PDB Short entry for 5DY8 HEADER TRANSCRIPTION 24-SEP-15 5DY8 TITLE CRYSTAL STRUCTURE OF THE ER-ALPHA LIGAND-BINDING DOMAIN IN COMPLEX TITLE 2 WITH THE CYCLOFENIL DERIVATIVE 4,4'-{[(3S)-3- TITLE 3 ETHYLCYCLOHEXYLIDENE]METHANEDIYL}DIPHENOL COMPND MOL_ID: 1; COMPND 2 MOLECULE: ESTROGEN RECEPTOR; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: LIGAND-BINDING DOMAIN; COMPND 5 SYNONYM: ER,ER-ALPHA,ESTRADIOL RECEPTOR,NUCLEAR RECEPTOR SUBFAMILY 3 COMPND 6 GROUP A MEMBER 1; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: NUCLEAR RECEPTOR COACTIVATOR 2; COMPND 11 CHAIN: C, D; COMPND 12 FRAGMENT: NUCLEAR RECEPTOR-INTERACTING PEPTIDE; COMPND 13 SYNONYM: NCOA-2,CLASS E BASIC HELIX-LOOP-HELIX PROTEIN 75,BHLHE75, COMPND 14 TRANSCRIPTIONAL INTERMEDIARY FACTOR 2,HTIF2; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ESR1, ESR, NR3A1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606 KEYWDS NUCLEAR RECEPTOR, TRANSCRIPTION FACTOR, LIGAND BINDING, PROTEIN- KEYWDS 2 LIGAND COMPLEX, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR J.C.NWACHUKWU,S.SRINIVASAN,Y.ZHENG,S.WANG,J.MIN,C.DONG,Z.LIAO, AUTHOR 2 V.CAVETT,J.NOWAK,R.HOUTMAN,K.E.CARLSON,J.S.JOSAN,O.ELEMENTO, AUTHOR 3 J.A.KATZENELLENBOGEN,H.B.ZHOU,K.W.NETTLES REVDAT 2 27-SEP-23 5DY8 1 REMARK REVDAT 1 04-MAY-16 5DY8 0 JRNL AUTH J.C.NWACHUKWU,S.SRINIVASAN,Y.ZHENG,S.WANG,J.MIN,C.DONG, JRNL AUTH 2 Z.LIAO,J.NOWAK,N.J.WRIGHT,R.HOUTMAN,K.E.CARLSON,J.S.JOSAN, JRNL AUTH 3 O.ELEMENTO,J.A.KATZENELLENBOGEN,H.B.ZHOU,K.W.NETTLES JRNL TITL PREDICTIVE FEATURES OF LIGAND-SPECIFIC SIGNALING THROUGH THE JRNL TITL 2 ESTROGEN RECEPTOR. JRNL REF MOL.SYST.BIOL. V. 12 864 2016 JRNL REFN ESSN 1744-4292 JRNL PMID 27107013 JRNL DOI 10.15252/MSB.20156701 REMARK 2 REMARK 2 RESOLUTION. 2.03 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.03 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.09 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.3 REMARK 3 NUMBER OF REFLECTIONS : 28636 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.690 REMARK 3 FREE R VALUE TEST SET COUNT : 1916 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.1030 - 4.8943 0.98 2036 152 0.1827 0.2248 REMARK 3 2 4.8943 - 3.8854 0.97 2004 146 0.1617 0.1994 REMARK 3 3 3.8854 - 3.3944 0.99 2033 137 0.1714 0.2348 REMARK 3 4 3.3944 - 3.0841 0.99 2029 153 0.1954 0.2820 REMARK 3 5 3.0841 - 2.8631 0.98 1997 141 0.1895 0.2300 REMARK 3 6 2.8631 - 2.6943 0.93 1912 126 0.2020 0.2417 REMARK 3 7 2.6943 - 2.5594 0.96 1954 145 0.2047 0.2576 REMARK 3 8 2.5594 - 2.4480 0.96 1960 133 0.2056 0.2857 REMARK 3 9 2.4480 - 2.3538 0.95 1972 133 0.2054 0.2453 REMARK 3 10 2.3538 - 2.2725 0.94 1878 145 0.2101 0.2773 REMARK 3 11 2.2725 - 2.2015 0.88 1813 125 0.2392 0.3124 REMARK 3 12 2.2015 - 2.1385 0.84 1719 126 0.2171 0.3132 REMARK 3 13 2.1385 - 2.0823 0.86 1718 121 0.2284 0.2695 REMARK 3 14 2.0823 - 2.0314 0.83 1695 133 0.2392 0.2811 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.730 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 3912 REMARK 3 ANGLE : 0.624 5296 REMARK 3 CHIRALITY : 0.023 631 REMARK 3 PLANARITY : 0.002 655 REMARK 3 DIHEDRAL : 13.186 1426 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 304 THROUGH 394 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.3539 22.7196 -0.4538 REMARK 3 T TENSOR REMARK 3 T11: 0.1523 T22: 0.2081 REMARK 3 T33: 0.1576 T12: -0.0134 REMARK 3 T13: -0.0028 T23: 0.0227 REMARK 3 L TENSOR REMARK 3 L11: 3.3972 L22: 3.2435 REMARK 3 L33: 1.8192 L12: -0.5139 REMARK 3 L13: -0.4673 L23: 0.4571 REMARK 3 S TENSOR REMARK 3 S11: -0.0293 S12: 0.2573 S13: 0.1456 REMARK 3 S21: -0.0387 S22: -0.0020 S23: -0.2031 REMARK 3 S31: -0.0847 S32: 0.0316 S33: 0.0198 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 395 THROUGH 437 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.5367 5.4350 3.5445 REMARK 3 T TENSOR REMARK 3 T11: 0.4593 T22: 0.2852 REMARK 3 T33: 0.4237 T12: 0.0159 REMARK 3 T13: 0.0777 T23: -0.0230 REMARK 3 L TENSOR REMARK 3 L11: 2.8449 L22: 3.4299 REMARK 3 L33: 2.7166 L12: -0.0929 REMARK 3 L13: -2.0139 L23: 0.4197 REMARK 3 S TENSOR REMARK 3 S11: -0.4848 S12: 0.1968 S13: -0.9558 REMARK 3 S21: 0.3859 S22: 0.0833 S23: 0.0564 REMARK 3 S31: 0.4319 S32: 0.1989 S33: 0.2948 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 438 THROUGH 496 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.3620 27.3349 3.9215 REMARK 3 T TENSOR REMARK 3 T11: 0.1889 T22: 0.2107 REMARK 3 T33: 0.1542 T12: 0.0208 REMARK 3 T13: 0.0089 T23: 0.0201 REMARK 3 L TENSOR REMARK 3 L11: 5.8924 L22: 4.0648 REMARK 3 L33: 1.9677 L12: -0.3568 REMARK 3 L13: -0.5286 L23: 0.5649 REMARK 3 S TENSOR REMARK 3 S11: 0.1618 S12: 0.0677 S13: 0.3124 REMARK 3 S21: -0.0224 S22: -0.0876 S23: 0.0732 REMARK 3 S31: -0.2130 S32: -0.0686 S33: 0.0439 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 497 THROUGH 548 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.2427 17.9326 10.6204 REMARK 3 T TENSOR REMARK 3 T11: 0.3659 T22: 0.2118 REMARK 3 T33: 0.2156 T12: 0.0093 REMARK 3 T13: -0.0163 T23: 0.0227 REMARK 3 L TENSOR REMARK 3 L11: 4.0607 L22: 2.4038 REMARK 3 L33: 2.0389 L12: 0.0893 REMARK 3 L13: -0.8783 L23: 0.0635 REMARK 3 S TENSOR REMARK 3 S11: -0.0657 S12: -0.3562 S13: -0.3672 REMARK 3 S21: 0.2566 S22: -0.0419 S23: -0.3307 REMARK 3 S31: 0.1965 S32: 0.2834 S33: 0.0806 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 305 THROUGH 338 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.6563 21.3736 35.8501 REMARK 3 T TENSOR REMARK 3 T11: 0.2785 T22: 0.3564 REMARK 3 T33: 0.2754 T12: 0.0527 REMARK 3 T13: 0.0607 T23: 0.0049 REMARK 3 L TENSOR REMARK 3 L11: 3.7062 L22: 2.1264 REMARK 3 L33: 4.6743 L12: 0.8016 REMARK 3 L13: 2.6170 L23: 0.5197 REMARK 3 S TENSOR REMARK 3 S11: 0.1385 S12: -0.2234 S13: -0.0046 REMARK 3 S21: 0.1734 S22: -0.0586 S23: 0.0880 REMARK 3 S31: -0.0983 S32: -0.3132 S33: 0.0076 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 339 THROUGH 420 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.6914 19.1467 32.6770 REMARK 3 T TENSOR REMARK 3 T11: 0.2311 T22: 0.2524 REMARK 3 T33: 0.1717 T12: 0.0185 REMARK 3 T13: 0.0303 T23: -0.0054 REMARK 3 L TENSOR REMARK 3 L11: 1.8494 L22: 3.2785 REMARK 3 L33: 4.0220 L12: 0.0463 REMARK 3 L13: 0.6910 L23: 0.7262 REMARK 3 S TENSOR REMARK 3 S11: -0.0698 S12: -0.2013 S13: -0.0819 REMARK 3 S21: 0.0774 S22: 0.0351 S23: -0.0682 REMARK 3 S31: 0.0455 S32: 0.1025 S33: -0.0007 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 421 THROUGH 455 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.1143 27.6452 24.4819 REMARK 3 T TENSOR REMARK 3 T11: 0.2985 T22: 0.2543 REMARK 3 T33: 0.2074 T12: -0.0019 REMARK 3 T13: -0.0041 T23: -0.0002 REMARK 3 L TENSOR REMARK 3 L11: 3.0212 L22: 3.1666 REMARK 3 L33: 3.8319 L12: 0.7096 REMARK 3 L13: 0.3693 L23: 0.2290 REMARK 3 S TENSOR REMARK 3 S11: -0.1103 S12: 0.0160 S13: 0.2549 REMARK 3 S21: -0.0904 S22: 0.0205 S23: 0.0334 REMARK 3 S31: -0.4749 S32: -0.0716 S33: 0.0954 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 456 THROUGH 468 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.5411 5.1134 15.4421 REMARK 3 T TENSOR REMARK 3 T11: 1.0309 T22: 1.3369 REMARK 3 T33: 0.4327 T12: -0.3057 REMARK 3 T13: 0.0422 T23: 0.0819 REMARK 3 L TENSOR REMARK 3 L11: 0.1765 L22: 0.2403 REMARK 3 L33: 2.2042 L12: -0.0428 REMARK 3 L13: 0.0334 L23: 0.6977 REMARK 3 S TENSOR REMARK 3 S11: -0.3646 S12: 0.2808 S13: -0.2034 REMARK 3 S21: -0.9321 S22: -0.1159 S23: -0.0995 REMARK 3 S31: 0.7031 S32: -0.1374 S33: -0.1256 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 469 THROUGH 531 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.0096 21.1723 18.4365 REMARK 3 T TENSOR REMARK 3 T11: 0.2624 T22: 0.2857 REMARK 3 T33: 0.1987 T12: -0.0068 REMARK 3 T13: 0.0457 T23: -0.0477 REMARK 3 L TENSOR REMARK 3 L11: 2.6472 L22: 3.0527 REMARK 3 L33: 3.5222 L12: -1.2867 REMARK 3 L13: 0.9067 L23: -1.0053 REMARK 3 S TENSOR REMARK 3 S11: 0.0016 S12: -0.0335 S13: 0.0155 REMARK 3 S21: -0.1480 S22: -0.0793 S23: 0.1259 REMARK 3 S31: 0.1315 S32: -0.2841 S33: 0.0764 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 532 THROUGH 549 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.0996 9.3463 33.3815 REMARK 3 T TENSOR REMARK 3 T11: 0.5074 T22: 0.4889 REMARK 3 T33: 0.6762 T12: 0.1600 REMARK 3 T13: -0.0121 T23: 0.0235 REMARK 3 L TENSOR REMARK 3 L11: 5.3939 L22: 4.8789 REMARK 3 L33: 5.2361 L12: -0.3353 REMARK 3 L13: 0.0043 L23: -2.1644 REMARK 3 S TENSOR REMARK 3 S11: 0.3842 S12: -0.1481 S13: -0.1115 REMARK 3 S21: -0.0613 S22: 0.1155 S23: -1.3430 REMARK 3 S31: 0.5211 S32: 0.7598 S33: 0.0645 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 687 THROUGH 696 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.4723 33.5582 2.1302 REMARK 3 T TENSOR REMARK 3 T11: 0.3274 T22: 0.4499 REMARK 3 T33: 0.6016 T12: -0.0595 REMARK 3 T13: 0.0746 T23: -0.0580 REMARK 3 L TENSOR REMARK 3 L11: 0.0355 L22: 0.0430 REMARK 3 L33: 0.0006 L12: -0.0412 REMARK 3 L13: 0.0153 L23: -0.0391 REMARK 3 S TENSOR REMARK 3 S11: 0.0675 S12: -0.3053 S13: 0.5524 REMARK 3 S21: -0.0872 S22: -0.3083 S23: 0.2418 REMARK 3 S31: -0.3669 S32: 0.0510 S33: -0.0006 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 688 THROUGH 696 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.8661 1.6702 35.3841 REMARK 3 T TENSOR REMARK 3 T11: 0.5990 T22: 0.3918 REMARK 3 T33: 0.5729 T12: -0.0149 REMARK 3 T13: 0.0219 T23: 0.2030 REMARK 3 L TENSOR REMARK 3 L11: 0.2934 L22: 0.0663 REMARK 3 L33: 0.0231 L12: 0.0709 REMARK 3 L13: 0.0267 L23: -0.0220 REMARK 3 S TENSOR REMARK 3 S11: -0.1394 S12: -0.3480 S13: -1.1468 REMARK 3 S21: 0.3991 S22: 0.1240 S23: 0.1106 REMARK 3 S31: 0.5480 S32: -0.2641 S33: 0.0067 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5DY8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-OCT-15. REMARK 100 THE DEPOSITION ID IS D_1000214020. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : SIDE SCATTERING BENT CUBE I-BEAM REMARK 200 SINGLE CRYSTAL ASYMMETRIC CUT REMARK 200 4.965 DEGS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30228 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.030 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 5.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.03 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : 0.87000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 2B1V REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG 3350, 0.05M MGCL2, 0.067M REMARK 280 NACL, 0.1M TRIS, PH 8.3, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 40.63800 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 298 REMARK 465 LYS A 299 REMARK 465 ARG A 300 REMARK 465 SER A 301 REMARK 465 LYS A 302 REMARK 465 LYS A 303 REMARK 465 THR A 460 REMARK 465 PHE A 461 REMARK 465 LEU A 462 REMARK 465 SER A 463 REMARK 465 SER A 464 REMARK 465 THR A 465 REMARK 465 LEU A 466 REMARK 465 LYS A 467 REMARK 465 SER A 468 REMARK 465 LEU A 469 REMARK 465 GLU A 470 REMARK 465 GLU A 471 REMARK 465 LEU A 549 REMARK 465 HIS A 550 REMARK 465 ALA A 551 REMARK 465 PRO A 552 REMARK 465 THR A 553 REMARK 465 SER A 554 REMARK 465 ILE B 298 REMARK 465 LYS B 299 REMARK 465 ARG B 300 REMARK 465 SER B 301 REMARK 465 LYS B 302 REMARK 465 LYS B 303 REMARK 465 ASN B 304 REMARK 465 GLN B 414 REMARK 465 GLY B 415 REMARK 465 LYS B 416 REMARK 465 CYS B 417 REMARK 465 VAL B 418 REMARK 465 PHE B 461 REMARK 465 LEU B 462 REMARK 465 SER B 463 REMARK 465 SER B 464 REMARK 465 THR B 465 REMARK 465 HIS B 550 REMARK 465 ALA B 551 REMARK 465 PRO B 552 REMARK 465 THR B 553 REMARK 465 SER B 554 REMARK 465 LYS C 686 REMARK 465 SER C 697 REMARK 465 SER C 698 REMARK 465 SER C 699 REMARK 465 LYS D 686 REMARK 465 HIS D 687 REMARK 465 SER D 697 REMARK 465 SER D 698 REMARK 465 SER D 699 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 330 CG CD OE1 OE2 REMARK 470 GLU A 397 CG CD OE1 OE2 REMARK 470 LYS A 401 CG CD CE NZ REMARK 470 LYS A 416 CG CD CE NZ REMARK 470 GLU A 419 CG CD OE1 OE2 REMARK 470 GLU A 423 CG CD OE1 OE2 REMARK 470 LYS A 472 CG CD CE NZ REMARK 470 LYS A 531 CG CD CE NZ REMARK 470 ARG A 548 CG CD NE CZ NH1 NH2 REMARK 470 SER B 305 OG REMARK 470 LEU B 306 CG CD1 CD2 REMARK 470 GLU B 339 CG CD OE1 OE2 REMARK 470 ASP B 411 CG OD1 OD2 REMARK 470 GLU B 419 CG CD OE1 OE2 REMARK 470 GLU B 423 CG CD OE1 OE2 REMARK 470 LEU B 466 CG CD1 CD2 REMARK 470 LYS B 467 CG CD CE NZ REMARK 470 LEU B 469 CG CD1 CD2 REMARK 470 GLU B 470 CG CD OE1 OE2 REMARK 470 GLU B 471 CG CD OE1 OE2 REMARK 470 LYS B 472 CG CD CE NZ REMARK 470 LYS B 492 CG CD CE NZ REMARK 470 TYR B 526 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS B 531 CG CD CE NZ REMARK 470 ASN B 532 CG OD1 ND2 REMARK 470 ARG B 548 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 549 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O VAL B 534 O HOH B 1001 2.04 REMARK 500 OD2 ASP B 374 O HOH B 1002 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 331 -136.13 -72.78 REMARK 500 ASP A 332 105.54 62.75 REMARK 500 CYS A 417 -141.71 -71.25 REMARK 500 VAL A 418 104.94 22.20 REMARK 500 LYS A 531 -157.79 -75.36 REMARK 500 VAL A 533 -65.86 -129.04 REMARK 500 LYS B 467 48.51 -79.62 REMARK 500 MET B 528 -76.44 -61.28 REMARK 500 LYS B 529 -47.64 -29.38 REMARK 500 ASN B 532 -50.89 61.05 REMARK 500 VAL B 533 -57.97 9.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 5K4 A 900 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 5K4 B 901 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5DXR RELATED DB: PDB REMARK 900 5DXR CONTAINS THE SAME PROTEIN COMPLEXED WITH A DIFFERENT REMARK 900 CYCLOFENIL DERIVATIVE DBREF 5DY8 A 298 554 UNP P03372 ESR1_HUMAN 298 554 DBREF 5DY8 B 298 554 UNP P03372 ESR1_HUMAN 298 554 DBREF 5DY8 C 686 699 UNP Q15596 NCOA2_HUMAN 686 699 DBREF 5DY8 D 686 699 UNP Q15596 NCOA2_HUMAN 686 699 SEQADV 5DY8 SER A 537 UNP P03372 TYR 537 ENGINEERED MUTATION SEQADV 5DY8 SER B 537 UNP P03372 TYR 537 ENGINEERED MUTATION SEQRES 1 A 257 ILE LYS ARG SER LYS LYS ASN SER LEU ALA LEU SER LEU SEQRES 2 A 257 THR ALA ASP GLN MET VAL SER ALA LEU LEU ASP ALA GLU SEQRES 3 A 257 PRO PRO ILE LEU TYR SER GLU TYR ASP PRO THR ARG PRO SEQRES 4 A 257 PHE SER GLU ALA SER MET MET GLY LEU LEU THR ASN LEU SEQRES 5 A 257 ALA ASP ARG GLU LEU VAL HIS MET ILE ASN TRP ALA LYS SEQRES 6 A 257 ARG VAL PRO GLY PHE VAL ASP LEU THR LEU HIS ASP GLN SEQRES 7 A 257 VAL HIS LEU LEU GLU CYS ALA TRP LEU GLU ILE LEU MET SEQRES 8 A 257 ILE GLY LEU VAL TRP ARG SER MET GLU HIS PRO GLY LYS SEQRES 9 A 257 LEU LEU PHE ALA PRO ASN LEU LEU LEU ASP ARG ASN GLN SEQRES 10 A 257 GLY LYS CYS VAL GLU GLY MET VAL GLU ILE PHE ASP MET SEQRES 11 A 257 LEU LEU ALA THR SER SER ARG PHE ARG MET MET ASN LEU SEQRES 12 A 257 GLN GLY GLU GLU PHE VAL CYS LEU LYS SER ILE ILE LEU SEQRES 13 A 257 LEU ASN SER GLY VAL TYR THR PHE LEU SER SER THR LEU SEQRES 14 A 257 LYS SER LEU GLU GLU LYS ASP HIS ILE HIS ARG VAL LEU SEQRES 15 A 257 ASP LYS ILE THR ASP THR LEU ILE HIS LEU MET ALA LYS SEQRES 16 A 257 ALA GLY LEU THR LEU GLN GLN GLN HIS GLN ARG LEU ALA SEQRES 17 A 257 GLN LEU LEU LEU ILE LEU SER HIS ILE ARG HIS MET SER SEQRES 18 A 257 ASN LYS GLY MET GLU HIS LEU TYR SER MET LYS CYS LYS SEQRES 19 A 257 ASN VAL VAL PRO LEU SER ASP LEU LEU LEU GLU MET LEU SEQRES 20 A 257 ASP ALA HIS ARG LEU HIS ALA PRO THR SER SEQRES 1 B 257 ILE LYS ARG SER LYS LYS ASN SER LEU ALA LEU SER LEU SEQRES 2 B 257 THR ALA ASP GLN MET VAL SER ALA LEU LEU ASP ALA GLU SEQRES 3 B 257 PRO PRO ILE LEU TYR SER GLU TYR ASP PRO THR ARG PRO SEQRES 4 B 257 PHE SER GLU ALA SER MET MET GLY LEU LEU THR ASN LEU SEQRES 5 B 257 ALA ASP ARG GLU LEU VAL HIS MET ILE ASN TRP ALA LYS SEQRES 6 B 257 ARG VAL PRO GLY PHE VAL ASP LEU THR LEU HIS ASP GLN SEQRES 7 B 257 VAL HIS LEU LEU GLU CYS ALA TRP LEU GLU ILE LEU MET SEQRES 8 B 257 ILE GLY LEU VAL TRP ARG SER MET GLU HIS PRO GLY LYS SEQRES 9 B 257 LEU LEU PHE ALA PRO ASN LEU LEU LEU ASP ARG ASN GLN SEQRES 10 B 257 GLY LYS CYS VAL GLU GLY MET VAL GLU ILE PHE ASP MET SEQRES 11 B 257 LEU LEU ALA THR SER SER ARG PHE ARG MET MET ASN LEU SEQRES 12 B 257 GLN GLY GLU GLU PHE VAL CYS LEU LYS SER ILE ILE LEU SEQRES 13 B 257 LEU ASN SER GLY VAL TYR THR PHE LEU SER SER THR LEU SEQRES 14 B 257 LYS SER LEU GLU GLU LYS ASP HIS ILE HIS ARG VAL LEU SEQRES 15 B 257 ASP LYS ILE THR ASP THR LEU ILE HIS LEU MET ALA LYS SEQRES 16 B 257 ALA GLY LEU THR LEU GLN GLN GLN HIS GLN ARG LEU ALA SEQRES 17 B 257 GLN LEU LEU LEU ILE LEU SER HIS ILE ARG HIS MET SER SEQRES 18 B 257 ASN LYS GLY MET GLU HIS LEU TYR SER MET LYS CYS LYS SEQRES 19 B 257 ASN VAL VAL PRO LEU SER ASP LEU LEU LEU GLU MET LEU SEQRES 20 B 257 ASP ALA HIS ARG LEU HIS ALA PRO THR SER SEQRES 1 C 14 LYS HIS LYS ILE LEU HIS ARG LEU LEU GLN ASP SER SER SEQRES 2 C 14 SER SEQRES 1 D 14 LYS HIS LYS ILE LEU HIS ARG LEU LEU GLN ASP SER SER SEQRES 2 D 14 SER HET 5K4 A 900 23 HET 5K4 B 901 23 HETNAM 5K4 4,4'-{[(3S)-3-ETHYLCYCLOHEXYLIDENE]METHANEDIYL}DIPHENOL FORMUL 5 5K4 2(C21 H24 O2) FORMUL 7 HOH *197(H2 O) HELIX 1 AA1 THR A 311 GLU A 323 1 13 HELIX 2 AA2 SER A 338 LYS A 362 1 25 HELIX 3 AA3 GLY A 366 LEU A 370 5 5 HELIX 4 AA4 THR A 371 SER A 395 1 25 HELIX 5 AA5 ARG A 412 LYS A 416 1 5 HELIX 6 AA6 MET A 421 MET A 438 1 18 HELIX 7 AA7 GLN A 441 SER A 456 1 16 HELIX 8 AA8 ASP A 473 ALA A 493 1 21 HELIX 9 AA9 THR A 496 LYS A 531 1 36 HELIX 10 AB1 SER A 537 ALA A 546 1 10 HELIX 11 AB2 LEU B 306 LEU B 310 5 5 HELIX 12 AB3 THR B 311 ALA B 322 1 12 HELIX 13 AB4 SER B 338 LYS B 362 1 25 HELIX 14 AB5 GLY B 366 LEU B 370 5 5 HELIX 15 AB6 THR B 371 SER B 395 1 25 HELIX 16 AB7 GLY B 420 ASN B 439 1 20 HELIX 17 AB8 GLN B 441 SER B 456 1 16 HELIX 18 AB9 SER B 468 ALA B 493 1 26 HELIX 19 AC1 THR B 496 LYS B 531 1 36 HELIX 20 AC2 SER B 537 ALA B 546 1 10 HELIX 21 AC3 HIS B 547 LEU B 549 5 3 HELIX 22 AC4 LYS C 688 LEU C 694 1 7 HELIX 23 AC5 ILE D 689 ASP D 696 1 8 SHEET 1 AA1 2 LYS A 401 ALA A 405 0 SHEET 2 AA1 2 LEU A 408 ASP A 411 -1 O LEU A 410 N LEU A 402 SHEET 1 AA2 2 LYS B 401 ALA B 405 0 SHEET 2 AA2 2 LEU B 408 ASP B 411 -1 O LEU B 410 N LEU B 402 SITE 1 AC1 11 LEU A 346 THR A 347 ALA A 350 GLU A 353 SITE 2 AC1 11 LEU A 387 ARG A 394 PHE A 404 MET A 421 SITE 3 AC1 11 LEU A 428 LEU A 525 LEU A 540 SITE 1 AC2 12 LEU B 346 THR B 347 ALA B 350 GLU B 353 SITE 2 AC2 12 LEU B 387 ARG B 394 PHE B 404 LEU B 428 SITE 3 AC2 12 GLY B 521 LEU B 536 LEU B 540 HOH B1030 CRYST1 54.379 81.276 58.230 90.00 110.28 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018389 0.000000 0.006795 0.00000 SCALE2 0.000000 0.012304 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018308 0.00000