PDB Short entry for 5E6J HEADER HYDROLASE 09-OCT-15 5E6J TITLE STRUCTURE OF SARS PLPRO BOUND TO A LYS48-LINKED DI-UBIQUITIN ACTIVITY TITLE 2 BASED PROBE COMPND MOL_ID: 1; COMPND 2 MOLECULE: REPLICASE POLYPROTEIN 1AB; COMPND 3 CHAIN: A, D; COMPND 4 FRAGMENT: UNP RESIDUES 1541-1856; COMPND 5 SYNONYM: PP1AB,ORF1AB POLYPROTEIN; COMPND 6 EC: 3.4.19.12,3.4.22.69,3.4.22.-,2.7.7.48,3.6.4.12,3.6.4.13,2.1.1.-, COMPND 7 3.1.13.-,3.1.-.-; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: UBIQUITIN; COMPND 11 CHAIN: B, E; COMPND 12 ENGINEERED: YES; COMPND 13 MUTATION: YES; COMPND 14 MOL_ID: 3; COMPND 15 MOLECULE: POLYUBIQUITIN-B; COMPND 16 CHAIN: C, F; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN SARS CORONAVIRUS; SOURCE 3 ORGANISM_COMMON: SARS-COV; SOURCE 4 ORGANISM_TAXID: 227859; SOURCE 5 GENE: REP, 1A-1B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL-21(DE3) RIL CODON PLUS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_TAXID: 32630; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 18 ORGANISM_TAXID: 32630 KEYWDS SARS PLPRO, DEUBIQUITINATING ENZYME, UBIQUITIN, ACTIVITY BASED PROBE, KEYWDS 2 K48-LINKAGE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.D.LIMA,M.BEKES REVDAT 8 15-NOV-23 5E6J 1 LINK REVDAT 7 27-SEP-23 5E6J 1 REMARK REVDAT 6 20-NOV-19 5E6J 1 REMARK REVDAT 5 20-DEC-17 5E6J 1 JRNL REVDAT 4 01-NOV-17 5E6J 1 REMARK REVDAT 3 06-SEP-17 5E6J 1 REMARK REVDAT 2 25-JAN-17 5E6J 1 LINK REVDAT 1 18-MAY-16 5E6J 0 JRNL AUTH M.BEKES,G.J.VAN DER HEDEN VAN NOORT,R.EKKEBUS,H.OVAA, JRNL AUTH 2 T.T.HUANG,C.D.LIMA JRNL TITL RECOGNITION OF LYS48-LINKED DI-UBIQUITIN AND JRNL TITL 2 DEUBIQUITINATING ACTIVITIES OF THE SARS CORONAVIRUS JRNL TITL 3 PAPAIN-LIKE PROTEASE. JRNL REF MOL. CELL V. 62 572 2016 JRNL REFN ISSN 1097-4164 JRNL PMID 27203180 JRNL DOI 10.1016/J.MOLCEL.2016.04.016 REMARK 2 REMARK 2 RESOLUTION. 2.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.22 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.260 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 50864 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.234 REMARK 3 R VALUE (WORKING SET) : 0.232 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 2590 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.2235 - 7.5961 0.98 2531 148 0.1826 0.2277 REMARK 3 2 7.5961 - 6.0327 0.97 2562 129 0.2261 0.2418 REMARK 3 3 6.0327 - 5.2712 0.99 2544 136 0.2095 0.2492 REMARK 3 4 5.2712 - 4.7897 1.00 2627 136 0.1901 0.2032 REMARK 3 5 4.7897 - 4.4466 1.00 2592 163 0.1953 0.2171 REMARK 3 6 4.4466 - 4.1846 0.99 2569 148 0.1936 0.2121 REMARK 3 7 4.1846 - 3.9751 0.96 2491 147 0.2100 0.2306 REMARK 3 8 3.9751 - 3.8021 0.94 2448 130 0.2175 0.3125 REMARK 3 9 3.8021 - 3.6558 0.97 2542 125 0.2325 0.2299 REMARK 3 10 3.6558 - 3.5297 0.98 2566 158 0.2635 0.3094 REMARK 3 11 3.5297 - 3.4194 0.97 2526 113 0.2685 0.3491 REMARK 3 12 3.4194 - 3.3216 0.98 2572 126 0.2760 0.3176 REMARK 3 13 3.3216 - 3.2342 0.97 2515 127 0.2855 0.3498 REMARK 3 14 3.2342 - 3.1553 0.96 2510 135 0.3087 0.3387 REMARK 3 15 3.1553 - 3.0836 0.96 2549 129 0.3088 0.4227 REMARK 3 16 3.0836 - 3.0180 0.98 2513 140 0.3412 0.3418 REMARK 3 17 3.0180 - 2.9576 0.97 2558 137 0.3620 0.3423 REMARK 3 18 2.9576 - 2.9018 0.97 2547 126 0.3677 0.3937 REMARK 3 19 2.9018 - 2.8500 0.98 2512 137 0.3625 0.4020 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.410 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.190 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 7453 REMARK 3 ANGLE : 0.601 10091 REMARK 3 CHIRALITY : 0.025 1167 REMARK 3 PLANARITY : 0.002 1292 REMARK 3 DIHEDRAL : 11.869 2728 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5E6J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-OCT-15. REMARK 100 THE DEPOSITION ID IS D_1000214433. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-FEB-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979100 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26147 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.850 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.9900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.53000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.970 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 4MM3, 1UBQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES, 0.1 M LITHIUM ACETATE, 17% REMARK 280 PEG 6000, PH 5.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 285K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 34.11950 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: TRIMER CONFIRMED BY CROSS-LINKING AND GEL FILTRATION REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 VAL A 3 REMARK 465 HIS A 321 REMARK 465 HIS A 322 REMARK 465 HIS A 323 REMARK 465 HIS A 324 REMARK 465 HIS A 325 REMARK 465 MET D 1 REMARK 465 GLU D 2 REMARK 465 VAL D 3 REMARK 465 PRO D 317 REMARK 465 LEU D 318 REMARK 465 GLU D 319 REMARK 465 HIS D 320 REMARK 465 HIS D 321 REMARK 465 HIS D 322 REMARK 465 HIS D 323 REMARK 465 HIS D 324 REMARK 465 HIS D 325 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 4 CG CD CE NZ REMARK 470 ARG A 229 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 253 CG CD CE NZ REMARK 470 LYS A 298 CG CD CE NZ REMARK 470 GLU A 319 CG CD OE1 OE2 REMARK 470 ARG C 72 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 74 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 44 CG CD CE NZ REMARK 470 LYS D 46 CG CD CE NZ REMARK 470 CYS D 190 SG REMARK 470 LYS D 253 CG CD CE NZ REMARK 470 LYS D 298 CG CD CE NZ REMARK 470 MET F 1 CG SD CE REMARK 470 ARG F 72 CG CD NE CZ NH1 NH2 REMARK 470 ARG F 74 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N5 5MW E 48 O GLY F 75 2.16 REMARK 500 OE2 GLU D 180 OG1 THR F 9 2.19 REMARK 500 N5 5MW B 48 O GLY C 75 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 31 -59.81 -124.07 REMARK 500 PHE A 96 74.48 -117.67 REMARK 500 SER A 104 -162.81 -113.04 REMARK 500 CYS A 190 -160.30 -112.00 REMARK 500 GLN A 256 -73.38 -55.55 REMARK 500 LEU A 260 -62.32 -97.00 REMARK 500 LYS A 280 -89.79 -136.48 REMARK 500 THR A 282 -164.93 -104.24 REMARK 500 THR A 309 -65.31 -133.72 REMARK 500 GLU A 319 97.83 -57.94 REMARK 500 LYS B 11 103.49 -58.55 REMARK 500 GLU B 64 44.09 38.45 REMARK 500 ARG B 74 75.71 -116.61 REMARK 500 ASP D 77 99.68 -64.41 REMARK 500 SER D 104 -167.00 -103.67 REMARK 500 ASP D 144 -74.93 -82.05 REMARK 500 ALA D 145 -3.25 61.17 REMARK 500 SER D 181 34.55 -84.55 REMARK 500 CYS D 193 -81.24 -63.15 REMARK 500 THR D 258 -0.36 -142.07 REMARK 500 CYS D 271 135.51 -172.23 REMARK 500 LYS D 280 -122.30 -113.11 REMARK 500 THR D 282 -148.06 -135.10 REMARK 500 SER D 295 -67.70 -99.32 REMARK 500 THR D 309 -77.74 -116.92 REMARK 500 THR D 314 53.07 -113.15 REMARK 500 LYS E 11 96.81 -61.82 REMARK 500 LYS E 33 -50.57 -125.42 REMARK 500 GLU E 64 55.82 39.12 REMARK 500 ARG E 74 68.85 -107.41 REMARK 500 LYS F 33 -42.47 -144.69 REMARK 500 GLN F 62 -153.80 -136.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 402 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 192 NE2 REMARK 620 2 HIS A 320 NE2 119.6 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide GLY E 75 and AYE E REMARK 800 76 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide AYE E 76 and CYS D REMARK 800 112 DBREF 5E6J A 2 317 UNP P0C6X7 R1AB_CVHSA 1541 1856 DBREF 5E6J B 1 75 UNP P0CG48 UBC_HUMAN 1 75 DBREF 5E6J C 1 75 UNP P0CG47 UBB_HUMAN 1 75 DBREF 5E6J D 2 317 UNP P0C6X7 R1AB_CVHSA 1541 1856 DBREF 5E6J E 1 75 UNP P0CG48 UBC_HUMAN 1 75 DBREF 5E6J F 1 75 UNP P0CG47 UBB_HUMAN 1 75 SEQADV 5E6J MET A 1 UNP P0C6X7 INITIATING METHIONINE SEQADV 5E6J LEU A 318 UNP P0C6X7 EXPRESSION TAG SEQADV 5E6J GLU A 319 UNP P0C6X7 EXPRESSION TAG SEQADV 5E6J HIS A 320 UNP P0C6X7 EXPRESSION TAG SEQADV 5E6J HIS A 321 UNP P0C6X7 EXPRESSION TAG SEQADV 5E6J HIS A 322 UNP P0C6X7 EXPRESSION TAG SEQADV 5E6J HIS A 323 UNP P0C6X7 EXPRESSION TAG SEQADV 5E6J HIS A 324 UNP P0C6X7 EXPRESSION TAG SEQADV 5E6J HIS A 325 UNP P0C6X7 EXPRESSION TAG SEQADV 5E6J AYE B 76 UNP P0CG48 ENGINEERED MUTATION SEQADV 5E6J MET D 1 UNP P0C6X7 INITIATING METHIONINE SEQADV 5E6J LEU D 318 UNP P0C6X7 EXPRESSION TAG SEQADV 5E6J GLU D 319 UNP P0C6X7 EXPRESSION TAG SEQADV 5E6J HIS D 320 UNP P0C6X7 EXPRESSION TAG SEQADV 5E6J HIS D 321 UNP P0C6X7 EXPRESSION TAG SEQADV 5E6J HIS D 322 UNP P0C6X7 EXPRESSION TAG SEQADV 5E6J HIS D 323 UNP P0C6X7 EXPRESSION TAG SEQADV 5E6J HIS D 324 UNP P0C6X7 EXPRESSION TAG SEQADV 5E6J HIS D 325 UNP P0C6X7 EXPRESSION TAG SEQADV 5E6J AYE E 76 UNP P0CG48 ENGINEERED MUTATION SEQRES 1 A 325 MET GLU VAL LYS THR ILE LYS VAL PHE THR THR VAL ASP SEQRES 2 A 325 ASN THR ASN LEU HIS THR GLN LEU VAL ASP MET SER MET SEQRES 3 A 325 THR TYR GLY GLN GLN PHE GLY PRO THR TYR LEU ASP GLY SEQRES 4 A 325 ALA ASP VAL THR LYS ILE LYS PRO HIS VAL ASN HIS GLU SEQRES 5 A 325 GLY LYS THR PHE PHE VAL LEU PRO SER ASP ASP THR LEU SEQRES 6 A 325 ARG SER GLU ALA PHE GLU TYR TYR HIS THR LEU ASP GLU SEQRES 7 A 325 SER PHE LEU GLY ARG TYR MET SER ALA LEU ASN HIS THR SEQRES 8 A 325 LYS LYS TRP LYS PHE PRO GLN VAL GLY GLY LEU THR SER SEQRES 9 A 325 ILE LYS TRP ALA ASP ASN ASN CYS TYR LEU SER SER VAL SEQRES 10 A 325 LEU LEU ALA LEU GLN GLN LEU GLU VAL LYS PHE ASN ALA SEQRES 11 A 325 PRO ALA LEU GLN GLU ALA TYR TYR ARG ALA ARG ALA GLY SEQRES 12 A 325 ASP ALA ALA ASN PHE CYS ALA LEU ILE LEU ALA TYR SER SEQRES 13 A 325 ASN LYS THR VAL GLY GLU LEU GLY ASP VAL ARG GLU THR SEQRES 14 A 325 MET THR HIS LEU LEU GLN HIS ALA ASN LEU GLU SER ALA SEQRES 15 A 325 LYS ARG VAL LEU ASN VAL VAL CYS LYS HIS CYS GLY GLN SEQRES 16 A 325 LYS THR THR THR LEU THR GLY VAL GLU ALA VAL MET TYR SEQRES 17 A 325 MET GLY THR LEU SER TYR ASP ASN LEU LYS THR GLY VAL SEQRES 18 A 325 SER ILE PRO CYS VAL CYS GLY ARG ASP ALA THR GLN TYR SEQRES 19 A 325 LEU VAL GLN GLN GLU SER SER PHE VAL MET MET SER ALA SEQRES 20 A 325 PRO PRO ALA GLU TYR LYS LEU GLN GLN GLY THR PHE LEU SEQRES 21 A 325 CYS ALA ASN GLU TYR THR GLY ASN TYR GLN CYS GLY HIS SEQRES 22 A 325 TYR THR HIS ILE THR ALA LYS GLU THR LEU TYR ARG ILE SEQRES 23 A 325 ASP GLY ALA HIS LEU THR LYS MET SER GLU TYR LYS GLY SEQRES 24 A 325 PRO VAL THR ASP VAL PHE TYR LYS GLU THR SER TYR THR SEQRES 25 A 325 THR THR ILE LYS PRO LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 76 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 B 76 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 B 76 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 B 76 GLN GLN ARG LEU ILE PHE ALA GLY 5MW GLN LEU GLU ASP SEQRES 5 B 76 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 B 76 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY AYE SEQRES 1 C 75 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 C 75 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 C 75 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 C 75 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 C 75 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 C 75 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY SEQRES 1 D 325 MET GLU VAL LYS THR ILE LYS VAL PHE THR THR VAL ASP SEQRES 2 D 325 ASN THR ASN LEU HIS THR GLN LEU VAL ASP MET SER MET SEQRES 3 D 325 THR TYR GLY GLN GLN PHE GLY PRO THR TYR LEU ASP GLY SEQRES 4 D 325 ALA ASP VAL THR LYS ILE LYS PRO HIS VAL ASN HIS GLU SEQRES 5 D 325 GLY LYS THR PHE PHE VAL LEU PRO SER ASP ASP THR LEU SEQRES 6 D 325 ARG SER GLU ALA PHE GLU TYR TYR HIS THR LEU ASP GLU SEQRES 7 D 325 SER PHE LEU GLY ARG TYR MET SER ALA LEU ASN HIS THR SEQRES 8 D 325 LYS LYS TRP LYS PHE PRO GLN VAL GLY GLY LEU THR SER SEQRES 9 D 325 ILE LYS TRP ALA ASP ASN ASN CYS TYR LEU SER SER VAL SEQRES 10 D 325 LEU LEU ALA LEU GLN GLN LEU GLU VAL LYS PHE ASN ALA SEQRES 11 D 325 PRO ALA LEU GLN GLU ALA TYR TYR ARG ALA ARG ALA GLY SEQRES 12 D 325 ASP ALA ALA ASN PHE CYS ALA LEU ILE LEU ALA TYR SER SEQRES 13 D 325 ASN LYS THR VAL GLY GLU LEU GLY ASP VAL ARG GLU THR SEQRES 14 D 325 MET THR HIS LEU LEU GLN HIS ALA ASN LEU GLU SER ALA SEQRES 15 D 325 LYS ARG VAL LEU ASN VAL VAL CYS LYS HIS CYS GLY GLN SEQRES 16 D 325 LYS THR THR THR LEU THR GLY VAL GLU ALA VAL MET TYR SEQRES 17 D 325 MET GLY THR LEU SER TYR ASP ASN LEU LYS THR GLY VAL SEQRES 18 D 325 SER ILE PRO CYS VAL CYS GLY ARG ASP ALA THR GLN TYR SEQRES 19 D 325 LEU VAL GLN GLN GLU SER SER PHE VAL MET MET SER ALA SEQRES 20 D 325 PRO PRO ALA GLU TYR LYS LEU GLN GLN GLY THR PHE LEU SEQRES 21 D 325 CYS ALA ASN GLU TYR THR GLY ASN TYR GLN CYS GLY HIS SEQRES 22 D 325 TYR THR HIS ILE THR ALA LYS GLU THR LEU TYR ARG ILE SEQRES 23 D 325 ASP GLY ALA HIS LEU THR LYS MET SER GLU TYR LYS GLY SEQRES 24 D 325 PRO VAL THR ASP VAL PHE TYR LYS GLU THR SER TYR THR SEQRES 25 D 325 THR THR ILE LYS PRO LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 E 76 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 E 76 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 E 76 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 E 76 GLN GLN ARG LEU ILE PHE ALA GLY 5MW GLN LEU GLU ASP SEQRES 5 E 76 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 E 76 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY AYE SEQRES 1 F 75 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 F 75 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 F 75 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 F 75 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 F 75 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 F 75 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY MODRES 5E6J 5MW B 48 LYS MODIFIED RESIDUE MODRES 5E6J 5MW E 48 LYS MODIFIED RESIDUE HET 5MW B 48 14 HET AYE B 76 4 HET 5MW E 48 14 HET AYE E 76 4 HET ACT A 401 4 HET NI A 402 1 HETNAM 5MW (2~{S})-5-[4-(AMINOMETHYL)-1,2,3-TRIAZOL-1-YL]-2- HETNAM 2 5MW AZANYL-PENTANOIC ACID HETNAM AYE PROP-2-EN-1-AMINE HETNAM ACT ACETATE ION HETNAM NI NICKEL (II) ION HETSYN AYE ALLYLAMINE FORMUL 2 5MW 2(C8 H15 N5 O2) FORMUL 2 AYE 2(C3 H7 N) FORMUL 7 ACT C2 H3 O2 1- FORMUL 8 NI NI 2+ FORMUL 9 HOH *55(H2 O) HELIX 1 AA1 THR A 27 GLN A 31 5 5 HELIX 2 AA2 HIS A 48 GLU A 52 5 5 HELIX 3 AA3 ASP A 62 HIS A 74 1 13 HELIX 4 AA4 SER A 79 LYS A 92 1 14 HELIX 5 AA5 ASN A 111 GLN A 123 1 13 HELIX 6 AA6 ALA A 130 GLY A 143 1 14 HELIX 7 AA7 ALA A 145 SER A 156 1 12 HELIX 8 AA8 ASP A 165 GLN A 175 1 11 HELIX 9 AA9 VAL A 203 ALA A 205 5 3 HELIX 10 AB1 TYR A 214 GLY A 220 1 7 HELIX 11 AB2 GLN A 255 PHE A 259 5 5 HELIX 12 AB3 THR B 22 ILE B 30 1 9 HELIX 13 AB4 ILE B 30 GLY B 35 1 6 HELIX 14 AB5 PRO B 37 ASP B 39 5 3 HELIX 15 AB6 THR C 22 GLY C 35 1 14 HELIX 16 AB7 THR D 27 GLY D 33 1 7 HELIX 17 AB8 HIS D 48 GLU D 52 5 5 HELIX 18 AB9 ASP D 62 HIS D 74 1 13 HELIX 19 AC1 SER D 79 LYS D 92 1 14 HELIX 20 AC2 ASN D 111 GLN D 122 1 12 HELIX 21 AC3 ALA D 130 GLY D 143 1 14 HELIX 22 AC4 ALA D 145 SER D 156 1 12 HELIX 23 AC5 ASP D 165 GLN D 175 1 11 HELIX 24 AC6 VAL D 203 ALA D 205 5 3 HELIX 25 AC7 SER D 213 GLY D 220 1 8 HELIX 26 AC8 THR E 22 ILE E 30 1 9 HELIX 27 AC9 ILE E 30 GLY E 35 1 6 HELIX 28 AD1 THR F 22 GLY F 35 1 14 HELIX 29 AD2 PRO F 37 ASP F 39 5 3 SHEET 1 AA110 ALA A 40 ASP A 41 0 SHEET 2 AA110 THR A 35 LEU A 37 -1 N LEU A 37 O ALA A 40 SHEET 3 AA110 THR A 55 VAL A 58 -1 O PHE A 57 N TYR A 36 SHEET 4 AA110 THR A 5 THR A 11 1 N THR A 11 O PHE A 56 SHEET 5 AA110 LEU A 17 ASP A 23 -1 O GLN A 20 N VAL A 8 SHEET 6 AA110 LYS F 11 GLU F 16 1 O THR F 12 N LEU A 17 SHEET 7 AA110 GLN F 2 THR F 7 -1 N ILE F 3 O LEU F 15 SHEET 8 AA110 THR F 66 LEU F 71 1 O LEU F 67 N PHE F 4 SHEET 9 AA110 GLN F 41 PHE F 45 -1 N ILE F 44 O HIS F 68 SHEET 10 AA110 LYS F 48 GLN F 49 -1 O LYS F 48 N PHE F 45 SHEET 1 AA2 4 GLN A 195 THR A 201 0 SHEET 2 AA2 4 LYS A 183 VAL A 189 -1 N ARG A 184 O LEU A 200 SHEET 3 AA2 4 ASP A 230 GLU A 239 -1 O GLU A 239 N LYS A 183 SHEET 4 AA2 4 VAL A 221 PRO A 224 -1 N ILE A 223 O ALA A 231 SHEET 1 AA3 7 MET A 207 MET A 209 0 SHEET 2 AA3 7 PHE A 242 LEU A 254 1 O SER A 246 N TYR A 208 SHEET 3 AA3 7 TYR A 297 LYS A 307 -1 O VAL A 304 N MET A 245 SHEET 4 AA3 7 CYS A 261 GLY A 267 -1 N CYS A 261 O PHE A 305 SHEET 5 AA3 7 GLY A 272 ALA A 279 -1 O THR A 275 N GLU A 264 SHEET 6 AA3 7 LEU A 283 ASP A 287 -1 O TYR A 284 N THR A 278 SHEET 7 AA3 7 HIS A 290 MET A 294 -1 O HIS A 290 N ASP A 287 SHEET 1 AA4 5 THR B 12 GLU B 16 0 SHEET 2 AA4 5 GLN B 2 LYS B 6 -1 N VAL B 5 O ILE B 13 SHEET 3 AA4 5 THR B 66 LEU B 71 1 O LEU B 67 N PHE B 4 SHEET 4 AA4 5 GLN B 41 PHE B 45 -1 N ARG B 42 O VAL B 70 SHEET 5 AA4 5 5MW B 48 GLN B 49 -1 O 5MW B 48 N PHE B 45 SHEET 1 AA510 LYS C 48 GLN C 49 0 SHEET 2 AA510 GLN C 41 PHE C 45 -1 N PHE C 45 O LYS C 48 SHEET 3 AA510 THR C 66 LEU C 71 -1 O HIS C 68 N ILE C 44 SHEET 4 AA510 GLN C 2 THR C 7 1 N LYS C 6 O LEU C 67 SHEET 5 AA510 LYS C 11 GLU C 16 -1 O LEU C 15 N ILE C 3 SHEET 6 AA510 LEU D 17 ASP D 23 1 O LEU D 17 N THR C 12 SHEET 7 AA510 THR D 5 THR D 11 -1 N VAL D 8 O GLN D 20 SHEET 8 AA510 THR D 55 VAL D 58 1 O PHE D 56 N THR D 11 SHEET 9 AA510 THR D 35 LEU D 37 -1 N TYR D 36 O PHE D 57 SHEET 10 AA510 ALA D 40 ASP D 41 -1 O ALA D 40 N LEU D 37 SHEET 1 AA6 2 GLN D 98 VAL D 99 0 SHEET 2 AA6 2 LEU D 102 THR D 103 -1 O LEU D 102 N VAL D 99 SHEET 1 AA7 4 LYS D 196 THR D 201 0 SHEET 2 AA7 4 LYS D 183 VAL D 189 -1 N ARG D 184 O LEU D 200 SHEET 3 AA7 4 ASP D 230 GLU D 239 -1 O VAL D 236 N VAL D 185 SHEET 4 AA7 4 VAL D 221 PRO D 224 -1 N ILE D 223 O ALA D 231 SHEET 1 AA8 4 LYS D 196 THR D 201 0 SHEET 2 AA8 4 LYS D 183 VAL D 189 -1 N ARG D 184 O LEU D 200 SHEET 3 AA8 4 ASP D 230 GLU D 239 -1 O VAL D 236 N VAL D 185 SHEET 4 AA8 4 SER D 310 THR D 312 -1 O TYR D 311 N GLN D 238 SHEET 1 AA9 7 MET D 207 MET D 209 0 SHEET 2 AA9 7 PHE D 242 LEU D 254 1 O SER D 246 N TYR D 208 SHEET 3 AA9 7 TYR D 297 LYS D 307 -1 O VAL D 304 N MET D 245 SHEET 4 AA9 7 CYS D 261 ASN D 268 -1 N ASN D 263 O ASP D 303 SHEET 5 AA9 7 CYS D 271 ALA D 279 -1 O ILE D 277 N ALA D 262 SHEET 6 AA9 7 LEU D 283 ASP D 287 -1 O TYR D 284 N THR D 278 SHEET 7 AA9 7 HIS D 290 MET D 294 -1 O HIS D 290 N ASP D 287 SHEET 1 AB1 5 THR E 12 GLU E 16 0 SHEET 2 AB1 5 GLN E 2 LYS E 6 -1 N VAL E 5 O ILE E 13 SHEET 3 AB1 5 THR E 66 LEU E 71 1 O LEU E 69 N LYS E 6 SHEET 4 AB1 5 GLN E 41 PHE E 45 -1 N ILE E 44 O HIS E 68 SHEET 5 AB1 5 5MW E 48 GLN E 49 -1 O 5MW E 48 N PHE E 45 LINK SG CYS A 112 C2 AYE B 76 1555 1555 1.67 LINK C GLY B 47 N 5MW B 48 1555 1555 1.33 LINK C 5MW B 48 N GLN B 49 1555 1555 1.33 LINK N5 5MW B 48 C GLY C 75 1555 1555 1.34 LINK C GLY B 75 N1 AYE B 76 1555 1555 1.42 LINK SG CYS D 112 C2 AYE E 76 1555 1555 1.66 LINK C GLY E 47 N 5MW E 48 1555 1555 1.33 LINK C 5MW E 48 N GLN E 49 1555 1555 1.33 LINK N5 5MW E 48 C GLY F 75 1555 1555 1.33 LINK C GLY E 75 N1 AYE E 76 1555 1555 1.42 LINK NE2 HIS A 192 NI NI A 402 1555 1555 1.97 LINK NE2 HIS A 320 NI NI A 402 1555 1555 1.97 SITE 1 AC1 4 TRP A 107 ASP A 287 GLY A 288 ALA A 289 SITE 1 AC2 3 HIS A 192 HIS A 320 HOH A 522 SITE 1 AC3 10 TRP D 107 ASN D 110 CYS D 112 TYR D 113 SITE 2 AC3 10 LEU D 163 GLY D 164 TYR D 265 GLY D 272 SITE 3 AC3 10 LEU E 73 ARG E 74 SITE 1 AC4 16 THR D 75 ASP D 77 GLU D 78 TRP D 107 SITE 2 AC4 16 ASN D 110 ASN D 111 TYR D 113 LEU D 114 SITE 3 AC4 16 SER D 115 SER D 116 LEU D 163 GLY D 272 SITE 4 AC4 16 TYR D 274 GLY E 75 ARG F 42 GLY F 47 CRYST1 72.981 68.239 119.021 90.00 103.21 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013702 0.000000 0.003216 0.00000 SCALE2 0.000000 0.014654 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008630 0.00000