PDB Short entry for 5DAH HEADER PEPTIDE BINDING PROTEIN 19-AUG-15 5DAH TITLE CRYSTAL STRUCTURE OF PZP DOMAIN OF HUMAN AF10 PROTEIN FUSED WITH TITLE 2 HISTONE H3 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN AF-10; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ALL1-FUSED GENE FROM CHROMOSOME 10 PROTEIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: HISTONE H3 PEPTIDE; COMPND 8 CHAIN: C, D; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MLLT10, AF10; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PHD FINGER, HISTONE TAIL READER, EPIGENETICS, H3K27 RECOGNITION, KEYWDS 2 PEPTIDE BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.CHEN,D.J.PATEL REVDAT 5 06-MAR-24 5DAH 1 REMARK REVDAT 4 25-DEC-19 5DAH 1 REMARK REVDAT 3 20-SEP-17 5DAH 1 JRNL REMARK REVDAT 2 11-NOV-15 5DAH 1 JRNL REVDAT 1 21-OCT-15 5DAH 0 JRNL AUTH S.CHEN,Z.YANG,A.W.WILKINSON,A.J.DESHPANDE,S.SIDOLI, JRNL AUTH 2 K.KRAJEWSKI,B.D.STRAHL,B.A.GARCIA,S.A.ARMSTRONG,D.J.PATEL, JRNL AUTH 3 O.GOZANI JRNL TITL THE PZP DOMAIN OF AF10 SENSES UNMODIFIED H3K27 TO REGULATE JRNL TITL 2 DOT1L-MEDIATED METHYLATION OF H3K79. JRNL REF MOL.CELL V. 60 319 2015 JRNL REFN ISSN 1097-2765 JRNL PMID 26439302 JRNL DOI 10.1016/J.MOLCEL.2015.08.019 REMARK 2 REMARK 2 RESOLUTION. 2.61 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.4_1496 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.61 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.95 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 11659 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1167 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.9589 - 5.2191 0.95 1320 148 0.1823 0.1904 REMARK 3 2 5.2191 - 4.1433 0.97 1308 144 0.1467 0.1940 REMARK 3 3 4.1433 - 3.6198 0.99 1324 148 0.1605 0.2291 REMARK 3 4 3.6198 - 3.2890 0.98 1329 148 0.1643 0.2357 REMARK 3 5 3.2890 - 3.0533 0.99 1324 147 0.1926 0.2976 REMARK 3 6 3.0533 - 2.8733 0.99 1317 147 0.1924 0.2942 REMARK 3 7 2.8733 - 2.7294 0.99 1351 149 0.2063 0.3075 REMARK 3 8 2.7294 - 2.6106 0.91 1219 136 0.2192 0.2719 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.350 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.490 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 2856 REMARK 3 ANGLE : 1.116 3872 REMARK 3 CHIRALITY : 0.044 415 REMARK 3 PLANARITY : 0.006 508 REMARK 3 DIHEDRAL : 14.290 986 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5DAH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-AUG-15. REMARK 100 THE DEPOSITION ID IS D_1000212926. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-FEB-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11663 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.610 REMARK 200 RESOLUTION RANGE LOW (A) : 47.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM CITRATE TRIBASIC REMARK 280 DEHYDRATE, PH 5.6, 0.2 M POTASSIUM SODIUM TARTRATE TETRAHYDRATE, REMARK 280 1.8 M AMMONIUM SULFATE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 39.99750 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1490 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -62.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 VAL A 2 REMARK 465 SER A 3 REMARK 465 SER A 4 REMARK 465 ASP A 5 REMARK 465 ARG A 6 REMARK 465 PRO A 7 REMARK 465 VAL A 8 REMARK 465 SER A 9 REMARK 465 LEU A 10 REMARK 465 GLU A 11 REMARK 465 ASP A 12 REMARK 465 GLU A 13 REMARK 465 VAL A 14 REMARK 465 SER A 15 REMARK 465 HIS A 16 REMARK 465 SER A 17 REMARK 465 MET A 18 REMARK 465 LYS A 19 REMARK 465 GLU A 20 REMARK 465 LYS A 200 REMARK 465 LEU A 201 REMARK 465 LYS A 202 REMARK 465 LYS A 203 REMARK 465 SER A 204 REMARK 465 LYS A 205 REMARK 465 ARG A 206 REMARK 465 GLY A 207 REMARK 465 SER A 208 REMARK 465 MET B 1 REMARK 465 VAL B 2 REMARK 465 SER B 3 REMARK 465 SER B 4 REMARK 465 ASP B 5 REMARK 465 ARG B 6 REMARK 465 PRO B 7 REMARK 465 VAL B 8 REMARK 465 SER B 9 REMARK 465 LEU B 10 REMARK 465 GLU B 11 REMARK 465 ASP B 12 REMARK 465 GLU B 13 REMARK 465 VAL B 14 REMARK 465 SER B 15 REMARK 465 HIS B 16 REMARK 465 SER B 17 REMARK 465 MET B 18 REMARK 465 LYS B 19 REMARK 465 GLY B 182 REMARK 465 ASN B 183 REMARK 465 GLY B 184 REMARK 465 SER B 204 REMARK 465 LYS B 205 REMARK 465 ARG B 206 REMARK 465 GLY B 207 REMARK 465 SER B 208 REMARK 465 GLN C 19 REMARK 465 ALA C 29 REMARK 465 GLN D 19 REMARK 465 ALA D 29 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 76 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 79 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 81 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 88 CD CE NZ REMARK 470 ASP A 89 CG OD1 OD2 REMARK 470 HIS A 130 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 135 CE NZ REMARK 470 GLU A 146 CG CD OE1 OE2 REMARK 470 GLU A 181 CG CD OE1 OE2 REMARK 470 ARG B 32 CD NE CZ NH1 NH2 REMARK 470 HIS B 45 CG ND1 CD2 CE1 NE2 REMARK 470 GLN B 74 CG CD OE1 NE2 REMARK 470 ARG B 76 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 79 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 81 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 88 CG CD CE NZ REMARK 470 GLU B 146 CG CD OE1 OE2 REMARK 470 LYS B 159 CE NZ REMARK 470 ARG B 163 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 181 CG CD OE1 OE2 REMARK 470 ASN B 187 CG OD1 ND2 REMARK 470 LEU B 201 CG CD1 CD2 REMARK 470 LYS B 202 CG CD CE NZ REMARK 470 LEU C 20 CG CD1 CD2 REMARK 470 LEU D 20 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 32 O HOH A 401 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 29 -8.00 69.94 REMARK 500 ASN A 37 67.42 -155.63 REMARK 500 THR A 63 53.03 -95.98 REMARK 500 ASN A 134 41.66 -105.71 REMARK 500 ASN B 37 73.49 -153.19 REMARK 500 ASP B 131 3.18 -66.66 REMARK 500 SER B 199 -159.06 -109.47 REMARK 500 LYS B 200 121.11 -38.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 439 DISTANCE = 5.86 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 25 SG REMARK 620 2 CYS A 28 SG 113.8 REMARK 620 3 HIS A 52 ND1 103.3 99.1 REMARK 620 4 CYS A 55 SG 111.4 111.7 116.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 42 SG REMARK 620 2 CYS A 47 SG 102.2 REMARK 620 3 CYS A 68 SG 111.5 117.4 REMARK 620 4 CYS A 71 SG 108.1 105.8 111.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 303 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 82 SG REMARK 620 2 CYS A 85 SG 112.4 REMARK 620 3 HIS A 102 ND1 94.6 94.6 REMARK 620 4 CYS A 105 SG 117.2 108.3 127.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 304 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 137 SG REMARK 620 2 CYS A 140 SG 119.0 REMARK 620 3 HIS A 167 ND1 102.1 103.4 REMARK 620 4 CYS A 170 SG 109.0 114.2 107.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 305 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 157 SG REMARK 620 2 CYS A 162 SG 102.2 REMARK 620 3 CYS A 194 SG 122.9 112.0 REMARK 620 4 HIS A 197 ND1 117.1 103.6 98.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 25 SG REMARK 620 2 CYS B 28 SG 117.7 REMARK 620 3 HIS B 52 ND1 108.6 99.4 REMARK 620 4 CYS B 55 SG 110.1 104.0 117.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 42 SG REMARK 620 2 CYS B 47 SG 104.3 REMARK 620 3 CYS B 68 SG 115.7 114.7 REMARK 620 4 CYS B 71 SG 108.0 101.0 111.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 303 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 82 SG REMARK 620 2 CYS B 85 SG 111.3 REMARK 620 3 HIS B 102 ND1 96.1 91.1 REMARK 620 4 CYS B 105 SG 121.6 115.5 115.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 304 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 137 SG REMARK 620 2 CYS B 140 SG 123.1 REMARK 620 3 HIS B 167 ND1 110.6 100.4 REMARK 620 4 CYS B 170 SG 113.2 105.7 101.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 305 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 157 SG REMARK 620 2 CYS B 162 SG 99.4 REMARK 620 3 CYS B 194 SG 122.2 120.7 REMARK 620 4 HIS B 197 ND1 105.8 101.7 104.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 306 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5DAG RELATED DB: PDB DBREF 5DAH A 1 208 UNP P55197 AF10_HUMAN 1 208 DBREF 5DAH B 1 208 UNP P55197 AF10_HUMAN 1 208 DBREF 5DAH C 19 29 PDB 5DAH 5DAH 19 29 DBREF 5DAH D 19 29 PDB 5DAH 5DAH 19 29 SEQRES 1 A 208 MET VAL SER SER ASP ARG PRO VAL SER LEU GLU ASP GLU SEQRES 2 A 208 VAL SER HIS SER MET LYS GLU MET ILE GLY GLY CYS CYS SEQRES 3 A 208 VAL CYS SER ASP GLU ARG GLY TRP ALA GLU ASN PRO LEU SEQRES 4 A 208 VAL TYR CYS ASP GLY HIS GLY CYS SER VAL ALA VAL HIS SEQRES 5 A 208 GLN ALA CYS TYR GLY ILE VAL GLN VAL PRO THR GLY PRO SEQRES 6 A 208 TRP PHE CYS ARG LYS CYS GLU SER GLN GLU ARG ALA ALA SEQRES 7 A 208 ARG VAL ARG CYS GLU LEU CYS PRO HIS LYS ASP GLY ALA SEQRES 8 A 208 LEU LYS ARG THR ASP ASN GLY GLY TRP ALA HIS VAL VAL SEQRES 9 A 208 CYS ALA LEU TYR ILE PRO GLU VAL GLN PHE ALA ASN VAL SEQRES 10 A 208 SER THR MET GLU PRO ILE VAL LEU GLN SER VAL PRO HIS SEQRES 11 A 208 ASP ARG TYR ASN LYS THR CYS TYR ILE CYS ASP GLU GLN SEQRES 12 A 208 GLY ARG GLU SER LYS ALA ALA THR GLY ALA CYS MET THR SEQRES 13 A 208 CYS ASN LYS HIS GLY CYS ARG GLN ALA PHE HIS VAL THR SEQRES 14 A 208 CYS ALA GLN PHE ALA GLY LEU LEU CYS GLU GLU GLU GLY SEQRES 15 A 208 ASN GLY ALA ASP ASN VAL GLN TYR CYS GLY TYR CYS LYS SEQRES 16 A 208 TYR HIS PHE SER LYS LEU LYS LYS SER LYS ARG GLY SER SEQRES 1 B 208 MET VAL SER SER ASP ARG PRO VAL SER LEU GLU ASP GLU SEQRES 2 B 208 VAL SER HIS SER MET LYS GLU MET ILE GLY GLY CYS CYS SEQRES 3 B 208 VAL CYS SER ASP GLU ARG GLY TRP ALA GLU ASN PRO LEU SEQRES 4 B 208 VAL TYR CYS ASP GLY HIS GLY CYS SER VAL ALA VAL HIS SEQRES 5 B 208 GLN ALA CYS TYR GLY ILE VAL GLN VAL PRO THR GLY PRO SEQRES 6 B 208 TRP PHE CYS ARG LYS CYS GLU SER GLN GLU ARG ALA ALA SEQRES 7 B 208 ARG VAL ARG CYS GLU LEU CYS PRO HIS LYS ASP GLY ALA SEQRES 8 B 208 LEU LYS ARG THR ASP ASN GLY GLY TRP ALA HIS VAL VAL SEQRES 9 B 208 CYS ALA LEU TYR ILE PRO GLU VAL GLN PHE ALA ASN VAL SEQRES 10 B 208 SER THR MET GLU PRO ILE VAL LEU GLN SER VAL PRO HIS SEQRES 11 B 208 ASP ARG TYR ASN LYS THR CYS TYR ILE CYS ASP GLU GLN SEQRES 12 B 208 GLY ARG GLU SER LYS ALA ALA THR GLY ALA CYS MET THR SEQRES 13 B 208 CYS ASN LYS HIS GLY CYS ARG GLN ALA PHE HIS VAL THR SEQRES 14 B 208 CYS ALA GLN PHE ALA GLY LEU LEU CYS GLU GLU GLU GLY SEQRES 15 B 208 ASN GLY ALA ASP ASN VAL GLN TYR CYS GLY TYR CYS LYS SEQRES 16 B 208 TYR HIS PHE SER LYS LEU LYS LYS SER LYS ARG GLY SER SEQRES 1 C 11 GLN LEU ALA THR LYS ALA ALA ARG LYS SER ALA SEQRES 1 D 11 GLN LEU ALA THR LYS ALA ALA ARG LYS SER ALA HET ZN A 301 1 HET ZN A 302 1 HET ZN A 303 1 HET ZN A 304 1 HET ZN A 305 1 HET SO4 A 306 5 HET SO4 A 307 5 HET ZN B 301 1 HET ZN B 302 1 HET ZN B 303 1 HET ZN B 304 1 HET ZN B 305 1 HET SO4 B 306 5 HETNAM ZN ZINC ION HETNAM SO4 SULFATE ION FORMUL 5 ZN 10(ZN 2+) FORMUL 10 SO4 3(O4 S 2-) FORMUL 18 HOH *81(H2 O) HELIX 1 AA1 ALA A 54 TYR A 56 5 3 HELIX 2 AA2 CYS A 68 SER A 73 1 6 HELIX 3 AA3 VAL A 103 ILE A 109 1 7 HELIX 4 AA4 PRO A 129 TYR A 133 5 5 HELIX 5 AA5 CYS A 137 GLN A 143 1 7 HELIX 6 AA6 SER A 147 THR A 151 5 5 HELIX 7 AA7 HIS A 167 ALA A 174 1 8 HELIX 8 AA8 GLN B 53 GLY B 57 1 5 HELIX 9 AA9 CYS B 68 GLN B 74 1 7 HELIX 10 AB1 VAL B 103 ILE B 109 1 7 HELIX 11 AB2 PRO B 129 TYR B 133 5 5 HELIX 12 AB3 CYS B 137 GLN B 143 1 7 HELIX 13 AB4 ARG B 145 THR B 151 1 7 HELIX 14 AB5 HIS B 167 ALA B 174 1 8 HELIX 15 AB6 THR D 22 LYS D 27 1 6 SHEET 1 AA1 2 LEU A 39 TYR A 41 0 SHEET 2 AA1 2 ALA A 50 HIS A 52 -1 O VAL A 51 N VAL A 40 SHEET 1 AA2 2 LEU A 92 ARG A 94 0 SHEET 2 AA2 2 TRP A 100 HIS A 102 -1 O ALA A 101 N LYS A 93 SHEET 1 AA3 2 GLN A 113 PHE A 114 0 SHEET 2 AA3 2 ILE A 123 VAL A 124 -1 O VAL A 124 N GLN A 113 SHEET 1 AA4 2 MET A 155 THR A 156 0 SHEET 2 AA4 2 ALA A 165 PHE A 166 -1 O PHE A 166 N MET A 155 SHEET 1 AA5 2 LEU A 177 GLU A 181 0 SHEET 2 AA5 2 VAL A 188 GLY A 192 -1 O GLN A 189 N GLU A 180 SHEET 1 AA6 2 LEU B 39 TYR B 41 0 SHEET 2 AA6 2 ALA B 50 HIS B 52 -1 O VAL B 51 N VAL B 40 SHEET 1 AA7 2 LEU B 92 ARG B 94 0 SHEET 2 AA7 2 TRP B 100 HIS B 102 -1 O ALA B 101 N LYS B 93 SHEET 1 AA8 2 GLN B 113 PHE B 114 0 SHEET 2 AA8 2 ILE B 123 VAL B 124 -1 O VAL B 124 N GLN B 113 SHEET 1 AA9 2 MET B 155 THR B 156 0 SHEET 2 AA9 2 ALA B 165 PHE B 166 -1 O PHE B 166 N MET B 155 SHEET 1 AB1 2 LEU B 177 GLU B 180 0 SHEET 2 AB1 2 GLN B 189 GLY B 192 -1 O GLN B 189 N GLU B 180 LINK SG CYS A 25 ZN ZN A 301 1555 1555 2.42 LINK SG CYS A 28 ZN ZN A 301 1555 1555 2.18 LINK SG CYS A 42 ZN ZN A 302 1555 1555 2.38 LINK SG CYS A 47 ZN ZN A 302 1555 1555 2.31 LINK ND1 HIS A 52 ZN ZN A 301 1555 1555 2.21 LINK SG CYS A 55 ZN ZN A 301 1555 1555 2.29 LINK SG CYS A 68 ZN ZN A 302 1555 1555 2.41 LINK SG CYS A 71 ZN ZN A 302 1555 1555 2.39 LINK SG CYS A 82 ZN ZN A 303 1555 1555 2.41 LINK SG CYS A 85 ZN ZN A 303 1555 1555 2.43 LINK ND1 HIS A 102 ZN ZN A 303 1555 1555 2.06 LINK SG CYS A 105 ZN ZN A 303 1555 1555 2.32 LINK SG CYS A 137 ZN ZN A 304 1555 1555 2.36 LINK SG CYS A 140 ZN ZN A 304 1555 1555 2.33 LINK SG CYS A 157 ZN ZN A 305 1555 1555 2.38 LINK SG CYS A 162 ZN ZN A 305 1555 1555 2.39 LINK ND1 HIS A 167 ZN ZN A 304 1555 1555 2.21 LINK SG CYS A 170 ZN ZN A 304 1555 1555 2.29 LINK SG CYS A 194 ZN ZN A 305 1555 1555 2.23 LINK ND1 HIS A 197 ZN ZN A 305 1555 1555 2.05 LINK SG CYS B 25 ZN ZN B 301 1555 1555 2.37 LINK SG CYS B 28 ZN ZN B 301 1555 1555 2.44 LINK SG CYS B 42 ZN ZN B 302 1555 1555 2.32 LINK SG CYS B 47 ZN ZN B 302 1555 1555 2.27 LINK ND1 HIS B 52 ZN ZN B 301 1555 1555 2.21 LINK SG CYS B 55 ZN ZN B 301 1555 1555 2.27 LINK SG CYS B 68 ZN ZN B 302 1555 1555 2.43 LINK SG CYS B 71 ZN ZN B 302 1555 1555 2.39 LINK SG CYS B 82 ZN ZN B 303 1555 1555 2.37 LINK SG CYS B 85 ZN ZN B 303 1555 1555 2.36 LINK ND1 HIS B 102 ZN ZN B 303 1555 1555 2.15 LINK SG CYS B 105 ZN ZN B 303 1555 1555 2.35 LINK SG CYS B 137 ZN ZN B 304 1555 1555 2.33 LINK SG CYS B 140 ZN ZN B 304 1555 1555 2.37 LINK SG CYS B 157 ZN ZN B 305 1555 1555 2.29 LINK SG CYS B 162 ZN ZN B 305 1555 1555 2.39 LINK ND1 HIS B 167 ZN ZN B 304 1555 1555 2.24 LINK SG CYS B 170 ZN ZN B 304 1555 1555 2.32 LINK SG CYS B 194 ZN ZN B 305 1555 1555 2.22 LINK ND1 HIS B 197 ZN ZN B 305 1555 1555 2.28 CISPEP 1 GLU A 121 PRO A 122 0 -11.90 CISPEP 2 GLU B 121 PRO B 122 0 -6.32 SITE 1 AC1 4 CYS A 25 CYS A 28 HIS A 52 CYS A 55 SITE 1 AC2 4 CYS A 42 CYS A 47 CYS A 68 CYS A 71 SITE 1 AC3 4 CYS A 82 CYS A 85 HIS A 102 CYS A 105 SITE 1 AC4 4 CYS A 137 CYS A 140 HIS A 167 CYS A 170 SITE 1 AC5 4 CYS A 157 CYS A 162 CYS A 194 HIS A 197 SITE 1 AC6 4 ARG A 145 GLU A 146 SER A 147 LYS A 148 SITE 1 AC7 3 ALA A 78 HIS A 160 GLY A 161 SITE 1 AC8 4 CYS B 25 CYS B 28 HIS B 52 CYS B 55 SITE 1 AC9 4 CYS B 42 CYS B 47 CYS B 68 CYS B 71 SITE 1 AD1 4 CYS B 82 CYS B 85 HIS B 102 CYS B 105 SITE 1 AD2 4 CYS B 137 CYS B 140 HIS B 167 CYS B 170 SITE 1 AD3 4 CYS B 157 CYS B 162 CYS B 194 HIS B 197 SITE 1 AD4 4 ARG B 145 GLU B 146 SER B 147 LYS B 148 CRYST1 42.905 79.995 59.287 90.00 102.01 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023307 0.000000 0.004956 0.00000 SCALE2 0.000000 0.012501 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017244 0.00000