PDB Short entry for 5DDY HEADER TRANSFERASE 15-AUG-14 5DDY TITLE BINARY COMPLEX OF HUMAN POLYMERASE LAMBDA WITH DCTP COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE LAMBDA; COMPND 3 CHAIN: A, C, E, G; COMPND 4 FRAGMENT: UNP RESIDUES 242-575; COMPND 5 SYNONYM: POL LAMBDA,DNA POLYMERASE BETA-2,POL BETA2,DNA POLYMERASE COMPND 6 KAPPA; COMPND 7 EC: 2.7.7.7; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: POLL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS POLYMERASE LAMBDA, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.S.LIU,M.D.TSAI REVDAT 3 08-NOV-23 5DDY 1 REMARK LINK REVDAT 2 09-MAR-16 5DDY 1 JRNL REVDAT 1 24-FEB-16 5DDY 0 JRNL AUTH M.S.LIU,H.Y.TSAI,X.X.LIU,M.C.HO,W.J.WU,M.D.TSAI JRNL TITL STRUCTURAL MECHANISM FOR THE FIDELITY MODULATION OF DNA JRNL TITL 2 POLYMERASE LAMBDA JRNL REF J.AM.CHEM.SOC. V. 138 2389 2016 JRNL REFN ESSN 1520-5126 JRNL PMID 26836966 JRNL DOI 10.1021/JACS.5B13368 REMARK 2 REMARK 2 RESOLUTION. 3.36 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.36 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.66 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.8 REMARK 3 NUMBER OF REFLECTIONS : 32255 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.264 REMARK 3 R VALUE (WORKING SET) : 0.262 REMARK 3 FREE R VALUE : 0.297 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.680 REMARK 3 FREE R VALUE TEST SET COUNT : 1832 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.6595 - 7.8548 0.95 2614 159 0.2084 0.2365 REMARK 3 2 7.8548 - 6.2538 0.98 2581 154 0.2604 0.3084 REMARK 3 3 6.2538 - 5.4689 0.97 2511 155 0.2736 0.2782 REMARK 3 4 5.4689 - 4.9714 0.96 2476 151 0.2477 0.2471 REMARK 3 5 4.9714 - 4.6165 0.95 2440 149 0.2448 0.2906 REMARK 3 6 4.6165 - 4.3452 0.94 2385 145 0.2586 0.3226 REMARK 3 7 4.3452 - 4.1282 0.92 2352 135 0.2741 0.2920 REMARK 3 8 4.1282 - 3.9489 0.90 2303 134 0.2883 0.3607 REMARK 3 9 3.9489 - 3.7972 0.87 2203 135 0.3189 0.3499 REMARK 3 10 3.7972 - 3.6664 0.88 2214 126 0.3138 0.3609 REMARK 3 11 3.6664 - 3.5520 0.86 2188 130 0.3590 0.3653 REMARK 3 12 3.5520 - 3.4506 0.84 2118 131 0.3688 0.4271 REMARK 3 13 3.4506 - 3.3599 0.81 2038 128 0.3870 0.4455 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.440 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 35.260 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 119.3 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 9254 REMARK 3 ANGLE : 0.630 12517 REMARK 3 CHIRALITY : 0.024 1356 REMARK 3 PLANARITY : 0.003 1616 REMARK 3 DIHEDRAL : 13.844 3475 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5DDY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-AUG-14. REMARK 100 THE DEPOSITION ID IS D_1000213065. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-OCT-12 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL13B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000, HKL REMARK 200 DATA SCALING SOFTWARE : HKL-2000, HKL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35439 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.360 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 11.00 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.37 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 9.80 REMARK 200 R MERGE FOR SHELL (I) : 0.82500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 1XSL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES, 3.0M SODIUM CHLORIDE, PH REMARK 280 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.13300 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 103.00750 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 103.00750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 85.69950 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 103.00750 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 103.00750 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 28.56650 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 103.00750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 103.00750 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 85.69950 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 103.00750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 103.00750 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 28.56650 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 57.13300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 241 REMARK 465 ALA A 242 REMARK 465 GLN A 243 REMARK 465 PRO A 244 REMARK 465 SER A 245 REMARK 465 SER A 246 REMARK 465 GLN A 247 REMARK 465 LYS A 248 REMARK 465 MET C 241 REMARK 465 ALA C 242 REMARK 465 GLN C 243 REMARK 465 PRO C 244 REMARK 465 SER C 245 REMARK 465 SER C 246 REMARK 465 GLN C 247 REMARK 465 LYS C 248 REMARK 465 MET E 241 REMARK 465 ALA E 242 REMARK 465 GLN E 243 REMARK 465 PRO E 244 REMARK 465 SER E 245 REMARK 465 SER E 246 REMARK 465 GLN E 247 REMARK 465 LYS E 248 REMARK 465 ALA E 249 REMARK 465 THR E 250 REMARK 465 ASN E 251 REMARK 465 HIS E 252 REMARK 465 ASN E 253 REMARK 465 LEU E 254 REMARK 465 HIS E 255 REMARK 465 ILE E 256 REMARK 465 THR E 257 REMARK 465 GLU E 258 REMARK 465 LYS E 259 REMARK 465 LEU E 260 REMARK 465 GLU E 261 REMARK 465 VAL E 262 REMARK 465 LEU E 263 REMARK 465 ALA E 264 REMARK 465 LYS E 265 REMARK 465 ALA E 266 REMARK 465 TYR E 267 REMARK 465 SER E 268 REMARK 465 VAL E 269 REMARK 465 GLN E 270 REMARK 465 GLY E 271 REMARK 465 ASP E 272 REMARK 465 LYS E 273 REMARK 465 TRP E 274 REMARK 465 ARG E 275 REMARK 465 ALA E 276 REMARK 465 LEU E 277 REMARK 465 GLY E 278 REMARK 465 TYR E 279 REMARK 465 ALA E 280 REMARK 465 LYS E 281 REMARK 465 ALA E 282 REMARK 465 ILE E 283 REMARK 465 ASN E 284 REMARK 465 ALA E 285 REMARK 465 LEU E 286 REMARK 465 LYS E 287 REMARK 465 SER E 288 REMARK 465 PHE E 289 REMARK 465 HIS E 290 REMARK 465 LYS E 291 REMARK 465 PRO E 292 REMARK 465 VAL E 293 REMARK 465 THR E 294 REMARK 465 SER E 295 REMARK 465 TYR E 296 REMARK 465 GLN E 297 REMARK 465 GLU E 298 REMARK 465 ALA E 299 REMARK 465 CYS E 300 REMARK 465 SER E 301 REMARK 465 ILE E 302 REMARK 465 PRO E 303 REMARK 465 GLY E 304 REMARK 465 ILE E 305 REMARK 465 GLY E 306 REMARK 465 LYS E 307 REMARK 465 ARG E 308 REMARK 465 MET E 309 REMARK 465 ALA E 310 REMARK 465 GLU E 311 REMARK 465 LYS E 312 REMARK 465 ILE E 313 REMARK 465 ILE E 314 REMARK 465 GLU E 315 REMARK 465 ILE E 316 REMARK 465 LEU E 317 REMARK 465 GLU E 318 REMARK 465 SER E 319 REMARK 465 GLY E 320 REMARK 465 HIS E 321 REMARK 465 LEU E 322 REMARK 465 ARG E 323 REMARK 465 LYS E 324 REMARK 465 LEU E 325 REMARK 465 ASP E 326 REMARK 465 HIS E 327 REMARK 465 ILE E 328 REMARK 465 SER E 329 REMARK 465 GLU E 330 REMARK 465 SER E 331 REMARK 465 MET G 241 REMARK 465 ALA G 242 REMARK 465 GLN G 243 REMARK 465 PRO G 244 REMARK 465 SER G 245 REMARK 465 SER G 246 REMARK 465 GLN G 247 REMARK 465 LYS G 248 REMARK 465 ALA G 249 REMARK 465 THR G 250 REMARK 465 ASN G 251 REMARK 465 HIS G 252 REMARK 465 ASN G 253 REMARK 465 LEU G 254 REMARK 465 HIS G 255 REMARK 465 ILE G 256 REMARK 465 THR G 257 REMARK 465 GLU G 258 REMARK 465 LYS G 259 REMARK 465 LEU G 260 REMARK 465 GLU G 261 REMARK 465 VAL G 262 REMARK 465 LEU G 263 REMARK 465 ALA G 264 REMARK 465 LYS G 265 REMARK 465 ALA G 266 REMARK 465 TYR G 267 REMARK 465 SER G 268 REMARK 465 VAL G 269 REMARK 465 GLN G 270 REMARK 465 GLY G 271 REMARK 465 ASP G 272 REMARK 465 LYS G 273 REMARK 465 TRP G 274 REMARK 465 ARG G 275 REMARK 465 ALA G 276 REMARK 465 LEU G 277 REMARK 465 GLY G 278 REMARK 465 TYR G 279 REMARK 465 ALA G 280 REMARK 465 LYS G 281 REMARK 465 ALA G 282 REMARK 465 ILE G 283 REMARK 465 ASN G 284 REMARK 465 ALA G 285 REMARK 465 LEU G 286 REMARK 465 LYS G 287 REMARK 465 SER G 288 REMARK 465 PHE G 289 REMARK 465 HIS G 290 REMARK 465 LYS G 291 REMARK 465 PRO G 292 REMARK 465 VAL G 293 REMARK 465 THR G 294 REMARK 465 SER G 295 REMARK 465 TYR G 296 REMARK 465 GLN G 297 REMARK 465 GLU G 298 REMARK 465 ALA G 299 REMARK 465 CYS G 300 REMARK 465 SER G 301 REMARK 465 ILE G 302 REMARK 465 PRO G 303 REMARK 465 GLY G 304 REMARK 465 ILE G 305 REMARK 465 GLY G 306 REMARK 465 LYS G 307 REMARK 465 ARG G 308 REMARK 465 MET G 309 REMARK 465 ALA G 310 REMARK 465 GLU G 311 REMARK 465 LYS G 312 REMARK 465 ILE G 313 REMARK 465 ILE G 314 REMARK 465 GLU G 315 REMARK 465 ILE G 316 REMARK 465 LEU G 317 REMARK 465 GLU G 318 REMARK 465 SER G 319 REMARK 465 GLY G 320 REMARK 465 HIS G 321 REMARK 465 LEU G 322 REMARK 465 ARG G 323 REMARK 465 LYS G 324 REMARK 465 LEU G 325 REMARK 465 ASP G 326 REMARK 465 HIS G 327 REMARK 465 ILE G 328 REMARK 465 SER G 329 REMARK 465 GLU G 330 REMARK 465 SER G 331 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 321 CG ND1 CD2 CE1 NE2 REMARK 470 LEU A 322 CG CD1 CD2 REMARK 470 ARG A 323 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 464 CG CD OE1 NE2 REMARK 470 LEU C 322 CG CD1 CD2 REMARK 470 ARG C 323 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 324 CG CD CE NZ REMARK 470 LEU C 325 CG CD1 CD2 REMARK 470 LEU C 461 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU G 556 NH2 ARG G 573 1.53 REMARK 500 OG SER G 528 O ALA G 531 1.95 REMARK 500 O TYR G 353 NH1 ARG G 358 1.96 REMARK 500 OG SER E 528 O ALA E 531 2.01 REMARK 500 OD1 ASN C 539 N GLY C 542 2.07 REMARK 500 O LEU G 411 CD1 ILE G 432 2.13 REMARK 500 OG1 THR G 433 O VAL G 494 2.14 REMARK 500 OE1 GLU G 556 CZ ARG G 573 2.16 REMARK 500 OD1 ASN C 539 N CYS C 543 2.17 REMARK 500 O GLU A 394 OG1 THR A 398 2.19 REMARK 500 C LEU G 411 CD1 ILE G 432 2.19 REMARK 500 OG1 THR C 555 OD2 ASP C 558 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NE ARG C 561 NE2 GLN G 355 3454 1.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 326 -138.25 56.32 REMARK 500 PRO G 388 -158.09 -72.34 REMARK 500 ASP G 429 78.86 -109.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 601 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 427 OD1 REMARK 620 2 ASP A 429 OD2 83.5 REMARK 620 3 DCP A 603 O2G 62.5 128.7 REMARK 620 4 DCP A 603 O2A 70.3 70.2 62.9 REMARK 620 5 DCP A 603 O2B 118.1 114.4 60.9 63.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 602 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 429 OD1 REMARK 620 2 ASP A 490 OD2 76.3 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 601 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 427 O REMARK 620 2 ASP C 427 OD1 70.6 REMARK 620 3 ASP C 429 OD1 102.0 83.9 REMARK 620 4 DCP C 603 O2B 157.5 122.6 97.8 REMARK 620 5 DCP C 603 O2A 138.1 68.0 67.9 60.3 REMARK 620 6 DCP C 603 O2G 105.5 70.1 132.6 67.4 65.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN C 602 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 427 OD2 REMARK 620 2 ASP C 429 OD2 110.9 REMARK 620 3 ASP C 490 OD2 76.7 85.1 REMARK 620 4 DCP C 603 O2A 92.8 96.6 169.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG E 601 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP E 427 OD1 REMARK 620 2 ASP E 429 OD2 84.0 REMARK 620 3 DCP E 603 O2B 127.3 100.7 REMARK 620 4 DCP E 603 O2A 69.4 68.2 64.3 REMARK 620 5 DCP E 603 O2G 75.8 139.5 67.1 71.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN E 602 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP E 427 OD2 REMARK 620 2 ASP E 429 OD1 97.5 REMARK 620 3 ASP E 490 OD2 90.9 88.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG G 601 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP G 427 O REMARK 620 2 ASP G 427 OD1 69.3 REMARK 620 3 ASP G 429 OD2 70.3 66.8 REMARK 620 4 DCP G 603 O2B 173.2 105.5 112.2 REMARK 620 5 DCP G 603 O2G 104.7 74.9 140.8 69.3 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DCP A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG C 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN C 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DCP C 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN C 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG E 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN E 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DCP E 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN E 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG G 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN G 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DCP G 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN G 604 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5DDM RELATED DB: PDB REMARK 900 5DDM CONTAINS HUMAN DNA POLYMERASE LAMBDA- APOENZYME AND COMPLEX REMARK 900 WITH 6 PAIRED DNA DBREF 5DDY A 242 575 UNP Q9UGP5 DPOLL_HUMAN 242 575 DBREF 5DDY C 242 575 UNP Q9UGP5 DPOLL_HUMAN 242 575 DBREF 5DDY E 242 575 UNP Q9UGP5 DPOLL_HUMAN 242 575 DBREF 5DDY G 242 575 UNP Q9UGP5 DPOLL_HUMAN 242 575 SEQADV 5DDY MET A 241 UNP Q9UGP5 EXPRESSION TAG SEQADV 5DDY MET C 241 UNP Q9UGP5 EXPRESSION TAG SEQADV 5DDY MET E 241 UNP Q9UGP5 EXPRESSION TAG SEQADV 5DDY MET G 241 UNP Q9UGP5 EXPRESSION TAG SEQRES 1 A 335 MET ALA GLN PRO SER SER GLN LYS ALA THR ASN HIS ASN SEQRES 2 A 335 LEU HIS ILE THR GLU LYS LEU GLU VAL LEU ALA LYS ALA SEQRES 3 A 335 TYR SER VAL GLN GLY ASP LYS TRP ARG ALA LEU GLY TYR SEQRES 4 A 335 ALA LYS ALA ILE ASN ALA LEU LYS SER PHE HIS LYS PRO SEQRES 5 A 335 VAL THR SER TYR GLN GLU ALA CYS SER ILE PRO GLY ILE SEQRES 6 A 335 GLY LYS ARG MET ALA GLU LYS ILE ILE GLU ILE LEU GLU SEQRES 7 A 335 SER GLY HIS LEU ARG LYS LEU ASP HIS ILE SER GLU SER SEQRES 8 A 335 VAL PRO VAL LEU GLU LEU PHE SER ASN ILE TRP GLY ALA SEQRES 9 A 335 GLY THR LYS THR ALA GLN MET TRP TYR GLN GLN GLY PHE SEQRES 10 A 335 ARG SER LEU GLU ASP ILE ARG SER GLN ALA SER LEU THR SEQRES 11 A 335 THR GLN GLN ALA ILE GLY LEU LYS HIS TYR SER ASP PHE SEQRES 12 A 335 LEU GLU ARG MET PRO ARG GLU GLU ALA THR GLU ILE GLU SEQRES 13 A 335 GLN THR VAL GLN LYS ALA ALA GLN ALA PHE ASN SER GLY SEQRES 14 A 335 LEU LEU CYS VAL ALA CYS GLY SER TYR ARG ARG GLY LYS SEQRES 15 A 335 ALA THR CYS GLY ASP VAL ASP VAL LEU ILE THR HIS PRO SEQRES 16 A 335 ASP GLY ARG SER HIS ARG GLY ILE PHE SER ARG LEU LEU SEQRES 17 A 335 ASP SER LEU ARG GLN GLU GLY PHE LEU THR ASP ASP LEU SEQRES 18 A 335 VAL SER GLN GLU GLU ASN GLY GLN GLN GLN LYS TYR LEU SEQRES 19 A 335 GLY VAL CYS ARG LEU PRO GLY PRO GLY ARG ARG HIS ARG SEQRES 20 A 335 ARG LEU ASP ILE ILE VAL VAL PRO TYR SER GLU PHE ALA SEQRES 21 A 335 CYS ALA LEU LEU TYR PHE THR GLY SER ALA HIS PHE ASN SEQRES 22 A 335 ARG SER MET ARG ALA LEU ALA LYS THR LYS GLY MET SER SEQRES 23 A 335 LEU SER GLU HIS ALA LEU SER THR ALA VAL VAL ARG ASN SEQRES 24 A 335 THR HIS GLY CYS LYS VAL GLY PRO GLY ARG VAL LEU PRO SEQRES 25 A 335 THR PRO THR GLU LYS ASP VAL PHE ARG LEU LEU GLY LEU SEQRES 26 A 335 PRO TYR ARG GLU PRO ALA GLU ARG ASP TRP SEQRES 1 C 335 MET ALA GLN PRO SER SER GLN LYS ALA THR ASN HIS ASN SEQRES 2 C 335 LEU HIS ILE THR GLU LYS LEU GLU VAL LEU ALA LYS ALA SEQRES 3 C 335 TYR SER VAL GLN GLY ASP LYS TRP ARG ALA LEU GLY TYR SEQRES 4 C 335 ALA LYS ALA ILE ASN ALA LEU LYS SER PHE HIS LYS PRO SEQRES 5 C 335 VAL THR SER TYR GLN GLU ALA CYS SER ILE PRO GLY ILE SEQRES 6 C 335 GLY LYS ARG MET ALA GLU LYS ILE ILE GLU ILE LEU GLU SEQRES 7 C 335 SER GLY HIS LEU ARG LYS LEU ASP HIS ILE SER GLU SER SEQRES 8 C 335 VAL PRO VAL LEU GLU LEU PHE SER ASN ILE TRP GLY ALA SEQRES 9 C 335 GLY THR LYS THR ALA GLN MET TRP TYR GLN GLN GLY PHE SEQRES 10 C 335 ARG SER LEU GLU ASP ILE ARG SER GLN ALA SER LEU THR SEQRES 11 C 335 THR GLN GLN ALA ILE GLY LEU LYS HIS TYR SER ASP PHE SEQRES 12 C 335 LEU GLU ARG MET PRO ARG GLU GLU ALA THR GLU ILE GLU SEQRES 13 C 335 GLN THR VAL GLN LYS ALA ALA GLN ALA PHE ASN SER GLY SEQRES 14 C 335 LEU LEU CYS VAL ALA CYS GLY SER TYR ARG ARG GLY LYS SEQRES 15 C 335 ALA THR CYS GLY ASP VAL ASP VAL LEU ILE THR HIS PRO SEQRES 16 C 335 ASP GLY ARG SER HIS ARG GLY ILE PHE SER ARG LEU LEU SEQRES 17 C 335 ASP SER LEU ARG GLN GLU GLY PHE LEU THR ASP ASP LEU SEQRES 18 C 335 VAL SER GLN GLU GLU ASN GLY GLN GLN GLN LYS TYR LEU SEQRES 19 C 335 GLY VAL CYS ARG LEU PRO GLY PRO GLY ARG ARG HIS ARG SEQRES 20 C 335 ARG LEU ASP ILE ILE VAL VAL PRO TYR SER GLU PHE ALA SEQRES 21 C 335 CYS ALA LEU LEU TYR PHE THR GLY SER ALA HIS PHE ASN SEQRES 22 C 335 ARG SER MET ARG ALA LEU ALA LYS THR LYS GLY MET SER SEQRES 23 C 335 LEU SER GLU HIS ALA LEU SER THR ALA VAL VAL ARG ASN SEQRES 24 C 335 THR HIS GLY CYS LYS VAL GLY PRO GLY ARG VAL LEU PRO SEQRES 25 C 335 THR PRO THR GLU LYS ASP VAL PHE ARG LEU LEU GLY LEU SEQRES 26 C 335 PRO TYR ARG GLU PRO ALA GLU ARG ASP TRP SEQRES 1 E 335 MET ALA GLN PRO SER SER GLN LYS ALA THR ASN HIS ASN SEQRES 2 E 335 LEU HIS ILE THR GLU LYS LEU GLU VAL LEU ALA LYS ALA SEQRES 3 E 335 TYR SER VAL GLN GLY ASP LYS TRP ARG ALA LEU GLY TYR SEQRES 4 E 335 ALA LYS ALA ILE ASN ALA LEU LYS SER PHE HIS LYS PRO SEQRES 5 E 335 VAL THR SER TYR GLN GLU ALA CYS SER ILE PRO GLY ILE SEQRES 6 E 335 GLY LYS ARG MET ALA GLU LYS ILE ILE GLU ILE LEU GLU SEQRES 7 E 335 SER GLY HIS LEU ARG LYS LEU ASP HIS ILE SER GLU SER SEQRES 8 E 335 VAL PRO VAL LEU GLU LEU PHE SER ASN ILE TRP GLY ALA SEQRES 9 E 335 GLY THR LYS THR ALA GLN MET TRP TYR GLN GLN GLY PHE SEQRES 10 E 335 ARG SER LEU GLU ASP ILE ARG SER GLN ALA SER LEU THR SEQRES 11 E 335 THR GLN GLN ALA ILE GLY LEU LYS HIS TYR SER ASP PHE SEQRES 12 E 335 LEU GLU ARG MET PRO ARG GLU GLU ALA THR GLU ILE GLU SEQRES 13 E 335 GLN THR VAL GLN LYS ALA ALA GLN ALA PHE ASN SER GLY SEQRES 14 E 335 LEU LEU CYS VAL ALA CYS GLY SER TYR ARG ARG GLY LYS SEQRES 15 E 335 ALA THR CYS GLY ASP VAL ASP VAL LEU ILE THR HIS PRO SEQRES 16 E 335 ASP GLY ARG SER HIS ARG GLY ILE PHE SER ARG LEU LEU SEQRES 17 E 335 ASP SER LEU ARG GLN GLU GLY PHE LEU THR ASP ASP LEU SEQRES 18 E 335 VAL SER GLN GLU GLU ASN GLY GLN GLN GLN LYS TYR LEU SEQRES 19 E 335 GLY VAL CYS ARG LEU PRO GLY PRO GLY ARG ARG HIS ARG SEQRES 20 E 335 ARG LEU ASP ILE ILE VAL VAL PRO TYR SER GLU PHE ALA SEQRES 21 E 335 CYS ALA LEU LEU TYR PHE THR GLY SER ALA HIS PHE ASN SEQRES 22 E 335 ARG SER MET ARG ALA LEU ALA LYS THR LYS GLY MET SER SEQRES 23 E 335 LEU SER GLU HIS ALA LEU SER THR ALA VAL VAL ARG ASN SEQRES 24 E 335 THR HIS GLY CYS LYS VAL GLY PRO GLY ARG VAL LEU PRO SEQRES 25 E 335 THR PRO THR GLU LYS ASP VAL PHE ARG LEU LEU GLY LEU SEQRES 26 E 335 PRO TYR ARG GLU PRO ALA GLU ARG ASP TRP SEQRES 1 G 335 MET ALA GLN PRO SER SER GLN LYS ALA THR ASN HIS ASN SEQRES 2 G 335 LEU HIS ILE THR GLU LYS LEU GLU VAL LEU ALA LYS ALA SEQRES 3 G 335 TYR SER VAL GLN GLY ASP LYS TRP ARG ALA LEU GLY TYR SEQRES 4 G 335 ALA LYS ALA ILE ASN ALA LEU LYS SER PHE HIS LYS PRO SEQRES 5 G 335 VAL THR SER TYR GLN GLU ALA CYS SER ILE PRO GLY ILE SEQRES 6 G 335 GLY LYS ARG MET ALA GLU LYS ILE ILE GLU ILE LEU GLU SEQRES 7 G 335 SER GLY HIS LEU ARG LYS LEU ASP HIS ILE SER GLU SER SEQRES 8 G 335 VAL PRO VAL LEU GLU LEU PHE SER ASN ILE TRP GLY ALA SEQRES 9 G 335 GLY THR LYS THR ALA GLN MET TRP TYR GLN GLN GLY PHE SEQRES 10 G 335 ARG SER LEU GLU ASP ILE ARG SER GLN ALA SER LEU THR SEQRES 11 G 335 THR GLN GLN ALA ILE GLY LEU LYS HIS TYR SER ASP PHE SEQRES 12 G 335 LEU GLU ARG MET PRO ARG GLU GLU ALA THR GLU ILE GLU SEQRES 13 G 335 GLN THR VAL GLN LYS ALA ALA GLN ALA PHE ASN SER GLY SEQRES 14 G 335 LEU LEU CYS VAL ALA CYS GLY SER TYR ARG ARG GLY LYS SEQRES 15 G 335 ALA THR CYS GLY ASP VAL ASP VAL LEU ILE THR HIS PRO SEQRES 16 G 335 ASP GLY ARG SER HIS ARG GLY ILE PHE SER ARG LEU LEU SEQRES 17 G 335 ASP SER LEU ARG GLN GLU GLY PHE LEU THR ASP ASP LEU SEQRES 18 G 335 VAL SER GLN GLU GLU ASN GLY GLN GLN GLN LYS TYR LEU SEQRES 19 G 335 GLY VAL CYS ARG LEU PRO GLY PRO GLY ARG ARG HIS ARG SEQRES 20 G 335 ARG LEU ASP ILE ILE VAL VAL PRO TYR SER GLU PHE ALA SEQRES 21 G 335 CYS ALA LEU LEU TYR PHE THR GLY SER ALA HIS PHE ASN SEQRES 22 G 335 ARG SER MET ARG ALA LEU ALA LYS THR LYS GLY MET SER SEQRES 23 G 335 LEU SER GLU HIS ALA LEU SER THR ALA VAL VAL ARG ASN SEQRES 24 G 335 THR HIS GLY CYS LYS VAL GLY PRO GLY ARG VAL LEU PRO SEQRES 25 G 335 THR PRO THR GLU LYS ASP VAL PHE ARG LEU LEU GLY LEU SEQRES 26 G 335 PRO TYR ARG GLU PRO ALA GLU ARG ASP TRP HET MG A 601 1 HET MN A 602 1 HET DCP A 603 28 HET MN A 604 1 HET MG C 601 1 HET MN C 602 1 HET DCP C 603 28 HET MN C 604 1 HET MG E 601 1 HET MN E 602 1 HET DCP E 603 28 HET MN E 604 1 HET MG G 601 1 HET MN G 602 1 HET DCP G 603 28 HET MN G 604 1 HETNAM MG MAGNESIUM ION HETNAM MN MANGANESE (II) ION HETNAM DCP 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE FORMUL 5 MG 4(MG 2+) FORMUL 6 MN 8(MN 2+) FORMUL 7 DCP 4(C9 H16 N3 O13 P3) FORMUL 21 HOH *3(H2 O) HELIX 1 AA1 ASN A 253 GLY A 271 1 19 HELIX 2 AA2 ASP A 272 SER A 288 1 17 HELIX 3 AA3 SER A 295 ILE A 302 1 8 HELIX 4 AA4 ARG A 308 SER A 319 1 12 HELIX 5 AA5 HIS A 327 ASN A 340 1 14 HELIX 6 AA6 GLY A 345 GLY A 356 1 12 HELIX 7 AA7 SER A 359 GLN A 366 1 8 HELIX 8 AA8 THR A 370 HIS A 379 1 10 HELIX 9 AA9 HIS A 379 LEU A 384 1 6 HELIX 10 AB1 ARG A 389 ALA A 405 1 17 HELIX 11 AB2 GLY A 442 GLU A 454 1 13 HELIX 12 AB3 GLU A 498 GLY A 508 1 11 HELIX 13 AB4 SER A 509 LYS A 521 1 13 HELIX 14 AB5 THR A 555 LEU A 563 1 9 HELIX 15 AB6 GLU A 569 ARG A 573 5 5 HELIX 16 AB7 ASN C 253 GLY C 271 1 19 HELIX 17 AB8 ASP C 272 PHE C 289 1 18 HELIX 18 AB9 SER C 295 ILE C 302 1 8 HELIX 19 AC1 ARG C 308 GLY C 320 1 13 HELIX 20 AC2 SER C 331 ASN C 340 1 10 HELIX 21 AC3 GLY C 345 GLY C 356 1 12 HELIX 22 AC4 LEU C 360 ALA C 367 1 8 HELIX 23 AC5 THR C 370 GLY C 376 1 7 HELIX 24 AC6 HIS C 379 LEU C 384 1 6 HELIX 25 AC7 ARG C 389 ASN C 407 1 19 HELIX 26 AC8 GLY C 416 GLY C 421 5 6 HELIX 27 AC9 GLY C 442 GLU C 454 1 13 HELIX 28 AD1 PRO C 495 SER C 497 5 3 HELIX 29 AD2 GLU C 498 GLY C 508 1 11 HELIX 30 AD3 SER C 509 LYS C 523 1 15 HELIX 31 AD4 THR C 555 LEU C 563 1 9 HELIX 32 AD5 GLU C 569 ARG C 573 5 5 HELIX 33 AD6 PRO E 333 ASN E 340 1 8 HELIX 34 AD7 GLY E 345 GLY E 356 1 12 HELIX 35 AD8 SER E 359 GLN E 366 1 8 HELIX 36 AD9 THR E 370 HIS E 379 1 10 HELIX 37 AE1 HIS E 379 LEU E 384 1 6 HELIX 38 AE2 ARG E 389 ASN E 407 1 19 HELIX 39 AE3 GLY E 442 GLU E 454 1 13 HELIX 40 AE4 GLU E 498 GLY E 508 1 11 HELIX 41 AE5 SER E 509 LYS E 521 1 13 HELIX 42 AE6 THR E 555 LEU E 563 1 9 HELIX 43 AE7 GLU E 569 ASP E 574 5 6 HELIX 44 AE8 PRO G 333 ASN G 340 1 8 HELIX 45 AE9 GLY G 345 GLY G 356 1 12 HELIX 46 AF1 SER G 359 GLN G 366 1 8 HELIX 47 AF2 THR G 370 HIS G 379 1 10 HELIX 48 AF3 HIS G 379 LEU G 384 1 6 HELIX 49 AF4 ARG G 389 ASN G 407 1 19 HELIX 50 AF5 ILE G 443 GLU G 454 1 12 HELIX 51 AF6 GLU G 498 GLY G 508 1 11 HELIX 52 AF7 SER G 509 THR G 522 1 14 HELIX 53 AF8 THR G 555 LEU G 563 1 9 HELIX 54 AF9 GLU G 569 ASP G 574 5 6 SHEET 1 AA1 2 MET A 387 PRO A 388 0 SHEET 2 AA1 2 THR A 424 CYS A 425 -1 O CYS A 425 N MET A 387 SHEET 1 AA2 5 LEU A 411 ALA A 414 0 SHEET 2 AA2 5 VAL A 428 THR A 433 -1 O LEU A 431 N VAL A 413 SHEET 3 AA2 5 HIS A 486 VAL A 493 1 O ILE A 492 N ILE A 432 SHEET 4 AA2 5 GLN A 470 ARG A 478 -1 N GLY A 475 O LEU A 489 SHEET 5 AA2 5 LEU A 457 ASN A 467 -1 N ASN A 467 O GLN A 470 SHEET 1 AA3 2 MET A 525 LEU A 527 0 SHEET 2 AA3 2 LEU A 532 THR A 534 -1 O SER A 533 N SER A 526 SHEET 1 AA4 2 VAL A 537 ARG A 538 0 SHEET 2 AA4 2 LYS A 544 GLY A 546 -1 O GLY A 546 N VAL A 537 SHEET 1 AA5 2 MET C 387 PRO C 388 0 SHEET 2 AA5 2 THR C 424 CYS C 425 -1 O CYS C 425 N MET C 387 SHEET 1 AA6 5 LEU C 411 ALA C 414 0 SHEET 2 AA6 5 ASP C 427 THR C 433 -1 O LEU C 431 N VAL C 413 SHEET 3 AA6 5 HIS C 486 VAL C 493 1 O ASP C 490 N VAL C 430 SHEET 4 AA6 5 GLN C 470 TYR C 473 -1 N TYR C 473 O ILE C 491 SHEET 5 AA6 5 GLU C 466 ASN C 467 -1 N ASN C 467 O GLN C 470 SHEET 1 AA7 4 LEU C 411 ALA C 414 0 SHEET 2 AA7 4 ASP C 427 THR C 433 -1 O LEU C 431 N VAL C 413 SHEET 3 AA7 4 HIS C 486 VAL C 493 1 O ASP C 490 N VAL C 430 SHEET 4 AA7 4 VAL C 476 ARG C 478 -1 N CYS C 477 O ARG C 487 SHEET 1 AA8 2 MET C 525 LEU C 527 0 SHEET 2 AA8 2 LEU C 532 THR C 534 -1 O SER C 533 N SER C 526 SHEET 1 AA9 2 MET E 387 PRO E 388 0 SHEET 2 AA9 2 THR E 424 CYS E 425 -1 O CYS E 425 N MET E 387 SHEET 1 AB1 5 LEU E 411 ALA E 414 0 SHEET 2 AB1 5 VAL E 428 THR E 433 -1 O THR E 433 N LEU E 411 SHEET 3 AB1 5 ARG E 487 VAL E 493 1 O ILE E 492 N ILE E 432 SHEET 4 AB1 5 GLN E 470 CYS E 477 -1 N GLY E 475 O LEU E 489 SHEET 5 AB1 5 ASP E 460 VAL E 462 -1 N LEU E 461 O LEU E 474 SHEET 1 AB2 5 LEU E 411 ALA E 414 0 SHEET 2 AB2 5 VAL E 428 THR E 433 -1 O THR E 433 N LEU E 411 SHEET 3 AB2 5 ARG E 487 VAL E 493 1 O ILE E 492 N ILE E 432 SHEET 4 AB2 5 GLN E 470 CYS E 477 -1 N GLY E 475 O LEU E 489 SHEET 5 AB2 5 GLU E 466 ASN E 467 -1 N ASN E 467 O GLN E 470 SHEET 1 AB3 3 MET E 525 LEU E 527 0 SHEET 2 AB3 3 LEU E 532 THR E 534 -1 O SER E 533 N SER E 526 SHEET 3 AB3 3 VAL E 550 LEU E 551 -1 O LEU E 551 N LEU E 532 SHEET 1 AB4 5 LEU G 411 ALA G 414 0 SHEET 2 AB4 5 VAL G 428 THR G 433 -1 O LEU G 431 N VAL G 413 SHEET 3 AB4 5 HIS G 486 VAL G 493 1 O ASP G 490 N VAL G 428 SHEET 4 AB4 5 GLN G 470 ARG G 478 -1 N CYS G 477 O ARG G 487 SHEET 5 AB4 5 LEU G 457 VAL G 462 -1 N ASP G 459 O VAL G 476 SHEET 1 AB5 5 LEU G 411 ALA G 414 0 SHEET 2 AB5 5 VAL G 428 THR G 433 -1 O LEU G 431 N VAL G 413 SHEET 3 AB5 5 HIS G 486 VAL G 493 1 O ASP G 490 N VAL G 428 SHEET 4 AB5 5 GLN G 470 ARG G 478 -1 N CYS G 477 O ARG G 487 SHEET 5 AB5 5 GLU G 466 ASN G 467 -1 N ASN G 467 O GLN G 470 SHEET 1 AB6 3 MET G 525 LEU G 527 0 SHEET 2 AB6 3 LEU G 532 THR G 534 -1 O SER G 533 N SER G 526 SHEET 3 AB6 3 VAL G 550 LEU G 551 -1 O LEU G 551 N LEU G 532 SSBOND 1 CYS A 543 CYS G 543 1555 7555 2.03 SSBOND 2 CYS C 543 CYS E 543 1555 3454 2.03 LINK O SER A 339 MN MN A 604 1555 1555 2.68 LINK OD1 ASP A 427 MG MG A 601 1555 1555 2.29 LINK OD2 ASP A 429 MG MG A 601 1555 1555 2.30 LINK OD1 ASP A 429 MN MN A 602 1555 1555 2.52 LINK OD2 ASP A 490 MN MN A 602 1555 1555 2.45 LINK MG MG A 601 O2G DCP A 603 1555 1555 2.78 LINK MG MG A 601 O2A DCP A 603 1555 1555 2.59 LINK MG MG A 601 O2B DCP A 603 1555 1555 2.22 LINK O ASP C 427 MG MG C 601 1555 1555 2.70 LINK OD1 ASP C 427 MG MG C 601 1555 1555 2.22 LINK OD2 ASP C 427 MN MN C 602 1555 1555 2.37 LINK OD1 ASP C 429 MG MG C 601 1555 1555 2.39 LINK OD2 ASP C 429 MN MN C 602 1555 1555 2.13 LINK OD2 ASP C 490 MN MN C 602 1555 1555 2.38 LINK MG MG C 601 O2B DCP C 603 1555 1555 2.23 LINK MG MG C 601 O2A DCP C 603 1555 1555 2.70 LINK MG MG C 601 O2G DCP C 603 1555 1555 2.42 LINK MN MN C 602 O2A DCP C 603 1555 1555 2.67 LINK OD1 ASP E 427 MG MG E 601 1555 1555 2.01 LINK OD2 ASP E 427 MN MN E 602 1555 1555 2.62 LINK OD2 ASP E 429 MG MG E 601 1555 1555 2.21 LINK OD1 ASP E 429 MN MN E 602 1555 1555 2.27 LINK OD2 ASP E 490 MN MN E 602 1555 1555 2.13 LINK MG MG E 601 O2B DCP E 603 1555 1555 2.07 LINK MG MG E 601 O2A DCP E 603 1555 1555 2.64 LINK MG MG E 601 O2G DCP E 603 1555 1555 2.58 LINK O ASP G 427 MG MG G 601 1555 1555 2.72 LINK OD1 ASP G 427 MG MG G 601 1555 1555 2.29 LINK OD2 ASP G 429 MG MG G 601 1555 1555 2.62 LINK OD2 ASP G 490 MN MN G 602 1555 1555 2.16 LINK MG MG G 601 O2B DCP G 603 1555 1555 2.16 LINK MG MG G 601 O2G DCP G 603 1555 1555 2.40 CISPEP 1 HIS A 321 LEU A 322 0 3.02 CISPEP 2 GLY A 508 SER A 509 0 -2.60 CISPEP 3 LEU C 325 ASP C 326 0 -0.75 CISPEP 4 GLY C 508 SER C 509 0 2.56 CISPEP 5 GLY E 508 SER E 509 0 -2.70 CISPEP 6 GLY E 546 PRO E 547 0 -2.05 CISPEP 7 GLY G 481 PRO G 482 0 -6.77 CISPEP 8 GLY G 483 ARG G 484 0 11.76 CISPEP 9 GLY G 508 SER G 509 0 -0.25 CISPEP 10 GLY G 546 PRO G 547 0 -0.22 SITE 1 AC1 5 GLY A 416 SER A 417 ASP A 427 ASP A 429 SITE 2 AC1 5 DCP A 603 SITE 1 AC2 4 ASP A 427 ASP A 429 ASP A 490 DCP A 603 SITE 1 AC3 14 ARG A 386 GLY A 416 SER A 417 ARG A 420 SITE 2 AC3 14 GLY A 426 ASP A 427 ASP A 429 TYR A 505 SITE 3 AC3 14 PHE A 506 THR A 507 GLY A 508 ASN A 513 SITE 4 AC3 14 MG A 601 MN A 602 SITE 1 AC4 3 SER A 339 ILE A 341 ALA A 344 SITE 1 AC5 5 GLY C 416 SER C 417 ASP C 427 ASP C 429 SITE 2 AC5 5 DCP C 603 SITE 1 AC6 4 ASP C 427 ASP C 429 ASP C 490 DCP C 603 SITE 1 AC7 13 ARG C 386 GLY C 416 SER C 417 ARG C 420 SITE 2 AC7 13 GLY C 426 ASP C 427 ASP C 429 TYR C 505 SITE 3 AC7 13 PHE C 506 GLY C 508 ASN C 513 MG C 601 SITE 4 AC7 13 MN C 602 SITE 1 AC8 2 SER C 339 HOH C 701 SITE 1 AC9 5 GLY E 416 SER E 417 ASP E 427 ASP E 429 SITE 2 AC9 5 DCP E 603 SITE 1 AD1 4 ASP E 427 ASP E 429 ASP E 490 DCP E 603 SITE 1 AD2 11 ARG E 386 SER E 417 ARG E 420 GLY E 426 SITE 2 AD2 11 ASP E 427 ASP E 429 TYR E 505 PHE E 506 SITE 3 AD2 11 GLY E 508 MG E 601 MN E 602 SITE 1 AD3 2 SER E 339 ILE E 341 SITE 1 AD4 5 GLY G 416 SER G 417 ASP G 427 ASP G 429 SITE 2 AD4 5 DCP G 603 SITE 1 AD5 4 ASP G 427 ASP G 429 ASP G 490 DCP G 603 SITE 1 AD6 13 ARG G 386 SER G 417 ARG G 420 GLY G 426 SITE 2 AD6 13 ASP G 427 ASP G 429 TYR G 505 PHE G 506 SITE 3 AD6 13 THR G 507 GLY G 508 ASN G 513 MG G 601 SITE 4 AD6 13 MN G 602 SITE 1 AD7 3 SER G 339 ILE G 341 ALA G 344 CRYST1 206.015 206.015 114.266 90.00 90.00 90.00 P 43 21 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004854 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004854 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008752 0.00000