PDB Short entry for 5DMC HEADER TRANSCRIPTION 08-SEP-15 5DMC TITLE CRYSTAL STRUCTURE OF THE ER-ALPHA LIGAND-BINDING DOMAIN IN COMPLEX TITLE 2 WITH A NITRILE-SUBSTITUTED TRIARYL-ETHYLENE DERIVATIVE 3,3-BIS(4- TITLE 3 HYDROXYPHENYL)-2-PHENYLPROP-2-ENENITRILE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ESTROGEN RECEPTOR; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: LIGAND-BINDING DOMAIN; COMPND 5 SYNONYM: ER,ER-ALPHA,ESTRADIOL RECEPTOR,NUCLEAR RECEPTOR SUBFAMILY 3 COMPND 6 GROUP A MEMBER 1; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: NUCLEAR RECEPTOR COACTIVATOR 2; COMPND 11 CHAIN: C, D; COMPND 12 FRAGMENT: NUCLEAR RECEPTOR-INTERACTING PEPTIDE; COMPND 13 SYNONYM: NCOA-2,CLASS E BASIC HELIX-LOOP-HELIX PROTEIN 75,BHLHE75, COMPND 14 TRANSCRIPTIONAL INTERMEDIARY FACTOR 2,HTIF2; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ESR1, ESR, NR3A1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 OTHER_DETAILS: THIS SEQUENCE OCCURS NATURALLY IN HUMANS KEYWDS NUCLEAR RECEPTOR, TRANSCRIPTION FACTOR, LIGAND BINDING, PROTEIN- KEYWDS 2 LIGAND COMPLEX, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR J.C.NWACHUKWU,S.SRINIVASAN,Y.ZHENG,S.WANG,J.MIN,C.DONG,Z.LIAO, AUTHOR 2 V.CAVETT,J.NOWAK,R.HOUTMAN,K.E.CARLSON,J.S.JOSAN,O.ELEMENTO, AUTHOR 3 J.A.KATZENELLENBOGEN,H.B.ZHOU,K.W.NETTLES REVDAT 2 27-SEP-23 5DMC 1 REMARK REVDAT 1 04-MAY-16 5DMC 0 JRNL AUTH J.C.NWACHUKWU,S.SRINIVASAN,Y.ZHENG,S.WANG,J.MIN,C.DONG, JRNL AUTH 2 Z.LIAO,J.NOWAK,N.J.WRIGHT,R.HOUTMAN,K.E.CARLSON,J.S.JOSAN, JRNL AUTH 3 O.ELEMENTO,J.A.KATZENELLENBOGEN,H.B.ZHOU,K.W.NETTLES JRNL TITL PREDICTIVE FEATURES OF LIGAND-SPECIFIC SIGNALING THROUGH THE JRNL TITL 2 ESTROGEN RECEPTOR. JRNL REF MOL.SYST.BIOL. V. 12 864 2016 JRNL REFN ESSN 1744-4292 JRNL PMID 27107013 JRNL DOI 10.15252/MSB.20156701 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.60 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 83.5 REMARK 3 NUMBER OF REFLECTIONS : 16138 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.950 REMARK 3 FREE R VALUE TEST SET COUNT : 1605 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.6060 - 5.3425 0.97 1572 176 0.1905 0.2155 REMARK 3 2 5.3425 - 4.2415 0.99 1574 178 0.1774 0.2094 REMARK 3 3 4.2415 - 3.7056 0.94 1491 164 0.1889 0.2148 REMARK 3 4 3.7056 - 3.3669 0.97 1530 178 0.2272 0.2227 REMARK 3 5 3.3669 - 3.1257 0.98 1550 167 0.2466 0.3069 REMARK 3 6 3.1257 - 2.9414 0.95 1490 167 0.2529 0.3072 REMARK 3 7 2.9414 - 2.7941 0.90 1422 154 0.2654 0.2950 REMARK 3 8 2.7941 - 2.6725 0.83 1310 154 0.2913 0.2771 REMARK 3 9 2.6725 - 2.5696 0.77 1216 131 0.2790 0.3488 REMARK 3 10 2.5696 - 2.4810 0.58 911 95 0.2864 0.2822 REMARK 3 11 2.4810 - 2.4034 0.29 467 41 0.2705 0.3354 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.900 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 3792 REMARK 3 ANGLE : 0.603 5128 REMARK 3 CHIRALITY : 0.021 614 REMARK 3 PLANARITY : 0.002 631 REMARK 3 DIHEDRAL : 14.248 1401 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 305 THROUGH 322 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.3851 -5.2577 5.0847 REMARK 3 T TENSOR REMARK 3 T11: 0.6373 T22: 0.7178 REMARK 3 T33: 0.5042 T12: -0.7588 REMARK 3 T13: -0.0634 T23: -0.3117 REMARK 3 L TENSOR REMARK 3 L11: 6.0498 L22: 2.7155 REMARK 3 L33: 3.2523 L12: 3.4439 REMARK 3 L13: -1.0096 L23: -2.0183 REMARK 3 S TENSOR REMARK 3 S11: 0.9433 S12: -0.4773 S13: 1.4032 REMARK 3 S21: 0.4857 S22: 0.3102 S23: -0.1485 REMARK 3 S31: -1.7707 S32: 0.4424 S33: 0.4484 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 323 THROUGH 341 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.1849 -28.3692 4.5172 REMARK 3 T TENSOR REMARK 3 T11: 0.6273 T22: 0.5491 REMARK 3 T33: 0.5368 T12: -0.1859 REMARK 3 T13: 0.1725 T23: -0.0614 REMARK 3 L TENSOR REMARK 3 L11: 6.0807 L22: 5.6925 REMARK 3 L33: 4.5847 L12: -0.7524 REMARK 3 L13: -1.5586 L23: -2.9200 REMARK 3 S TENSOR REMARK 3 S11: -0.2903 S12: -0.2751 S13: -1.0782 REMARK 3 S21: -0.3285 S22: -0.1387 S23: 1.0352 REMARK 3 S31: 0.7989 S32: -0.8367 S33: -0.0255 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 342 THROUGH 410 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.4843 -18.5041 -1.0309 REMARK 3 T TENSOR REMARK 3 T11: 0.2865 T22: 0.2681 REMARK 3 T33: 0.1759 T12: -0.0756 REMARK 3 T13: 0.0613 T23: -0.0611 REMARK 3 L TENSOR REMARK 3 L11: 5.3125 L22: 3.6924 REMARK 3 L33: 7.1028 L12: -0.5097 REMARK 3 L13: -2.2033 L23: -2.1162 REMARK 3 S TENSOR REMARK 3 S11: -0.1044 S12: 0.0613 S13: 0.0422 REMARK 3 S21: 0.2822 S22: -0.0031 S23: 0.1210 REMARK 3 S31: 0.0990 S32: -0.3428 S33: 0.0940 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 411 THROUGH 472 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.5540 -24.6672 -6.0075 REMARK 3 T TENSOR REMARK 3 T11: 0.6100 T22: 0.3681 REMARK 3 T33: 0.2206 T12: -0.0515 REMARK 3 T13: 0.1651 T23: -0.0432 REMARK 3 L TENSOR REMARK 3 L11: 5.2955 L22: 6.4423 REMARK 3 L33: 4.1569 L12: 0.7331 REMARK 3 L13: -1.2858 L23: -0.5180 REMARK 3 S TENSOR REMARK 3 S11: -0.1346 S12: 0.1099 S13: -0.5102 REMARK 3 S21: 0.0065 S22: -0.3286 S23: 0.2506 REMARK 3 S31: 1.2627 S32: 0.0827 S33: 0.3071 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 473 THROUGH 529 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.4622 -16.0140 -8.3498 REMARK 3 T TENSOR REMARK 3 T11: 0.3261 T22: 0.3899 REMARK 3 T33: 0.1221 T12: -0.0512 REMARK 3 T13: 0.0431 T23: 0.0197 REMARK 3 L TENSOR REMARK 3 L11: 4.7583 L22: 3.8926 REMARK 3 L33: 5.7941 L12: -0.3568 REMARK 3 L13: -0.6551 L23: -0.5019 REMARK 3 S TENSOR REMARK 3 S11: 0.2350 S12: -0.3654 S13: 0.1166 REMARK 3 S21: 0.1728 S22: -0.3830 S23: -0.2324 REMARK 3 S31: 0.0738 S32: 0.5062 S33: 0.1086 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 530 THROUGH 547 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.3077 -18.3985 -9.0851 REMARK 3 T TENSOR REMARK 3 T11: 0.6723 T22: 0.8452 REMARK 3 T33: 0.6214 T12: -0.1928 REMARK 3 T13: 0.0230 T23: -0.0461 REMARK 3 L TENSOR REMARK 3 L11: 3.5579 L22: 7.4446 REMARK 3 L33: 2.8326 L12: -3.9387 REMARK 3 L13: -2.7655 L23: 1.7262 REMARK 3 S TENSOR REMARK 3 S11: -0.6809 S12: 1.3729 S13: -0.0553 REMARK 3 S21: -0.9916 S22: 0.5247 S23: 1.0732 REMARK 3 S31: 1.1742 S32: -1.6887 S33: -0.2323 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 305 THROUGH 394 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.3479 -21.9981 -32.7695 REMARK 3 T TENSOR REMARK 3 T11: 0.3668 T22: 0.2972 REMARK 3 T33: 0.1988 T12: 0.0305 REMARK 3 T13: 0.1041 T23: 0.0068 REMARK 3 L TENSOR REMARK 3 L11: 4.3939 L22: 6.1773 REMARK 3 L33: 7.1274 L12: 2.3877 REMARK 3 L13: -2.2552 L23: 0.1624 REMARK 3 S TENSOR REMARK 3 S11: -0.2719 S12: 0.2039 S13: -0.3977 REMARK 3 S21: -0.2946 S22: -0.0634 S23: -0.2014 REMARK 3 S31: 0.8649 S32: 0.2817 S33: 0.1933 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 395 THROUGH 420 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.0031 -6.4344 -35.7942 REMARK 3 T TENSOR REMARK 3 T11: 0.6558 T22: 0.6899 REMARK 3 T33: 0.4341 T12: 0.1753 REMARK 3 T13: -0.0474 T23: 0.1244 REMARK 3 L TENSOR REMARK 3 L11: 2.7830 L22: 7.7648 REMARK 3 L33: 2.6212 L12: 0.8799 REMARK 3 L13: -1.9540 L23: 1.3196 REMARK 3 S TENSOR REMARK 3 S11: 0.2957 S12: 0.6327 S13: 0.5182 REMARK 3 S21: -0.0808 S22: 0.2646 S23: 1.1770 REMARK 3 S31: -1.5257 S32: -1.4007 S33: -0.4948 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 421 THROUGH 455 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.4030 -11.3005 -24.4807 REMARK 3 T TENSOR REMARK 3 T11: 0.2510 T22: 0.3171 REMARK 3 T33: 0.1319 T12: 0.0027 REMARK 3 T13: 0.0132 T23: 0.0362 REMARK 3 L TENSOR REMARK 3 L11: 3.7413 L22: 6.2604 REMARK 3 L33: 8.1441 L12: 0.5179 REMARK 3 L13: -0.5995 L23: -0.3726 REMARK 3 S TENSOR REMARK 3 S11: 0.0193 S12: 0.0805 S13: 0.3042 REMARK 3 S21: 0.1783 S22: -0.0706 S23: 0.0967 REMARK 3 S31: -0.6931 S32: 0.1071 S33: 0.0699 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 456 THROUGH 471 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.8545 -34.0404 -15.5626 REMARK 3 T TENSOR REMARK 3 T11: 1.3959 T22: 0.6340 REMARK 3 T33: 0.6856 T12: 0.0678 REMARK 3 T13: 0.4090 T23: 0.0050 REMARK 3 L TENSOR REMARK 3 L11: 2.2058 L22: 5.2266 REMARK 3 L33: 5.9870 L12: 1.4779 REMARK 3 L13: -1.7987 L23: 3.1097 REMARK 3 S TENSOR REMARK 3 S11: -0.6679 S12: -0.2691 S13: -0.6339 REMARK 3 S21: 2.9526 S22: 0.5537 S23: 0.8316 REMARK 3 S31: 1.6522 S32: 0.7810 S33: 0.1433 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 472 THROUGH 496 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.1167 -18.3313 -16.6236 REMARK 3 T TENSOR REMARK 3 T11: 0.0573 T22: 1.0728 REMARK 3 T33: 0.4117 T12: 0.0241 REMARK 3 T13: 0.0295 T23: 0.2137 REMARK 3 L TENSOR REMARK 3 L11: 4.0912 L22: 8.1515 REMARK 3 L33: 7.1034 L12: 2.0089 REMARK 3 L13: -1.1972 L23: 3.6947 REMARK 3 S TENSOR REMARK 3 S11: 0.0619 S12: -0.3233 S13: -0.2137 REMARK 3 S21: 0.7268 S22: -0.4701 S23: -0.9404 REMARK 3 S31: 0.9964 S32: 2.2971 S33: 0.2378 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 497 THROUGH 547 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.8441 -19.7819 -23.7937 REMARK 3 T TENSOR REMARK 3 T11: 0.3551 T22: 0.4091 REMARK 3 T33: 0.3525 T12: -0.0479 REMARK 3 T13: 0.1024 T23: -0.0339 REMARK 3 L TENSOR REMARK 3 L11: 3.1813 L22: 4.6295 REMARK 3 L33: 8.3796 L12: -0.1311 REMARK 3 L13: -0.6516 L23: 0.3963 REMARK 3 S TENSOR REMARK 3 S11: -0.0708 S12: 0.2545 S13: -0.5366 REMARK 3 S21: -0.1958 S22: -0.2757 S23: 0.5777 REMARK 3 S31: 0.7804 S32: -1.0353 S33: 0.2142 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 687 THROUGH 696 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.8251 -5.6751 -1.4248 REMARK 3 T TENSOR REMARK 3 T11: 0.4214 T22: 0.6102 REMARK 3 T33: 0.8566 T12: 0.1326 REMARK 3 T13: 0.0893 T23: 0.1284 REMARK 3 L TENSOR REMARK 3 L11: 3.1768 L22: 3.6165 REMARK 3 L33: 1.6342 L12: 0.5134 REMARK 3 L13: -1.7230 L23: 1.2017 REMARK 3 S TENSOR REMARK 3 S11: -0.1153 S12: -0.2655 S13: 0.5455 REMARK 3 S21: -0.1176 S22: -0.6461 S23: 0.3322 REMARK 3 S31: -0.5632 S32: -1.0223 S33: 0.4763 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 688 THROUGH 696 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.1850 -36.6324 -36.1643 REMARK 3 T TENSOR REMARK 3 T11: 1.0146 T22: 0.6621 REMARK 3 T33: 0.5727 T12: 0.1396 REMARK 3 T13: 0.1948 T23: -0.1135 REMARK 3 L TENSOR REMARK 3 L11: 0.1506 L22: 2.2173 REMARK 3 L33: 0.7762 L12: -0.4193 REMARK 3 L13: 0.1327 L23: 0.0728 REMARK 3 S TENSOR REMARK 3 S11: 0.2617 S12: 0.7661 S13: -0.5646 REMARK 3 S21: 0.0494 S22: 0.4193 S23: 0.2866 REMARK 3 S31: -0.0998 S32: 0.6499 S33: -0.2311 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5DMC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-SEP-15. REMARK 100 THE DEPOSITION ID IS D_1000213432. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : SIDE SCATTERING BENT CUBE I-BEAM REMARK 200 SINGLE CRYSTAL ASYMMETRIC CUT REMARK 200 4.965 DEGS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18855 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.6 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : 0.82900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB 2QA8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG 3350, 0.05M MGCL2, 0.067M REMARK 280 NACL, 0.1M TRIS, PH 8.3, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 41.32500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 298 REMARK 465 LYS A 299 REMARK 465 ARG A 300 REMARK 465 SER A 301 REMARK 465 LYS A 302 REMARK 465 LYS A 303 REMARK 465 ASN A 304 REMARK 465 ASP A 332 REMARK 465 PRO A 333 REMARK 465 THR A 334 REMARK 465 ARG A 335 REMARK 465 PRO A 336 REMARK 465 GLU A 419 REMARK 465 GLY A 420 REMARK 465 PHE A 461 REMARK 465 LEU A 462 REMARK 465 SER A 463 REMARK 465 SER A 464 REMARK 465 THR A 465 REMARK 465 LEU A 466 REMARK 465 LYS A 467 REMARK 465 SER A 468 REMARK 465 LEU A 469 REMARK 465 GLU A 470 REMARK 465 GLU A 471 REMARK 465 VAL A 533 REMARK 465 VAL A 534 REMARK 465 ARG A 548 REMARK 465 LEU A 549 REMARK 465 HIS A 550 REMARK 465 ALA A 551 REMARK 465 PRO A 552 REMARK 465 THR A 553 REMARK 465 SER A 554 REMARK 465 ILE B 298 REMARK 465 LYS B 299 REMARK 465 ARG B 300 REMARK 465 SER B 301 REMARK 465 LYS B 302 REMARK 465 LYS B 303 REMARK 465 ASN B 304 REMARK 465 PHE B 337 REMARK 465 CYS B 417 REMARK 465 VAL B 418 REMARK 465 GLU B 419 REMARK 465 LEU B 462 REMARK 465 SER B 463 REMARK 465 SER B 464 REMARK 465 THR B 465 REMARK 465 LEU B 466 REMARK 465 LYS B 467 REMARK 465 ASN B 532 REMARK 465 VAL B 533 REMARK 465 ARG B 548 REMARK 465 LEU B 549 REMARK 465 HIS B 550 REMARK 465 ALA B 551 REMARK 465 PRO B 552 REMARK 465 THR B 553 REMARK 465 SER B 554 REMARK 465 LYS C 686 REMARK 465 SER C 697 REMARK 465 SER C 698 REMARK 465 SER C 699 REMARK 465 LYS D 686 REMARK 465 HIS D 687 REMARK 465 SER D 697 REMARK 465 SER D 698 REMARK 465 SER D 699 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 306 CG CD1 CD2 REMARK 470 LYS A 401 CG CD CE NZ REMARK 470 GLU A 423 CG CD OE1 OE2 REMARK 470 LYS A 472 CG CD CE NZ REMARK 470 TYR A 526 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 529 CG CD CE NZ REMARK 470 LYS A 531 CG CD CE NZ REMARK 470 LEU B 306 CG CD1 CD2 REMARK 470 GLU B 330 CG CD OE1 OE2 REMARK 470 ASP B 332 CG OD1 OD2 REMARK 470 ARG B 335 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 339 CG CD OE1 OE2 REMARK 470 HIS B 373 CG ND1 CD2 CE1 NE2 REMARK 470 ARG B 412 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 414 CG CD OE1 NE2 REMARK 470 LYS B 416 CG CD CE NZ REMARK 470 GLU B 423 CG CD OE1 OE2 REMARK 470 PHE B 425 CG CD1 CD2 CE1 CE2 CZ REMARK 470 PHE B 461 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU B 470 CG CD OE1 OE2 REMARK 470 ARG B 477 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 481 CG CD CE NZ REMARK 470 LYS B 531 CG CD CE NZ REMARK 470 LEU B 536 CG CD1 CD2 REMARK 470 HIS B 547 CG ND1 CD2 CE1 NE2 REMARK 470 HIS C 687 CG ND1 CD2 CE1 NE2 REMARK 470 ASP C 696 CG OD1 OD2 REMARK 470 LYS D 688 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLN B 506 O HOH B 701 1.86 REMARK 500 O HOH B 723 O HOH B 739 2.03 REMARK 500 O HOH B 717 O HOH B 746 2.05 REMARK 500 OD1 ASP A 545 O HOH A 701 2.11 REMARK 500 OD2 ASP B 374 O HOH B 702 2.11 REMARK 500 O HOH B 707 O HOH B 742 2.11 REMARK 500 O HOH A 703 O HOH A 744 2.13 REMARK 500 OE2 GLU B 471 O HOH B 703 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 330 41.35 -72.94 REMARK 500 ALA A 340 -30.17 73.29 REMARK 500 CYS A 530 34.66 -91.77 REMARK 500 ASP A 545 48.13 -74.04 REMARK 500 ALA A 546 23.79 -168.95 REMARK 500 LEU B 306 -45.70 66.11 REMARK 500 PRO B 333 -155.17 -67.16 REMARK 500 ARG B 335 104.87 -173.37 REMARK 500 ALA B 340 -49.80 63.39 REMARK 500 GLU B 470 106.93 -28.51 REMARK 500 GLU B 471 -53.43 70.72 REMARK 500 ALA B 546 35.37 -169.64 REMARK 500 LEU D 693 -37.88 76.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 5DH A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 5DH B 601 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5DL4 RELATED DB: PDB REMARK 900 RELATED ID: 5DKS RELATED DB: PDB REMARK 900 RELATED ID: 5DKG RELATED DB: PDB REMARK 900 RELATED ID: 5DKE RELATED DB: PDB REMARK 900 RELATED ID: 5DKB RELATED DB: PDB REMARK 900 RELATED ID: 5DK9 RELATED DB: PDB REMARK 900 RELATED ID: 5DIG RELATED DB: PDB REMARK 900 RELATED ID: 5DIE RELATED DB: PDB REMARK 900 RELATED ID: 5DID RELATED DB: PDB REMARK 900 RELATED ID: 5DI7 RELATED DB: PDB REMARK 900 RELATED ID: 5DLR RELATED DB: PDB REMARK 900 RELATED ID: 5DMF RELATED DB: PDB DBREF 5DMC A 298 554 UNP P03372 ESR1_HUMAN 298 554 DBREF 5DMC B 298 554 UNP P03372 ESR1_HUMAN 298 554 DBREF 5DMC C 686 699 UNP Q15596 NCOA2_HUMAN 686 699 DBREF 5DMC D 686 699 UNP Q15596 NCOA2_HUMAN 686 699 SEQADV 5DMC SER A 537 UNP P03372 TYR 537 ENGINEERED MUTATION SEQADV 5DMC SER B 537 UNP P03372 TYR 537 ENGINEERED MUTATION SEQRES 1 A 257 ILE LYS ARG SER LYS LYS ASN SER LEU ALA LEU SER LEU SEQRES 2 A 257 THR ALA ASP GLN MET VAL SER ALA LEU LEU ASP ALA GLU SEQRES 3 A 257 PRO PRO ILE LEU TYR SER GLU TYR ASP PRO THR ARG PRO SEQRES 4 A 257 PHE SER GLU ALA SER MET MET GLY LEU LEU THR ASN LEU SEQRES 5 A 257 ALA ASP ARG GLU LEU VAL HIS MET ILE ASN TRP ALA LYS SEQRES 6 A 257 ARG VAL PRO GLY PHE VAL ASP LEU THR LEU HIS ASP GLN SEQRES 7 A 257 VAL HIS LEU LEU GLU CYS ALA TRP LEU GLU ILE LEU MET SEQRES 8 A 257 ILE GLY LEU VAL TRP ARG SER MET GLU HIS PRO GLY LYS SEQRES 9 A 257 LEU LEU PHE ALA PRO ASN LEU LEU LEU ASP ARG ASN GLN SEQRES 10 A 257 GLY LYS CYS VAL GLU GLY MET VAL GLU ILE PHE ASP MET SEQRES 11 A 257 LEU LEU ALA THR SER SER ARG PHE ARG MET MET ASN LEU SEQRES 12 A 257 GLN GLY GLU GLU PHE VAL CYS LEU LYS SER ILE ILE LEU SEQRES 13 A 257 LEU ASN SER GLY VAL TYR THR PHE LEU SER SER THR LEU SEQRES 14 A 257 LYS SER LEU GLU GLU LYS ASP HIS ILE HIS ARG VAL LEU SEQRES 15 A 257 ASP LYS ILE THR ASP THR LEU ILE HIS LEU MET ALA LYS SEQRES 16 A 257 ALA GLY LEU THR LEU GLN GLN GLN HIS GLN ARG LEU ALA SEQRES 17 A 257 GLN LEU LEU LEU ILE LEU SER HIS ILE ARG HIS MET SER SEQRES 18 A 257 ASN LYS GLY MET GLU HIS LEU TYR SER MET LYS CYS LYS SEQRES 19 A 257 ASN VAL VAL PRO LEU SER ASP LEU LEU LEU GLU MET LEU SEQRES 20 A 257 ASP ALA HIS ARG LEU HIS ALA PRO THR SER SEQRES 1 B 257 ILE LYS ARG SER LYS LYS ASN SER LEU ALA LEU SER LEU SEQRES 2 B 257 THR ALA ASP GLN MET VAL SER ALA LEU LEU ASP ALA GLU SEQRES 3 B 257 PRO PRO ILE LEU TYR SER GLU TYR ASP PRO THR ARG PRO SEQRES 4 B 257 PHE SER GLU ALA SER MET MET GLY LEU LEU THR ASN LEU SEQRES 5 B 257 ALA ASP ARG GLU LEU VAL HIS MET ILE ASN TRP ALA LYS SEQRES 6 B 257 ARG VAL PRO GLY PHE VAL ASP LEU THR LEU HIS ASP GLN SEQRES 7 B 257 VAL HIS LEU LEU GLU CYS ALA TRP LEU GLU ILE LEU MET SEQRES 8 B 257 ILE GLY LEU VAL TRP ARG SER MET GLU HIS PRO GLY LYS SEQRES 9 B 257 LEU LEU PHE ALA PRO ASN LEU LEU LEU ASP ARG ASN GLN SEQRES 10 B 257 GLY LYS CYS VAL GLU GLY MET VAL GLU ILE PHE ASP MET SEQRES 11 B 257 LEU LEU ALA THR SER SER ARG PHE ARG MET MET ASN LEU SEQRES 12 B 257 GLN GLY GLU GLU PHE VAL CYS LEU LYS SER ILE ILE LEU SEQRES 13 B 257 LEU ASN SER GLY VAL TYR THR PHE LEU SER SER THR LEU SEQRES 14 B 257 LYS SER LEU GLU GLU LYS ASP HIS ILE HIS ARG VAL LEU SEQRES 15 B 257 ASP LYS ILE THR ASP THR LEU ILE HIS LEU MET ALA LYS SEQRES 16 B 257 ALA GLY LEU THR LEU GLN GLN GLN HIS GLN ARG LEU ALA SEQRES 17 B 257 GLN LEU LEU LEU ILE LEU SER HIS ILE ARG HIS MET SER SEQRES 18 B 257 ASN LYS GLY MET GLU HIS LEU TYR SER MET LYS CYS LYS SEQRES 19 B 257 ASN VAL VAL PRO LEU SER ASP LEU LEU LEU GLU MET LEU SEQRES 20 B 257 ASP ALA HIS ARG LEU HIS ALA PRO THR SER SEQRES 1 C 14 LYS HIS LYS ILE LEU HIS ARG LEU LEU GLN ASP SER SER SEQRES 2 C 14 SER SEQRES 1 D 14 LYS HIS LYS ILE LEU HIS ARG LEU LEU GLN ASP SER SER SEQRES 2 D 14 SER HET 5DH A 601 24 HET 5DH B 601 24 HETNAM 5DH 3,3-BIS(4-HYDROXYPHENYL)-2-PHENYLPROP-2-ENENITRILE FORMUL 5 5DH 2(C21 H15 N O2) FORMUL 7 HOH *104(H2 O) HELIX 1 AA1 SER A 305 LEU A 310 5 6 HELIX 2 AA2 THR A 311 ALA A 322 1 12 HELIX 3 AA3 ALA A 340 LYS A 362 1 23 HELIX 4 AA4 GLY A 366 LEU A 370 5 5 HELIX 5 AA5 THR A 371 SER A 395 1 25 HELIX 6 AA6 ASN A 413 CYS A 417 5 5 HELIX 7 AA7 VAL A 422 ASN A 439 1 18 HELIX 8 AA8 GLN A 441 SER A 456 1 16 HELIX 9 AA9 ASP A 473 ALA A 493 1 21 HELIX 10 AB1 THR A 496 CYS A 530 1 35 HELIX 11 AB2 SER A 537 ASP A 545 1 9 HELIX 12 AB3 LEU B 306 LEU B 310 5 5 HELIX 13 AB4 THR B 311 ALA B 322 1 12 HELIX 14 AB5 ALA B 340 VAL B 364 1 25 HELIX 15 AB6 GLY B 366 LEU B 370 5 5 HELIX 16 AB7 THR B 371 SER B 395 1 25 HELIX 17 AB8 MET B 421 ASN B 439 1 19 HELIX 18 AB9 GLN B 441 SER B 456 1 16 HELIX 19 AC1 GLU B 471 ALA B 493 1 23 HELIX 20 AC2 THR B 496 CYS B 530 1 35 HELIX 21 AC3 SER B 537 ASP B 545 1 9 HELIX 22 AC4 LYS C 688 ASP C 696 1 9 HELIX 23 AC5 LEU D 690 GLN D 695 1 6 SHEET 1 AA1 2 LEU A 402 ALA A 405 0 SHEET 2 AA1 2 LEU A 408 LEU A 410 -1 O LEU A 410 N LEU A 402 SHEET 1 AA2 2 LEU B 402 ALA B 405 0 SHEET 2 AA2 2 LEU B 408 LEU B 410 -1 O LEU B 410 N LEU B 402 CISPEP 1 GLU B 470 GLU B 471 0 3.42 SITE 1 AC1 12 LEU A 346 THR A 347 ALA A 350 GLU A 353 SITE 2 AC1 12 LEU A 387 LEU A 391 ARG A 394 PHE A 404 SITE 3 AC1 12 MET A 421 LEU A 428 GLY A 521 LEU A 525 SITE 1 AC2 13 LEU B 346 THR B 347 GLU B 353 LEU B 387 SITE 2 AC2 13 LEU B 391 ARG B 394 PHE B 404 MET B 421 SITE 3 AC2 13 LEU B 428 GLY B 521 HIS B 524 LEU B 525 SITE 4 AC2 13 HOH B 720 CRYST1 55.510 82.650 58.580 90.00 111.05 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018015 0.000000 0.006933 0.00000 SCALE2 0.000000 0.012099 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018291 0.00000