PDB Short entry for 5D5D HEADER TRANSPORT PROTEIN 10-AUG-15 5D5D TITLE IN MESO IN SITU SERIAL X-RAY CRYSTALLOGRAPHY STRUCTURE OF ALGE AT 100 TITLE 2 K COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALGINATE PRODUCTION PROTEIN ALGE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA (STRAIN ATCC 15692 / SOURCE 3 PAO1 / 1C / PRS 101 / LMG 12228); SOURCE 4 ORGANISM_TAXID: 208964; SOURCE 5 GENE: ALGE, ALG76, PA3544; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BETA-BARREL MEMBRANE PROTEINS, ALGE ALGINATE EXPORT PROTEIN, KEYWDS 2 TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR P.MA,C.-Y.HUANG,V.OLIERIC,K.DIEDERICHS,M.WANG,M.CAFFREY REVDAT 3 10-JAN-24 5D5D 1 HETSYN LINK REVDAT 2 02-MAR-16 5D5D 1 JRNL REVDAT 1 13-JAN-16 5D5D 0 JRNL AUTH C.Y.HUANG,V.OLIERIC,P.MA,N.HOWE,L.VOGELEY,X.LIU, JRNL AUTH 2 R.WARSHAMANAGE,T.WEINERT,E.PANEPUCCI,B.KOBILKA,K.DIEDERICHS, JRNL AUTH 3 M.WANG,M.CAFFREY JRNL TITL IN MESO IN SITU SERIAL X-RAY CRYSTALLOGRAPHY OF SOLUBLE AND JRNL TITL 2 MEMBRANE PROTEINS AT CRYOGENIC TEMPERATURES. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 72 93 2016 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 26894538 JRNL DOI 10.1107/S2059798315021683 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.22 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.8 REMARK 3 NUMBER OF REFLECTIONS : 20520 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.870 REMARK 3 FREE R VALUE TEST SET COUNT : 999 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.53 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.83 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2953 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2412 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2806 REMARK 3 BIN R VALUE (WORKING SET) : 0.2373 REMARK 3 BIN FREE R VALUE : 0.3125 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.98 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 147 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3211 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 233 REMARK 3 SOLVENT ATOMS : 23 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 59.11 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.08510 REMARK 3 B22 (A**2) : -15.68690 REMARK 3 B33 (A**2) : 13.60170 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.313 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.386 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.258 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.391 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.263 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.907 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.873 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3522 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 4714 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1264 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 91 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 498 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3522 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 3 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 404 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4136 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.22 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.69 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 18.48 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5D5D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-AUG-15. REMARK 100 THE DEPOSITION ID IS D_1000212528. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-FEB-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0332 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20520 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.6 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 5.9800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.46 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.450 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4AFK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 400, 0.1 M MES PH 6.0, 0.4 M K REMARK 280 THIOCYANATE, 0.02 M DIMANNURONATE, LIPIDIC CUBIC PHASE, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.16500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 88.42000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.17500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 88.42000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.16500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.17500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 SER A 3 REMARK 465 SER A 4 REMARK 465 ARG A 5 REMARK 465 SER A 6 REMARK 465 VAL A 7 REMARK 465 ASN A 8 REMARK 465 PRO A 9 REMARK 465 ARG A 10 REMARK 465 PRO A 11 REMARK 465 SER A 12 REMARK 465 PHE A 13 REMARK 465 ALA A 14 REMARK 465 PRO A 15 REMARK 465 ARG A 16 REMARK 465 ALA A 17 REMARK 465 LEU A 18 REMARK 465 SER A 19 REMARK 465 LEU A 20 REMARK 465 ALA A 21 REMARK 465 ILE A 22 REMARK 465 ALA A 23 REMARK 465 LEU A 24 REMARK 465 LEU A 25 REMARK 465 LEU A 26 REMARK 465 GLY A 27 REMARK 465 ALA A 28 REMARK 465 PRO A 29 REMARK 465 ALA A 30 REMARK 465 PHE A 31 REMARK 465 ALA A 32 REMARK 465 ALA A 33 REMARK 465 ASN A 34 REMARK 465 SER A 35 REMARK 465 GLY A 36 REMARK 465 GLU A 37 REMARK 465 ALA A 38 REMARK 465 PRO A 39 REMARK 465 ASP A 97 REMARK 465 THR A 98 REMARK 465 ILE A 99 REMARK 465 GLU A 100 REMARK 465 THR A 101 REMARK 465 ASP A 102 REMARK 465 THR A 103 REMARK 465 LEU A 104 REMARK 465 GLN A 105 REMARK 465 SER A 106 REMARK 465 ASP A 107 REMARK 465 THR A 108 REMARK 465 ASP A 109 REMARK 465 ASP A 110 REMARK 465 GLY A 111 REMARK 465 ASN A 112 REMARK 465 ASN A 113 REMARK 465 SER A 114 REMARK 465 ARG A 115 REMARK 465 ASN A 116 REMARK 465 ASP A 117 REMARK 465 GLY A 118 REMARK 465 ARG A 119 REMARK 465 GLU A 120 REMARK 465 PRO A 121 REMARK 465 ASP A 193 REMARK 465 LEU A 194 REMARK 465 ASP A 195 REMARK 465 GLU A 196 REMARK 465 LEU A 197 REMARK 465 ALA A 198 REMARK 465 PRO A 199 REMARK 465 GLU A 200 REMARK 465 ASP A 201 REMARK 465 GLY A 441 REMARK 465 LEU A 442 REMARK 465 LEU A 443 REMARK 465 PRO A 444 REMARK 465 ALA A 445 REMARK 465 SER A 446 REMARK 465 MET A 447 REMARK 465 SER A 448 REMARK 465 GLN A 449 REMARK 465 TYR A 450 REMARK 465 VAL A 451 REMARK 465 ASP A 452 REMARK 465 GLU A 453 REMARK 465 PRO A 454 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 54 108.83 -163.85 REMARK 500 ASN A 67 65.67 -157.08 REMARK 500 TRP A 81 79.89 -117.05 REMARK 500 ASP A 162 76.98 -153.96 REMARK 500 TYR A 190 28.32 46.95 REMARK 500 HIS A 218 -8.55 73.93 REMARK 500 ASN A 355 39.78 -93.75 REMARK 500 LEU A 374 83.86 -62.27 REMARK 500 ARG A 389 -118.97 51.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 LDA A 510 REMARK 610 PE5 A 511 REMARK 610 PE5 A 512 REMARK 610 PE5 A 513 REMARK 610 PE5 A 514 REMARK 610 PE5 A 515 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 503 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 55 OD1 REMARK 620 2 ASP A 55 OD2 48.8 REMARK 620 3 ASP A 57 OD1 78.0 96.9 REMARK 620 4 ASP A 57 OD2 69.4 116.6 52.8 REMARK 620 5 ALA A 61 O 142.9 162.5 77.8 73.6 REMARK 620 6 GLY A 63 O 75.7 99.1 126.9 74.9 97.3 REMARK 620 7 SER A 304 OG 81.3 126.0 46.5 13.9 61.6 84.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 501 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 136 O REMARK 620 2 THR A 139 O 80.9 REMARK 620 3 TYR A 141 O 164.9 98.4 REMARK 620 4 GLU A 144 O 103.3 152.0 84.5 REMARK 620 5 GLU A 144 OE1 89.8 81.1 105.0 71.3 REMARK 620 6 GLU A 322 OE1 139.6 128.6 33.3 64.6 118.5 REMARK 620 7 GLU A 322 OE2 136.1 131.7 37.0 62.9 119.8 3.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 502 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 265 O REMARK 620 2 ASN A 273 OD1 86.4 REMARK 620 3 ASN A 319 OD1 147.3 66.8 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LDA A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LDA A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LDA A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LDA A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LDA A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LDA A 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LDA A 510 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PE5 A 511 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PE5 A 512 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PE5 A 513 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PE5 A 514 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PE5 A 515 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 78M A 516 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 78M A 517 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MES A 518 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MES A 519 DBREF 5D5D A 1 490 UNP P18895 ALGE_PSEAE 1 490 SEQRES 1 A 490 MET ASN SER SER ARG SER VAL ASN PRO ARG PRO SER PHE SEQRES 2 A 490 ALA PRO ARG ALA LEU SER LEU ALA ILE ALA LEU LEU LEU SEQRES 3 A 490 GLY ALA PRO ALA PHE ALA ALA ASN SER GLY GLU ALA PRO SEQRES 4 A 490 LYS ASN PHE GLY LEU ASP VAL LYS ILE THR GLY GLU SER SEQRES 5 A 490 GLU ASN ASP ARG ASP LEU GLY THR ALA PRO GLY GLY THR SEQRES 6 A 490 LEU ASN ASP ILE GLY ILE ASP LEU ARG PRO TRP ALA PHE SEQRES 7 A 490 GLY GLN TRP GLY ASP TRP SER ALA TYR PHE MET GLY GLN SEQRES 8 A 490 ALA VAL ALA ALA THR ASP THR ILE GLU THR ASP THR LEU SEQRES 9 A 490 GLN SER ASP THR ASP ASP GLY ASN ASN SER ARG ASN ASP SEQRES 10 A 490 GLY ARG GLU PRO ASP LYS SER TYR LEU ALA ALA ARG GLU SEQRES 11 A 490 PHE TRP VAL ASP TYR ALA GLY LEU THR ALA TYR PRO GLY SEQRES 12 A 490 GLU HIS LEU ARG PHE GLY ARG GLN ARG LEU ARG GLU ASP SEQRES 13 A 490 SER GLY GLN TRP GLN ASP THR ASN ILE GLU ALA LEU ASN SEQRES 14 A 490 TRP SER PHE GLU THR THR LEU LEU ASN ALA HIS ALA GLY SEQRES 15 A 490 VAL ALA GLN ARG PHE SER GLU TYR ARG THR ASP LEU ASP SEQRES 16 A 490 GLU LEU ALA PRO GLU ASP LYS ASP ARG THR HIS VAL PHE SEQRES 17 A 490 GLY ASP ILE SER THR GLN TRP ALA PRO HIS HIS ARG ILE SEQRES 18 A 490 GLY VAL ARG ILE HIS HIS ALA ASP ASP SER GLY HIS LEU SEQRES 19 A 490 ARG ARG PRO GLY GLU GLU VAL ASP ASN LEU ASP LYS THR SEQRES 20 A 490 TYR THR GLY GLN LEU THR TRP LEU GLY ILE GLU ALA THR SEQRES 21 A 490 GLY ASP ALA TYR ASN TYR ARG SER SER MET PRO LEU ASN SEQRES 22 A 490 TYR TRP ALA SER ALA THR TRP LEU THR GLY ASP ARG ASP SEQRES 23 A 490 ASN LEU THR THR THR THR VAL ASP ASP ARG ARG ILE ALA SEQRES 24 A 490 THR GLY LYS GLN SER GLY ASP VAL ASN ALA PHE GLY VAL SEQRES 25 A 490 ASP LEU GLY LEU ARG TRP ASN ILE ASP GLU GLN TRP LYS SEQRES 26 A 490 ALA GLY VAL GLY TYR ALA ARG GLY SER GLY GLY GLY LYS SEQRES 27 A 490 ASP GLY GLU GLU GLN PHE GLN GLN THR GLY LEU GLU SER SEQRES 28 A 490 ASN ARG SER ASN PHE THR GLY THR ARG SER ARG VAL HIS SEQRES 29 A 490 ARG PHE GLY GLU ALA PHE ARG GLY GLU LEU SER ASN LEU SEQRES 30 A 490 GLN ALA ALA THR LEU PHE GLY SER TRP GLN LEU ARG GLU SEQRES 31 A 490 ASP TYR ASP ALA SER LEU VAL TYR HIS LYS PHE TRP ARG SEQRES 32 A 490 VAL ASP ASP ASP SER ASP ILE GLY THR SER GLY ILE ASN SEQRES 33 A 490 ALA ALA LEU GLN PRO GLY GLU LYS ASP ILE GLY GLN GLU SEQRES 34 A 490 LEU ASP LEU VAL VAL THR LYS TYR PHE LYS GLN GLY LEU SEQRES 35 A 490 LEU PRO ALA SER MET SER GLN TYR VAL ASP GLU PRO SER SEQRES 36 A 490 ALA LEU ILE ARG PHE ARG GLY GLY LEU PHE LYS PRO GLY SEQRES 37 A 490 ASP ALA TYR GLY PRO GLY THR ASP SER THR MET HIS ARG SEQRES 38 A 490 ALA PHE VAL ASP PHE ILE TRP ARG PHE HET NA A 501 1 HET NA A 502 1 HET CA A 503 1 HET LDA A 504 16 HET LDA A 505 16 HET LDA A 506 16 HET LDA A 507 16 HET LDA A 508 16 HET LDA A 509 16 HET LDA A 510 13 HET PE5 A 511 8 HET PE5 A 512 12 HET PE5 A 513 12 HET PE5 A 514 9 HET PE5 A 515 12 HET 78M A 516 22 HET 78M A 517 22 HET MES A 518 12 HET MES A 519 12 HETNAM NA SODIUM ION HETNAM CA CALCIUM ION HETNAM LDA LAURYL DIMETHYLAMINE-N-OXIDE HETNAM PE5 3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL HETNAM 78M (2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETSYN PE5 2-(2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}- HETSYN 2 PE5 ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL; POLYETHYLENE HETSYN 3 PE5 GLYCOL PEG400 HETSYN 78M 7.8 MONOACYLGLYCEROL FORMUL 2 NA 2(NA 1+) FORMUL 4 CA CA 2+ FORMUL 5 LDA 7(C14 H31 N O) FORMUL 12 PE5 5(C18 H38 O9) FORMUL 17 78M 2(C18 H34 O4) FORMUL 19 MES 2(C6 H13 N O4 S) FORMUL 21 HOH *23(H2 O) HELIX 1 AA1 ASP A 469 GLY A 472 5 4 SHEET 1 AA119 PHE A 42 ASN A 54 0 SHEET 2 AA119 LEU A 66 TRP A 81 -1 O ASP A 72 N LYS A 47 SHEET 3 AA119 TRP A 84 ALA A 95 -1 O GLY A 90 N PRO A 75 SHEET 4 AA119 LYS A 123 TYR A 135 -1 O TRP A 132 N TYR A 87 SHEET 5 AA119 HIS A 145 ARG A 154 -1 O PHE A 148 N VAL A 133 SHEET 6 AA119 ASP A 162 GLU A 173 -1 O ASN A 169 N ARG A 147 SHEET 7 AA119 LEU A 177 ALA A 184 -1 O ALA A 181 N TRP A 170 SHEET 8 AA119 THR A 205 ALA A 216 -1 O HIS A 206 N ALA A 184 SHEET 9 AA119 HIS A 219 ASP A 230 -1 O HIS A 227 N VAL A 207 SHEET 10 AA119 TYR A 248 GLY A 261 -1 O THR A 260 N ARG A 220 SHEET 11 AA119 LEU A 272 VAL A 293 -1 O TRP A 280 N LEU A 255 SHEET 12 AA119 ARG A 296 ASN A 319 -1 O ALA A 309 N LEU A 281 SHEET 13 AA119 TRP A 324 GLY A 333 -1 O ALA A 326 N TRP A 318 SHEET 14 AA119 LEU A 377 LEU A 388 -1 O SER A 385 N LYS A 325 SHEET 15 AA119 TYR A 392 TRP A 402 -1 O TYR A 398 N LEU A 382 SHEET 16 AA119 ASP A 425 PHE A 438 -1 O ASP A 431 N VAL A 397 SHEET 17 AA119 ALA A 456 PRO A 467 -1 O LYS A 466 N GLN A 428 SHEET 18 AA119 MET A 479 ARG A 489 -1 O ARG A 481 N GLY A 463 SHEET 19 AA119 PHE A 42 ASN A 54 -1 N VAL A 46 O TRP A 488 SHEET 1 AA2 2 ARG A 353 SER A 354 0 SHEET 2 AA2 2 VAL A 363 HIS A 364 -1 O VAL A 363 N SER A 354 LINK OD1 ASP A 55 CA CA A 503 1555 1555 2.84 LINK OD2 ASP A 55 CA CA A 503 1555 1555 2.27 LINK OD1 ASP A 57 CA CA A 503 1555 1555 2.48 LINK OD2 ASP A 57 CA CA A 503 1555 1555 2.51 LINK O ALA A 61 CA CA A 503 1555 1555 2.35 LINK O GLY A 63 CA CA A 503 1555 1555 2.15 LINK O ALA A 136 NA NA A 501 1555 1555 2.36 LINK O THR A 139 NA NA A 501 1555 1555 2.73 LINK O TYR A 141 NA NA A 501 1555 1555 2.55 LINK O GLU A 144 NA NA A 501 1555 1555 2.56 LINK OE1 GLU A 144 NA NA A 501 1555 1555 2.73 LINK O ASN A 265 NA NA A 502 1555 1555 2.69 LINK OD1 ASN A 273 NA NA A 502 1555 1555 3.07 LINK OG SER A 304 CA CA A 503 1555 31155 32.13 LINK OD1 ASN A 319 NA NA A 502 1555 1555 3.10 LINK OE1 GLU A 322 NA NA A 501 1555 4595 2.74 LINK OE2 GLU A 322 NA NA A 501 1555 4595 3.11 CISPEP 1 ASN A 54 ASP A 55 0 -3.43 SITE 1 AC1 4 ALA A 136 THR A 139 TYR A 141 GLU A 144 SITE 1 AC2 6 ASN A 265 ASN A 273 ARG A 317 ASN A 319 SITE 2 AC2 6 LYS A 325 GLY A 358 SITE 1 AC3 4 ASP A 55 ASP A 57 ALA A 61 GLY A 63 SITE 1 AC4 3 GLY A 315 VAL A 328 GLY A 329 SITE 1 AC5 6 LYS A 40 PHE A 42 GLY A 43 PRO A 75 SITE 2 AC5 6 TRP A 318 GLY A 327 SITE 1 AC6 4 ILE A 257 ALA A 276 VAL A 312 ARG A 332 SITE 1 AC7 2 ASP A 210 ILE A 225 SITE 1 AC8 10 ALA A 77 TRP A 81 ALA A 86 TYR A 87 SITE 2 AC8 10 PHE A 88 TRP A 132 HIS A 219 PRO A 271 SITE 3 AC8 10 LEU A 272 TYR A 274 SITE 1 AC9 8 SER A 52 ASN A 67 LEU A 430 LEU A 432 SITE 2 AC9 8 GLY A 462 LEU A 464 PE5 A 515 78M A 517 SITE 1 AD1 7 PHE A 131 PHE A 148 GLU A 166 ALA A 167 SITE 2 AD1 7 LEU A 168 VAL A 183 PHE A 187 SITE 1 AD2 11 GLN A 159 TRP A 160 TRP A 254 SER A 277 SITE 2 AD2 11 THR A 279 GLY A 311 VAL A 312 PHE A 344 SITE 3 AD2 11 GLN A 346 THR A 347 LEU A 374 SITE 1 AD3 4 ASP A 83 GLY A 137 THR A 139 ALA A 140 SITE 1 AD4 5 GLN A 303 GLN A 343 ARG A 403 ASP A 407 SITE 2 AD4 5 ASP A 409 SITE 1 AD5 9 THR A 247 ARG A 285 ASN A 287 GLN A 343 SITE 2 AD5 9 GLN A 345 GLN A 346 GLU A 350 GLU A 373 SITE 3 AD5 9 SER A 375 SITE 1 AD6 5 SER A 52 ASN A 54 ASN A 67 HIS A 480 SITE 2 AD6 5 LDA A 509 SITE 1 AD7 2 TRP A 280 ASN A 308 SITE 1 AD8 9 GLY A 50 GLU A 51 SER A 52 ASN A 67 SITE 2 AD8 9 VAL A 434 ILE A 458 PHE A 460 VAL A 484 SITE 3 AD8 9 LDA A 509 SITE 1 AD9 8 GLU A 189 ARG A 204 LEU A 244 ASP A 245 SITE 2 AD9 8 LYS A 246 THR A 247 TYR A 248 GLY A 348 SITE 1 AE1 8 THR A 290 THR A 291 ASP A 409 THR A 412 SITE 2 AE1 8 ILE A 415 ALA A 417 ALA A 418 LEU A 419 CRYST1 46.330 66.350 176.840 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021584 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015072 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005655 0.00000