B 267 THR B 272 -1 N VAL B 270 O HIS B 278 SHEET 3 AA5 5 MET B 501 TRP B 506 -1 O TRP B 506 N GLY B 267 SHEET 4 AA5 5 GLY B 492 VAL B 497 -1 N LEU B 495 O MET B 503 SHEET 5 AA5 5 ALA B 485 SER B 487 -1 N LYS B 486 O LEU B 494 SHEET 1 AA6 3 PHE B 287 CYS B 288 0 SHEET 2 AA6 3 ILE B 425 VAL B 427 -1 O VAL B 427 N PHE B 287 SHEET 3 AA6 3 GLY B 377 PHE B 378 -1 N GLY B 377 O GLU B 426 CRYST1 51.609 139.371 179.789 90.00 90.00 90.00 P 2 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019376 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007175 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005562 0.00000