PDB Short entry for 5DYD HEADER TRANSCRIPTION 24-SEP-15 5DYD TITLE CRYSTAL STRUCTURE OF THE ER-ALPHA LIGAND-BINDING DOMAIN IN COMPLEX TITLE 2 WITH THE CYCLOFENIL DERIVATIVE 4,4'-{[(3S)-3-(METHYLSULFANYL) TITLE 3 CYCLOHEXYLIDENE]METHANEDIYL}DIPHENOL COMPND MOL_ID: 1; COMPND 2 MOLECULE: ESTROGEN RECEPTOR; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: LIGAND-BINDING DOMAIN; COMPND 5 SYNONYM: ER,ER-ALPHA,ESTRADIOL RECEPTOR,NUCLEAR RECEPTOR SUBFAMILY 3 COMPND 6 GROUP A MEMBER 1; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: NUCLEAR RECEPTOR COACTIVATOR 2; COMPND 11 CHAIN: C, D; COMPND 12 FRAGMENT: NUCLEAR RECEPTOR-INTERACTING PEPTIDE; COMPND 13 SYNONYM: NCOA-2,CLASS E BASIC HELIX-LOOP-HELIX PROTEIN 75,BHLHE75, COMPND 14 TRANSCRIPTIONAL INTERMEDIARY FACTOR 2,HTIF2; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ESR1, ESR, NR3A1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606 KEYWDS NUCLEAR RECEPTOR, TRANSCRIPTION FACTOR, LIGAND BINDING, PROTEIN- KEYWDS 2 LIGAND COMPLEX, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR J.C.NWACHUKWU,S.SRINIVASAN,Y.ZHENG,S.WANG,J.MIN,C.DONG,Z.LIAO, AUTHOR 2 V.CAVETT,J.NOWAK,R.HOUTMAN,K.E.CARLSON,J.S.JOSAN,O.ELEMENTO, AUTHOR 3 J.A.KATZENELLENBOGEN,H.B.ZHOU,K.W.NETTLES REVDAT 2 27-SEP-23 5DYD 1 REMARK REVDAT 1 04-MAY-16 5DYD 0 JRNL AUTH J.C.NWACHUKWU,S.SRINIVASAN,Y.ZHENG,S.WANG,J.MIN,C.DONG, JRNL AUTH 2 Z.LIAO,J.NOWAK,N.J.WRIGHT,R.HOUTMAN,K.E.CARLSON,J.S.JOSAN, JRNL AUTH 3 O.ELEMENTO,J.A.KATZENELLENBOGEN,H.B.ZHOU,K.W.NETTLES JRNL TITL PREDICTIVE FEATURES OF LIGAND-SPECIFIC SIGNALING THROUGH THE JRNL TITL 2 ESTROGEN RECEPTOR. JRNL REF MOL.SYST.BIOL. V. 12 864 2016 JRNL REFN ESSN 1744-4292 JRNL PMID 27107013 JRNL DOI 10.15252/MSB.20156701 REMARK 2 REMARK 2 RESOLUTION. 2.49 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1690 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.49 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.12 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.5 REMARK 3 NUMBER OF REFLECTIONS : 15415 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.030 REMARK 3 FREE R VALUE TEST SET COUNT : 1546 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.1292 - 5.5246 0.98 1373 155 0.1807 0.2261 REMARK 3 2 5.5246 - 4.3861 0.99 1357 153 0.1805 0.2459 REMARK 3 3 4.3861 - 3.8320 0.97 1318 149 0.1710 0.2140 REMARK 3 4 3.8320 - 3.4818 0.98 1348 146 0.1934 0.2560 REMARK 3 5 3.4818 - 3.2323 0.98 1305 145 0.2279 0.2748 REMARK 3 6 3.2323 - 3.0417 0.97 1323 139 0.2337 0.2755 REMARK 3 7 3.0417 - 2.8894 0.94 1280 150 0.2492 0.2982 REMARK 3 8 2.8894 - 2.7637 0.89 1208 129 0.2491 0.2913 REMARK 3 9 2.7637 - 2.6573 0.85 1145 130 0.2610 0.3450 REMARK 3 10 2.6573 - 2.5656 0.87 1161 130 0.2773 0.3278 REMARK 3 11 2.5656 - 2.4854 0.76 1051 120 0.2942 0.3277 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.390 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3725 REMARK 3 ANGLE : 0.656 5051 REMARK 3 CHIRALITY : 0.023 613 REMARK 3 PLANARITY : 0.003 623 REMARK 3 DIHEDRAL : 12.304 1311 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 16 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 306 THROUGH 321 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.6984 17.4320 -5.5958 REMARK 3 T TENSOR REMARK 3 T11: 0.9059 T22: 1.1874 REMARK 3 T33: 0.5744 T12: 0.4472 REMARK 3 T13: -0.0607 T23: 0.1718 REMARK 3 L TENSOR REMARK 3 L11: 6.0899 L22: 3.7170 REMARK 3 L33: 1.6704 L12: -3.0322 REMARK 3 L13: 1.2584 L23: -0.2454 REMARK 3 S TENSOR REMARK 3 S11: 0.8852 S12: 1.6083 S13: 0.5752 REMARK 3 S21: -1.4593 S22: -0.7287 S23: 0.1161 REMARK 3 S31: -0.9742 S32: -1.2521 S33: -0.3563 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 322 THROUGH 338 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.4201 -2.4600 -6.8728 REMARK 3 T TENSOR REMARK 3 T11: 0.5728 T22: 0.6480 REMARK 3 T33: 0.5284 T12: 0.1040 REMARK 3 T13: 0.0898 T23: -0.0423 REMARK 3 L TENSOR REMARK 3 L11: 9.7945 L22: 9.0316 REMARK 3 L33: 2.6975 L12: -5.0449 REMARK 3 L13: 0.2935 L23: -0.6829 REMARK 3 S TENSOR REMARK 3 S11: 0.4538 S12: 1.0415 S13: -0.2681 REMARK 3 S21: -0.2898 S22: -0.6828 S23: -0.9663 REMARK 3 S31: -0.5393 S32: 0.3679 S33: 0.5194 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 339 THROUGH 394 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.8306 8.0160 2.1647 REMARK 3 T TENSOR REMARK 3 T11: 0.3772 T22: 0.3949 REMARK 3 T33: 0.3742 T12: 0.0051 REMARK 3 T13: 0.0836 T23: 0.0281 REMARK 3 L TENSOR REMARK 3 L11: 6.2148 L22: 5.7221 REMARK 3 L33: 7.7044 L12: -1.2120 REMARK 3 L13: -1.5038 L23: 0.8980 REMARK 3 S TENSOR REMARK 3 S11: 0.2507 S12: 0.2568 S13: 0.6374 REMARK 3 S21: 0.0723 S22: -0.0217 S23: -0.4979 REMARK 3 S31: -0.5113 S32: 0.1143 S33: -0.2571 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 395 THROUGH 420 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.1497 -10.8805 0.2237 REMARK 3 T TENSOR REMARK 3 T11: 0.9963 T22: 0.5630 REMARK 3 T33: 0.6458 T12: -0.0479 REMARK 3 T13: 0.2649 T23: -0.0793 REMARK 3 L TENSOR REMARK 3 L11: 7.6302 L22: 6.7216 REMARK 3 L33: 7.9032 L12: -0.3192 REMARK 3 L13: -2.9089 L23: 1.9425 REMARK 3 S TENSOR REMARK 3 S11: -0.3962 S12: 0.3001 S13: -1.6871 REMARK 3 S21: 0.6753 S22: 0.0013 S23: 0.3817 REMARK 3 S31: 1.8461 S32: 0.2681 S33: 0.4006 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 421 THROUGH 437 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.3480 -8.0924 7.1561 REMARK 3 T TENSOR REMARK 3 T11: 0.8964 T22: 0.6326 REMARK 3 T33: 0.6151 T12: -0.1354 REMARK 3 T13: 0.2574 T23: 0.0645 REMARK 3 L TENSOR REMARK 3 L11: 5.5976 L22: 8.5866 REMARK 3 L33: 7.1672 L12: -0.9308 REMARK 3 L13: 5.5928 L23: 0.3060 REMARK 3 S TENSOR REMARK 3 S11: 0.5002 S12: -0.3830 S13: -1.9634 REMARK 3 S21: 0.3083 S22: -0.2021 S23: -0.2340 REMARK 3 S31: 1.3106 S32: -1.1343 S33: -0.1624 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 438 THROUGH 496 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.1979 11.4744 3.6819 REMARK 3 T TENSOR REMARK 3 T11: 0.5684 T22: 0.7929 REMARK 3 T33: 0.3827 T12: 0.2244 REMARK 3 T13: 0.0874 T23: 0.0753 REMARK 3 L TENSOR REMARK 3 L11: 7.5634 L22: 5.8896 REMARK 3 L33: 3.3645 L12: 0.5151 REMARK 3 L13: -2.3427 L23: -0.1046 REMARK 3 S TENSOR REMARK 3 S11: 0.2120 S12: 0.2201 S13: 0.4200 REMARK 3 S21: -0.6243 S22: -0.2661 S23: 0.2401 REMARK 3 S31: -0.8696 S32: -1.1512 S33: 0.1491 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 497 THROUGH 548 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.6974 2.9396 10.5154 REMARK 3 T TENSOR REMARK 3 T11: 0.5701 T22: 0.4340 REMARK 3 T33: 0.2776 T12: -0.0362 REMARK 3 T13: 0.0622 T23: 0.0554 REMARK 3 L TENSOR REMARK 3 L11: 4.9308 L22: 2.8674 REMARK 3 L33: 5.6580 L12: -0.0820 REMARK 3 L13: -1.5895 L23: 1.6498 REMARK 3 S TENSOR REMARK 3 S11: 0.0491 S12: -0.3695 S13: -0.4338 REMARK 3 S21: 0.1956 S22: -0.1923 S23: -0.1423 REMARK 3 S31: 0.5766 S32: -0.0842 S33: 0.1737 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 308 THROUGH 340 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.5085 7.0740 36.0328 REMARK 3 T TENSOR REMARK 3 T11: 0.5557 T22: 0.3784 REMARK 3 T33: 0.4968 T12: 0.1189 REMARK 3 T13: 0.1921 T23: -0.0700 REMARK 3 L TENSOR REMARK 3 L11: 6.5002 L22: 4.5151 REMARK 3 L33: 8.1900 L12: 0.8315 REMARK 3 L13: 0.4149 L23: 0.9826 REMARK 3 S TENSOR REMARK 3 S11: -0.1514 S12: -0.8691 S13: -0.1251 REMARK 3 S21: 0.4370 S22: -0.0635 S23: 0.1436 REMARK 3 S31: 0.1790 S32: -0.9083 S33: 0.1766 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 341 THROUGH 371 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.2247 -1.3347 34.3644 REMARK 3 T TENSOR REMARK 3 T11: 0.8064 T22: 0.4297 REMARK 3 T33: 0.4732 T12: 0.0224 REMARK 3 T13: 0.1874 T23: -0.0161 REMARK 3 L TENSOR REMARK 3 L11: 5.3375 L22: 4.1272 REMARK 3 L33: 8.5530 L12: -0.0228 REMARK 3 L13: 0.0477 L23: 1.0143 REMARK 3 S TENSOR REMARK 3 S11: -0.8497 S12: -0.3195 S13: -0.9128 REMARK 3 S21: 0.2924 S22: 0.3751 S23: 0.2745 REMARK 3 S31: 1.0917 S32: -0.2167 S33: 0.2304 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 372 THROUGH 411 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.1638 6.8500 30.7585 REMARK 3 T TENSOR REMARK 3 T11: 0.5055 T22: 0.4465 REMARK 3 T33: 0.2756 T12: 0.0423 REMARK 3 T13: 0.0574 T23: 0.0110 REMARK 3 L TENSOR REMARK 3 L11: 4.0982 L22: 5.9816 REMARK 3 L33: 9.4135 L12: 0.6066 REMARK 3 L13: -2.7753 L23: -0.1017 REMARK 3 S TENSOR REMARK 3 S11: -0.0833 S12: -0.1907 S13: -0.0623 REMARK 3 S21: 0.4862 S22: -0.1463 S23: 0.1410 REMARK 3 S31: 0.2370 S32: 0.2132 S33: 0.0569 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 412 THROUGH 455 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.1514 12.4191 25.6326 REMARK 3 T TENSOR REMARK 3 T11: 0.6206 T22: 0.5306 REMARK 3 T33: 0.3633 T12: -0.0434 REMARK 3 T13: 0.0756 T23: 0.0059 REMARK 3 L TENSOR REMARK 3 L11: 6.1653 L22: 4.0895 REMARK 3 L33: 9.0341 L12: 0.4342 REMARK 3 L13: -1.5996 L23: 1.0449 REMARK 3 S TENSOR REMARK 3 S11: 0.3574 S12: 0.0199 S13: 0.3558 REMARK 3 S21: 0.1201 S22: -0.0759 S23: -0.3052 REMARK 3 S31: -1.1305 S32: 0.1550 S33: -0.1042 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 456 THROUGH 471 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.1510 -11.5275 15.2671 REMARK 3 T TENSOR REMARK 3 T11: 1.4642 T22: 1.4561 REMARK 3 T33: 1.2244 T12: 0.1649 REMARK 3 T13: 0.2325 T23: 0.2899 REMARK 3 L TENSOR REMARK 3 L11: 7.1617 L22: 6.8646 REMARK 3 L33: 6.9299 L12: -4.5179 REMARK 3 L13: -1.3511 L23: 2.9298 REMARK 3 S TENSOR REMARK 3 S11: 0.8984 S12: -0.3834 S13: -0.9649 REMARK 3 S21: -2.1701 S22: 0.4635 S23: -0.4361 REMARK 3 S31: 0.4133 S32: 0.8417 S33: -0.8260 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 472 THROUGH 529 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.2755 6.8561 17.8227 REMARK 3 T TENSOR REMARK 3 T11: 0.4233 T22: 0.4984 REMARK 3 T33: 0.2294 T12: -0.0212 REMARK 3 T13: 0.1196 T23: -0.0323 REMARK 3 L TENSOR REMARK 3 L11: 8.2517 L22: 3.5826 REMARK 3 L33: 8.7278 L12: -2.1234 REMARK 3 L13: 0.6971 L23: -0.3442 REMARK 3 S TENSOR REMARK 3 S11: -0.1102 S12: 0.4039 S13: 0.1212 REMARK 3 S21: -0.2237 S22: -0.1772 S23: 0.1956 REMARK 3 S31: -0.1575 S32: -0.9480 S33: 0.2235 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 530 THROUGH 548 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.9875 -5.6128 33.0880 REMARK 3 T TENSOR REMARK 3 T11: 0.8856 T22: 0.8143 REMARK 3 T33: 0.9995 T12: 0.1818 REMARK 3 T13: 0.0177 T23: 0.0311 REMARK 3 L TENSOR REMARK 3 L11: 2.5107 L22: 7.7463 REMARK 3 L33: 2.3193 L12: 0.4918 REMARK 3 L13: 2.3358 L23: 0.5766 REMARK 3 S TENSOR REMARK 3 S11: 0.2116 S12: 0.2218 S13: -1.5206 REMARK 3 S21: 0.6463 S22: 0.7019 S23: -0.6811 REMARK 3 S31: 0.0135 S32: 1.1284 S33: 0.0650 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 688 THROUGH 696 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.9403 17.8996 0.2808 REMARK 3 T TENSOR REMARK 3 T11: 0.8640 T22: 1.0069 REMARK 3 T33: 1.0491 T12: -0.0064 REMARK 3 T13: 0.2269 T23: 0.0351 REMARK 3 L TENSOR REMARK 3 L11: 9.7041 L22: 2.1116 REMARK 3 L33: 1.9861 L12: -2.1028 REMARK 3 L13: -2.0157 L23: -1.0108 REMARK 3 S TENSOR REMARK 3 S11: 0.8480 S12: 2.1834 S13: 0.0432 REMARK 3 S21: -0.4022 S22: -1.3139 S23: -0.2264 REMARK 3 S31: -1.5657 S32: 0.5997 S33: 0.5638 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 688 THROUGH 696 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.7158 -12.6314 35.3337 REMARK 3 T TENSOR REMARK 3 T11: 1.6023 T22: 0.6508 REMARK 3 T33: 0.8024 T12: 0.0007 REMARK 3 T13: 0.2572 T23: 0.0616 REMARK 3 L TENSOR REMARK 3 L11: 3.7422 L22: 9.0984 REMARK 3 L33: 6.9272 L12: -0.8625 REMARK 3 L13: 5.1350 L23: -0.8229 REMARK 3 S TENSOR REMARK 3 S11: -0.8351 S12: -0.5841 S13: -1.5807 REMARK 3 S21: 0.1368 S22: 0.1058 S23: 0.6050 REMARK 3 S31: 1.8741 S32: -0.5674 S33: -0.5938 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5DYD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-OCT-15. REMARK 100 THE DEPOSITION ID IS D_1000214024. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : SIDE SCATTERING BENT CUBE I-BEAM REMARK 200 SINGLE CRYSTAL ASYMMETRIC CUT REMARK 200 4.965 DEGS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16311 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.10200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 5.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 6.30 REMARK 200 R MERGE FOR SHELL (I) : 0.79100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 2B1V REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG 3350, 0.05M MGCL2, 0.067M REMARK 280 NACL, 0.1M TRIS, PH 8.3, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 40.64500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 298 REMARK 465 LYS A 299 REMARK 465 ARG A 300 REMARK 465 SER A 301 REMARK 465 LYS A 302 REMARK 465 LYS A 303 REMARK 465 ASN A 304 REMARK 465 SER A 305 REMARK 465 ASP A 332 REMARK 465 PRO A 333 REMARK 465 THR A 334 REMARK 465 ARG A 335 REMARK 465 PRO A 336 REMARK 465 PHE A 461 REMARK 465 LEU A 462 REMARK 465 SER A 463 REMARK 465 SER A 464 REMARK 465 THR A 465 REMARK 465 LEU A 466 REMARK 465 LYS A 467 REMARK 465 SER A 468 REMARK 465 LEU A 469 REMARK 465 GLU A 470 REMARK 465 GLU A 471 REMARK 465 LYS A 472 REMARK 465 VAL A 533 REMARK 465 LEU A 549 REMARK 465 HIS A 550 REMARK 465 ALA A 551 REMARK 465 PRO A 552 REMARK 465 THR A 553 REMARK 465 SER A 554 REMARK 465 ILE B 298 REMARK 465 LYS B 299 REMARK 465 ARG B 300 REMARK 465 SER B 301 REMARK 465 LYS B 302 REMARK 465 LYS B 303 REMARK 465 ASN B 304 REMARK 465 SER B 305 REMARK 465 LEU B 306 REMARK 465 ALA B 307 REMARK 465 PHE B 337 REMARK 465 SER B 338 REMARK 465 GLU B 339 REMARK 465 LEU B 462 REMARK 465 SER B 463 REMARK 465 SER B 464 REMARK 465 THR B 465 REMARK 465 LEU B 466 REMARK 465 LYS B 467 REMARK 465 ASN B 532 REMARK 465 LEU B 549 REMARK 465 HIS B 550 REMARK 465 ALA B 551 REMARK 465 PRO B 552 REMARK 465 THR B 553 REMARK 465 SER B 554 REMARK 465 LYS C 686 REMARK 465 HIS C 687 REMARK 465 SER C 697 REMARK 465 SER C 698 REMARK 465 SER C 699 REMARK 465 LYS D 686 REMARK 465 HIS D 687 REMARK 465 SER D 697 REMARK 465 SER D 698 REMARK 465 SER D 699 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 306 CG CD1 CD2 REMARK 470 LEU A 310 CG CD1 CD2 REMARK 470 GLN A 314 CG CD OE1 NE2 REMARK 470 SER A 317 OG REMARK 470 GLU A 339 CG CD OE1 OE2 REMARK 470 ARG A 363 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 401 CG CD CE NZ REMARK 470 ARG A 412 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 414 CG CD OE1 NE2 REMARK 470 LYS A 416 CG CD CE NZ REMARK 470 GLU A 419 CG CD OE1 OE2 REMARK 470 ARG A 477 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 495 CG CD1 CD2 REMARK 470 LYS A 531 CG CD CE NZ REMARK 470 ARG A 548 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 308 CG CD1 CD2 REMARK 470 SER B 309 OG REMARK 470 LEU B 310 CG CD1 CD2 REMARK 470 GLN B 314 CG CD OE1 NE2 REMARK 470 ARG B 335 CG CD NE CZ NH1 NH2 REMARK 470 HIS B 373 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 401 CG CD CE NZ REMARK 470 ARG B 412 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 413 CG OD1 ND2 REMARK 470 GLN B 414 CG CD OE1 NE2 REMARK 470 LYS B 416 CG CD CE NZ REMARK 470 GLU B 419 CG CD OE1 OE2 REMARK 470 GLU B 423 CG CD OE1 OE2 REMARK 470 MET B 437 CG SD CE REMARK 470 GLU B 471 CG CD OE1 OE2 REMARK 470 ARG B 477 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 481 CG CD CE NZ REMARK 470 LYS B 492 CG CD CE NZ REMARK 470 GLU B 523 CG CD OE1 OE2 REMARK 470 TYR B 526 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS B 531 CG CD CE NZ REMARK 470 VAL B 533 CG1 CG2 REMARK 470 VAL B 534 CG1 CG2 REMARK 470 GLU B 542 CG CD OE1 OE2 REMARK 470 ARG B 548 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 688 CG CD CE NZ REMARK 470 LYS D 688 CG CD CE NZ REMARK 470 ILE D 689 CG1 CG2 CD1 REMARK 470 HIS D 691 CG ND1 CD2 CE1 NE2 REMARK 470 ARG D 692 CG CD NE CZ NH1 NH2 REMARK 470 GLN D 695 CG CD OE1 NE2 REMARK 470 ASP D 696 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ALA A 322 O HOH A 1001 1.99 REMARK 500 O LEU C 694 O HOH C 701 2.14 REMARK 500 O LEU A 511 O HOH A 1002 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 531 40.28 -81.31 REMARK 500 SER B 309 60.30 -100.43 REMARK 500 ASN B 413 -28.56 -164.89 REMARK 500 VAL B 458 -69.59 55.63 REMARK 500 GLU B 470 -79.97 39.72 REMARK 500 GLU B 471 77.39 68.20 REMARK 500 SER B 512 45.98 -88.00 REMARK 500 HIS B 513 -41.66 -154.57 REMARK 500 VAL B 534 65.10 -172.33 REMARK 500 PRO B 535 107.48 -59.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 5K1 A 900 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 5K1 B 901 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5DXR RELATED DB: PDB REMARK 900 5DXR CONTAINS THE SAME PROTEIN COMPLEXED WITH A DIFFERENT REMARK 900 CYCLOFENIL DERIVATIVE DBREF 5DYD A 298 554 UNP P03372 ESR1_HUMAN 298 554 DBREF 5DYD B 298 554 UNP P03372 ESR1_HUMAN 298 554 DBREF 5DYD C 686 699 PDB 5DYD 5DYD 686 699 DBREF 5DYD D 686 699 PDB 5DYD 5DYD 686 699 SEQADV 5DYD SER A 537 UNP P03372 TYR 537 ENGINEERED MUTATION SEQADV 5DYD SER B 537 UNP P03372 TYR 537 ENGINEERED MUTATION SEQRES 1 A 257 ILE LYS ARG SER LYS LYS ASN SER LEU ALA LEU SER LEU SEQRES 2 A 257 THR ALA ASP GLN MET VAL SER ALA LEU LEU ASP ALA GLU SEQRES 3 A 257 PRO PRO ILE LEU TYR SER GLU TYR ASP PRO THR ARG PRO SEQRES 4 A 257 PHE SER GLU ALA SER MET MET GLY LEU LEU THR ASN LEU SEQRES 5 A 257 ALA ASP ARG GLU LEU VAL HIS MET ILE ASN TRP ALA LYS SEQRES 6 A 257 ARG VAL PRO GLY PHE VAL ASP LEU THR LEU HIS ASP GLN SEQRES 7 A 257 VAL HIS LEU LEU GLU CYS ALA TRP LEU GLU ILE LEU MET SEQRES 8 A 257 ILE GLY LEU VAL TRP ARG SER MET GLU HIS PRO GLY LYS SEQRES 9 A 257 LEU LEU PHE ALA PRO ASN LEU LEU LEU ASP ARG ASN GLN SEQRES 10 A 257 GLY LYS CYS VAL GLU GLY MET VAL GLU ILE PHE ASP MET SEQRES 11 A 257 LEU LEU ALA THR SER SER ARG PHE ARG MET MET ASN LEU SEQRES 12 A 257 GLN GLY GLU GLU PHE VAL CYS LEU LYS SER ILE ILE LEU SEQRES 13 A 257 LEU ASN SER GLY VAL TYR THR PHE LEU SER SER THR LEU SEQRES 14 A 257 LYS SER LEU GLU GLU LYS ASP HIS ILE HIS ARG VAL LEU SEQRES 15 A 257 ASP LYS ILE THR ASP THR LEU ILE HIS LEU MET ALA LYS SEQRES 16 A 257 ALA GLY LEU THR LEU GLN GLN GLN HIS GLN ARG LEU ALA SEQRES 17 A 257 GLN LEU LEU LEU ILE LEU SER HIS ILE ARG HIS MET SER SEQRES 18 A 257 ASN LYS GLY MET GLU HIS LEU TYR SER MET LYS CYS LYS SEQRES 19 A 257 ASN VAL VAL PRO LEU SER ASP LEU LEU LEU GLU MET LEU SEQRES 20 A 257 ASP ALA HIS ARG LEU HIS ALA PRO THR SER SEQRES 1 B 257 ILE LYS ARG SER LYS LYS ASN SER LEU ALA LEU SER LEU SEQRES 2 B 257 THR ALA ASP GLN MET VAL SER ALA LEU LEU ASP ALA GLU SEQRES 3 B 257 PRO PRO ILE LEU TYR SER GLU TYR ASP PRO THR ARG PRO SEQRES 4 B 257 PHE SER GLU ALA SER MET MET GLY LEU LEU THR ASN LEU SEQRES 5 B 257 ALA ASP ARG GLU LEU VAL HIS MET ILE ASN TRP ALA LYS SEQRES 6 B 257 ARG VAL PRO GLY PHE VAL ASP LEU THR LEU HIS ASP GLN SEQRES 7 B 257 VAL HIS LEU LEU GLU CYS ALA TRP LEU GLU ILE LEU MET SEQRES 8 B 257 ILE GLY LEU VAL TRP ARG SER MET GLU HIS PRO GLY LYS SEQRES 9 B 257 LEU LEU PHE ALA PRO ASN LEU LEU LEU ASP ARG ASN GLN SEQRES 10 B 257 GLY LYS CYS VAL GLU GLY MET VAL GLU ILE PHE ASP MET SEQRES 11 B 257 LEU LEU ALA THR SER SER ARG PHE ARG MET MET ASN LEU SEQRES 12 B 257 GLN GLY GLU GLU PHE VAL CYS LEU LYS SER ILE ILE LEU SEQRES 13 B 257 LEU ASN SER GLY VAL TYR THR PHE LEU SER SER THR LEU SEQRES 14 B 257 LYS SER LEU GLU GLU LYS ASP HIS ILE HIS ARG VAL LEU SEQRES 15 B 257 ASP LYS ILE THR ASP THR LEU ILE HIS LEU MET ALA LYS SEQRES 16 B 257 ALA GLY LEU THR LEU GLN GLN GLN HIS GLN ARG LEU ALA SEQRES 17 B 257 GLN LEU LEU LEU ILE LEU SER HIS ILE ARG HIS MET SER SEQRES 18 B 257 ASN LYS GLY MET GLU HIS LEU TYR SER MET LYS CYS LYS SEQRES 19 B 257 ASN VAL VAL PRO LEU SER ASP LEU LEU LEU GLU MET LEU SEQRES 20 B 257 ASP ALA HIS ARG LEU HIS ALA PRO THR SER SEQRES 1 C 14 LYS HIS LYS ILE LEU HIS ARG LEU LEU GLN ASP SER SER SEQRES 2 C 14 SER SEQRES 1 D 14 LYS HIS LYS ILE LEU HIS ARG LEU LEU GLN ASP SER SER SEQRES 2 D 14 SER HET 5K1 A 900 23 HET 5K1 B 901 23 HETNAM 5K1 4,4'-{[(3S)-3-(METHYLSULFANYL) HETNAM 2 5K1 CYCLOHEXYLIDENE]METHANEDIYL}DIPHENOL FORMUL 5 5K1 2(C20 H22 O2 S) FORMUL 7 HOH *34(H2 O) HELIX 1 AA1 THR A 311 GLU A 323 1 13 HELIX 2 AA2 SER A 338 ARG A 363 1 26 HELIX 3 AA3 THR A 371 SER A 395 1 25 HELIX 4 AA4 ASN A 413 VAL A 418 5 6 HELIX 5 AA5 GLY A 420 ASN A 439 1 20 HELIX 6 AA6 GLN A 441 SER A 456 1 16 HELIX 7 AA7 HIS A 474 LYS A 492 1 19 HELIX 8 AA8 ALA A 493 LEU A 495 5 3 HELIX 9 AA9 THR A 496 LYS A 531 1 36 HELIX 10 AB1 SER A 537 ALA A 546 1 10 HELIX 11 AB2 THR B 311 ALA B 322 1 12 HELIX 12 AB3 SER B 341 ARG B 363 1 23 HELIX 13 AB4 THR B 371 SER B 395 1 25 HELIX 14 AB5 GLN B 414 VAL B 418 5 5 HELIX 15 AB6 GLY B 420 ASN B 439 1 20 HELIX 16 AB7 GLN B 441 SER B 456 1 16 HELIX 17 AB8 LYS B 472 ALA B 493 1 22 HELIX 18 AB9 THR B 496 CYS B 530 1 35 HELIX 19 AC1 SER B 537 ALA B 546 1 10 HELIX 20 AC2 ILE C 689 LEU C 694 1 6 HELIX 21 AC3 ILE D 689 ASP D 696 1 8 SHEET 1 AA1 2 LYS A 401 ALA A 405 0 SHEET 2 AA1 2 LEU A 408 ASP A 411 -1 O LEU A 410 N LEU A 402 SHEET 1 AA2 2 LYS B 401 ALA B 405 0 SHEET 2 AA2 2 LEU B 408 ASP B 411 -1 O LEU B 410 N LEU B 402 SITE 1 AC1 8 LEU A 346 THR A 347 ALA A 350 GLU A 353 SITE 2 AC1 8 LEU A 387 ARG A 394 HIS A 524 LEU A 525 SITE 1 AC2 7 THR B 347 ALA B 350 GLU B 353 LEU B 387 SITE 2 AC2 7 ARG B 394 HIS B 524 LEU B 540 CRYST1 54.044 81.290 58.192 90.00 111.01 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018503 0.000000 0.007107 0.00000 SCALE2 0.000000 0.012302 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018408 0.00000