PDB Short entry for 5EEQ HEADER SIGNALING PROTEIN/INHIBITOR 23-OCT-15 5EEQ TITLE GRB7 SH2 WITH THE G7-B1 BICYCLIC PEPTIDE INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: GROWTH FACTOR RECEPTOR-BOUND PROTEIN 7; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RERSIDUES 415-532; COMPND 5 SYNONYM: B47,EPIDERMAL GROWTH FACTOR RECEPTOR GRB-7,GRB7 ADAPTER COMPND 6 PROTEIN; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: BICYCLIC PEPTIDE INHIBITOR; COMPND 10 CHAIN: L, M; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GRB7; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630 KEYWDS STAPLE, SH2, INHIBITOR, SIGNALING PROTEIN-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR N.D.AMBAYE,G.M.WATSON,M.C.J.WILCE,G.M.WILCE REVDAT 2 17-APR-24 5EEQ 1 COMPND SOURCE REMARK DBREF REVDAT 2 2 1 SEQRES LINK SITE ATOM REVDAT 1 15-JUN-16 5EEQ 0 JRNL AUTH M.J.GUNZBURG,K.KULKARNI,G.M.WATSON,N.D.AMBAYE,M.P.DEL BORGO, JRNL AUTH 2 R.BRANDT,S.C.PERO,P.PERLMUTTER,M.C.WILCE,J.A.WILCE JRNL TITL UNEXPECTED INVOLVEMENT OF STAPLE LEADS TO REDESIGN OF JRNL TITL 2 SELECTIVE BICYCLIC PEPTIDE INHIBITOR OF GRB7. JRNL REF SCI REP V. 6 27060 2016 JRNL REFN ESSN 2045-2322 JRNL PMID 27257138 JRNL DOI 10.1038/SREP27060 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.31 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 31909 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 1604 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.3185 - 3.5578 0.98 2761 173 0.1512 0.1629 REMARK 3 2 3.5578 - 2.8241 1.00 2758 158 0.1660 0.2025 REMARK 3 3 2.8241 - 2.4672 1.00 2765 138 0.1841 0.1915 REMARK 3 4 2.4672 - 2.2416 1.00 2794 121 0.1757 0.1897 REMARK 3 5 2.2416 - 2.0810 1.00 2763 144 0.1734 0.2211 REMARK 3 6 2.0810 - 1.9583 1.00 2762 136 0.1731 0.1875 REMARK 3 7 1.9583 - 1.8602 1.00 2767 125 0.1719 0.2184 REMARK 3 8 1.8602 - 1.7792 1.00 2729 160 0.1995 0.2485 REMARK 3 9 1.7792 - 1.7107 0.99 2748 147 0.2113 0.2780 REMARK 3 10 1.7107 - 1.6517 1.00 2733 155 0.2422 0.2915 REMARK 3 11 1.6517 - 1.6001 1.00 2725 147 0.2889 0.2994 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.080 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 1904 REMARK 3 ANGLE : 0.935 2563 REMARK 3 CHIRALITY : 0.037 274 REMARK 3 PLANARITY : 0.005 331 REMARK 3 DIHEDRAL : 13.143 687 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 426 THROUGH 437 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.1557 -2.0809 7.9530 REMARK 3 T TENSOR REMARK 3 T11: 0.1831 T22: 0.5545 REMARK 3 T33: 0.4458 T12: 0.1800 REMARK 3 T13: 0.0914 T23: 0.0330 REMARK 3 L TENSOR REMARK 3 L11: 1.8619 L22: 7.7919 REMARK 3 L33: 5.7627 L12: -1.5009 REMARK 3 L13: 0.4704 L23: 3.0604 REMARK 3 S TENSOR REMARK 3 S11: -0.1983 S12: -0.2358 S13: 0.1726 REMARK 3 S21: -0.0579 S22: 0.1836 S23: -1.1743 REMARK 3 S31: 0.2774 S32: 0.9601 S33: -0.1446 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 438 THROUGH 447 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.7086 -13.3248 8.8526 REMARK 3 T TENSOR REMARK 3 T11: 0.4409 T22: 0.2710 REMARK 3 T33: 0.3900 T12: 0.1748 REMARK 3 T13: 0.0615 T23: 0.0140 REMARK 3 L TENSOR REMARK 3 L11: 3.3378 L22: 8.1568 REMARK 3 L33: 3.6893 L12: -2.4345 REMARK 3 L13: -2.7972 L23: -0.8875 REMARK 3 S TENSOR REMARK 3 S11: 0.1372 S12: -0.1760 S13: -0.7263 REMARK 3 S21: -0.4408 S22: -0.0743 S23: -0.1781 REMARK 3 S31: 1.5714 S32: 1.0384 S33: -0.1462 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 448 THROUGH 487 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.1891 -3.0350 7.0155 REMARK 3 T TENSOR REMARK 3 T11: 0.1946 T22: 0.2102 REMARK 3 T33: 0.2132 T12: 0.0649 REMARK 3 T13: 0.0384 T23: -0.0101 REMARK 3 L TENSOR REMARK 3 L11: 2.6036 L22: 3.2664 REMARK 3 L33: 7.0062 L12: 0.1350 REMARK 3 L13: -0.7337 L23: -0.7761 REMARK 3 S TENSOR REMARK 3 S11: -0.1151 S12: 0.0452 S13: -0.1568 REMARK 3 S21: -0.2552 S22: -0.0481 S23: -0.1900 REMARK 3 S31: 0.5577 S32: 0.3759 S33: 0.1797 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 488 THROUGH 528 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.4937 6.9424 10.3358 REMARK 3 T TENSOR REMARK 3 T11: 0.1122 T22: 0.1911 REMARK 3 T33: 0.1911 T12: 0.0222 REMARK 3 T13: 0.0033 T23: -0.0075 REMARK 3 L TENSOR REMARK 3 L11: 4.1705 L22: 4.6344 REMARK 3 L33: 4.8736 L12: 0.6232 REMARK 3 L13: -0.3746 L23: 0.8214 REMARK 3 S TENSOR REMARK 3 S11: 0.0221 S12: 0.0137 S13: 0.0520 REMARK 3 S21: -0.0950 S22: -0.0131 S23: -0.2222 REMARK 3 S31: -0.0557 S32: 0.4634 S33: 0.0249 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 424 THROUGH 437 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.7517 27.7843 20.3536 REMARK 3 T TENSOR REMARK 3 T11: 0.2665 T22: 0.4992 REMARK 3 T33: 0.4798 T12: -0.0847 REMARK 3 T13: -0.1223 T23: 0.0260 REMARK 3 L TENSOR REMARK 3 L11: 1.8668 L22: 5.6496 REMARK 3 L33: 6.0533 L12: 0.6975 REMARK 3 L13: -1.1171 L23: 1.8519 REMARK 3 S TENSOR REMARK 3 S11: -0.1133 S12: -0.1120 S13: 0.0006 REMARK 3 S21: 0.7542 S22: 0.0228 S23: -1.3151 REMARK 3 S31: 0.1129 S32: 1.0456 S33: 0.0506 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 438 THROUGH 454 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.3235 38.4874 14.6037 REMARK 3 T TENSOR REMARK 3 T11: 0.3680 T22: 0.2348 REMARK 3 T33: 0.3455 T12: -0.1318 REMARK 3 T13: -0.0334 T23: 0.0140 REMARK 3 L TENSOR REMARK 3 L11: 3.6495 L22: 4.8170 REMARK 3 L33: 5.5515 L12: 2.3412 REMARK 3 L13: 1.7538 L23: 2.0576 REMARK 3 S TENSOR REMARK 3 S11: -0.0604 S12: 0.1890 S13: 0.3816 REMARK 3 S21: 0.0905 S22: 0.0848 S23: -0.3475 REMARK 3 S31: -0.9943 S32: 0.8408 S33: -0.1006 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 455 THROUGH 475 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.2816 30.7283 21.2349 REMARK 3 T TENSOR REMARK 3 T11: 0.2956 T22: 0.2040 REMARK 3 T33: 0.2283 T12: -0.0667 REMARK 3 T13: -0.0646 T23: -0.0137 REMARK 3 L TENSOR REMARK 3 L11: 3.5618 L22: 2.9213 REMARK 3 L33: 5.3585 L12: -0.4234 REMARK 3 L13: 0.1290 L23: 0.0268 REMARK 3 S TENSOR REMARK 3 S11: -0.0404 S12: -0.3420 S13: 0.1636 REMARK 3 S21: 0.4512 S22: -0.0597 S23: -0.2484 REMARK 3 S31: -0.3062 S32: 0.3502 S33: 0.0802 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 476 THROUGH 487 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.7041 25.2451 22.6619 REMARK 3 T TENSOR REMARK 3 T11: 0.2142 T22: 0.1890 REMARK 3 T33: 0.1571 T12: -0.0144 REMARK 3 T13: -0.0150 T23: -0.0247 REMARK 3 L TENSOR REMARK 3 L11: 5.2739 L22: 9.6336 REMARK 3 L33: 6.3570 L12: -1.0139 REMARK 3 L13: -0.0234 L23: -2.3911 REMARK 3 S TENSOR REMARK 3 S11: -0.0133 S12: -0.2280 S13: -0.2815 REMARK 3 S21: 0.1804 S22: 0.0041 S23: 0.2092 REMARK 3 S31: 0.2916 S32: -0.0163 S33: -0.1951 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 488 THROUGH 527 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.0079 19.6643 16.3816 REMARK 3 T TENSOR REMARK 3 T11: 0.1339 T22: 0.1559 REMARK 3 T33: 0.1979 T12: -0.0207 REMARK 3 T13: -0.0045 T23: -0.0162 REMARK 3 L TENSOR REMARK 3 L11: 4.6490 L22: 5.3270 REMARK 3 L33: 6.6206 L12: -0.5476 REMARK 3 L13: 0.7136 L23: -0.0949 REMARK 3 S TENSOR REMARK 3 S11: -0.0438 S12: -0.0670 S13: -0.0401 REMARK 3 S21: 0.1465 S22: -0.0276 S23: -0.2866 REMARK 3 S31: 0.0872 S32: 0.3331 S33: 0.0470 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 1 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.7112 -1.6130 2.6823 REMARK 3 T TENSOR REMARK 3 T11: 0.2303 T22: 0.2365 REMARK 3 T33: 0.2685 T12: -0.0330 REMARK 3 T13: -0.0043 T23: -0.0122 REMARK 3 L TENSOR REMARK 3 L11: 3.7200 L22: 8.5612 REMARK 3 L33: 2.3247 L12: -3.6560 REMARK 3 L13: 0.4428 L23: 2.9240 REMARK 3 S TENSOR REMARK 3 S11: -0.0217 S12: -0.0254 S13: -0.2087 REMARK 3 S21: -0.1698 S22: -0.1518 S23: 0.8309 REMARK 3 S31: 0.5120 S32: -0.6177 S33: 0.2019 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'M' AND (RESID 1 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.7942 28.2722 23.0136 REMARK 3 T TENSOR REMARK 3 T11: 0.2400 T22: 0.2143 REMARK 3 T33: 0.2149 T12: 0.0417 REMARK 3 T13: 0.0031 T23: -0.0123 REMARK 3 L TENSOR REMARK 3 L11: 5.2280 L22: 5.9046 REMARK 3 L33: 2.7715 L12: 1.0339 REMARK 3 L13: -1.9316 L23: 3.0433 REMARK 3 S TENSOR REMARK 3 S11: 0.0582 S12: 0.1705 S13: 0.1436 REMARK 3 S21: 0.0744 S22: -0.1835 S23: 0.6259 REMARK 3 S31: -0.7473 S32: -0.6710 S33: 0.2043 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5EEQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-DEC-15. REMARK 100 THE DEPOSITION ID IS D_1000214795. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-OCT-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.954 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31961 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 40.310 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS PH 5.5, 25% (W/V) PEG REMARK 280 3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 31.90550 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, M REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 413 REMARK 465 SER A 414 REMARK 465 PRO A 415 REMARK 465 ALA A 416 REMARK 465 SER A 417 REMARK 465 GLY A 418 REMARK 465 THR A 419 REMARK 465 SER A 420 REMARK 465 LEU A 421 REMARK 465 SER A 422 REMARK 465 ALA A 423 REMARK 465 ALA A 424 REMARK 465 ILE A 425 REMARK 465 ARG A 529 REMARK 465 VAL A 530 REMARK 465 ALA A 531 REMARK 465 LEU A 532 REMARK 465 GLY B 413 REMARK 465 SER B 414 REMARK 465 PRO B 415 REMARK 465 ALA B 416 REMARK 465 SER B 417 REMARK 465 GLY B 418 REMARK 465 THR B 419 REMARK 465 SER B 420 REMARK 465 LEU B 421 REMARK 465 SER B 422 REMARK 465 ALA B 423 REMARK 465 THR B 528 REMARK 465 ARG B 529 REMARK 465 VAL B 530 REMARK 465 ALA B 531 REMARK 465 LEU B 532 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 426 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 427 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 435 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 486 CG CD OE1 OE2 REMARK 470 GLU A 488 CG CD OE1 OE2 REMARK 470 ARG A 490 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 427 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 435 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 486 CG CD OE1 OE2 REMARK 470 GLU B 488 CG CD OE1 OE2 REMARK 470 ARG B 490 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 714 O HOH B 718 2.17 REMARK 500 O HOH A 752 O HOH L 109 2.17 REMARK 500 CB SER M 1 C4 73C M 8 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 496 41.23 -141.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Ligand residues 48V L 12 REMARK 800 through PRO L 10 bound to SER L 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Ligand 73C L 11 bound to SER L REMARK 800 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Ligand 73C L 11 bound to SER L REMARK 800 8 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Ligand 73C M 11 bound to SER M REMARK 800 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Ligand residues 48V M 12 REMARK 800 through PRO M 10 bound to SER M 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Ligand 73C M 11 bound to SER M REMARK 800 8 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5EEL RELATED DB: PDB DBREF 5EEQ A 415 532 UNP Q14451 GRB7_HUMAN 415 532 DBREF 5EEQ B 415 532 UNP Q14451 GRB7_HUMAN 415 532 DBREF 5EEQ L 1 11 PDB 5EEQ 5EEQ 1 11 DBREF 5EEQ M 1 11 PDB 5EEQ 5EEQ 1 11 SEQADV 5EEQ GLY A 413 UNP Q14451 EXPRESSION TAG SEQADV 5EEQ SER A 414 UNP Q14451 EXPRESSION TAG SEQADV 5EEQ GLY B 413 UNP Q14451 EXPRESSION TAG SEQADV 5EEQ SER B 414 UNP Q14451 EXPRESSION TAG SEQRES 1 A 120 GLY SER PRO ALA SER GLY THR SER LEU SER ALA ALA ILE SEQRES 2 A 120 HIS ARG THR GLN LEU TRP PHE HIS GLY ARG ILE SER ARG SEQRES 3 A 120 GLU GLU SER GLN ARG LEU ILE GLY GLN GLN GLY LEU VAL SEQRES 4 A 120 ASP GLY LEU PHE LEU VAL ARG GLU SER GLN ARG ASN PRO SEQRES 5 A 120 GLN GLY PHE VAL LEU SER LEU CYS HIS LEU GLN LYS VAL SEQRES 6 A 120 LYS HIS TYR LEU ILE LEU PRO SER GLU GLU GLU GLY ARG SEQRES 7 A 120 LEU TYR PHE SER MET ASP ASP GLY GLN THR ARG PHE THR SEQRES 8 A 120 ASP LEU LEU GLN LEU VAL GLU PHE HIS GLN LEU ASN ARG SEQRES 9 A 120 GLY ILE LEU PRO CYS LEU LEU ARG HIS CYS CYS THR ARG SEQRES 10 A 120 VAL ALA LEU SEQRES 1 B 120 GLY SER PRO ALA SER GLY THR SER LEU SER ALA ALA ILE SEQRES 2 B 120 HIS ARG THR GLN LEU TRP PHE HIS GLY ARG ILE SER ARG SEQRES 3 B 120 GLU GLU SER GLN ARG LEU ILE GLY GLN GLN GLY LEU VAL SEQRES 4 B 120 ASP GLY LEU PHE LEU VAL ARG GLU SER GLN ARG ASN PRO SEQRES 5 B 120 GLN GLY PHE VAL LEU SER LEU CYS HIS LEU GLN LYS VAL SEQRES 6 B 120 LYS HIS TYR LEU ILE LEU PRO SER GLU GLU GLU GLY ARG SEQRES 7 B 120 LEU TYR PHE SER MET ASP ASP GLY GLN THR ARG PHE THR SEQRES 8 B 120 ASP LEU LEU GLN LEU VAL GLU PHE HIS GLN LEU ASN ARG SEQRES 9 B 120 GLY ILE LEU PRO CYS LEU LEU ARG HIS CYS CYS THR ARG SEQRES 10 B 120 VAL ALA LEU SEQRES 1 L 11 SER PHE GLU GLY TYR ASP ASN 73C PHE PRO 48V SEQRES 1 M 11 SER PHE GLU GLY TYR ASP ASN 73C PHE PRO 48V HET 73C L 8 10 HET 48V L 11 10 HET 73C M 8 10 HET 48V M 11 10 HET PO4 A 601 5 HET PO4 B 601 5 HETNAM 73C (2~{S})-2-AZANYL-3-BUTOXY-PROPANOIC ACID HETNAM 48V {[(2R)-2,3-DIAMINO-3-OXOPROPYL]SULFANYL}ACETIC ACID HETNAM PO4 PHOSPHATE ION FORMUL 3 73C 2(C7 H15 N O3) FORMUL 3 48V 2(C5 H10 N2 O3 S) FORMUL 5 PO4 2(O4 P 3-) FORMUL 7 HOH *170(H2 O) HELIX 1 AA1 SER A 437 GLN A 448 1 12 HELIX 2 AA2 ASP A 504 GLN A 513 1 10 HELIX 3 AA3 ALA B 424 GLN B 429 5 6 HELIX 4 AA4 SER B 437 GLN B 448 1 12 HELIX 5 AA5 ASP B 504 GLN B 513 1 10 SHEET 1 AA1 5 ARG A 490 SER A 494 0 SHEET 2 AA1 5 LYS A 476 GLU A 487 -1 N SER A 485 O TYR A 492 SHEET 3 AA1 5 PHE A 467 HIS A 473 -1 N PHE A 467 O ILE A 482 SHEET 4 AA1 5 LEU A 454 GLU A 459 -1 N LEU A 454 O CYS A 472 SHEET 5 AA1 5 HIS A 525 CYS A 526 1 O HIS A 525 N PHE A 455 SHEET 1 AA2 5 ARG B 490 SER B 494 0 SHEET 2 AA2 5 LYS B 476 GLU B 487 -1 N SER B 485 O TYR B 492 SHEET 3 AA2 5 PHE B 467 HIS B 473 -1 N PHE B 467 O ILE B 482 SHEET 4 AA2 5 LEU B 454 GLU B 459 -1 N LEU B 454 O CYS B 472 SHEET 5 AA2 5 HIS B 525 CYS B 526 1 O HIS B 525 N PHE B 455 LINK OG SER L 1 C4 73C L 8 1555 1555 1.32 LINK N SER L 1 C09 48V L 11 1555 1555 1.32 LINK C ASN L 7 N 73C L 8 1555 1555 1.33 LINK C 73C L 8 N PHE L 9 1555 1555 1.33 LINK C PRO L 10 N01 48V L 11 1555 1555 1.32 LINK OG SER M 1 C4 73C M 8 1555 1555 1.32 LINK N SER M 1 C09 48V M 11 1555 1555 1.31 LINK C ASN M 7 N 73C M 8 1555 1555 1.33 LINK C 73C M 8 N PHE M 9 1555 1555 1.33 LINK C PRO M 10 N01 48V M 11 1555 1555 1.32 CISPEP 1 PHE L 9 PRO L 10 0 1.67 CISPEP 2 PHE M 9 PRO M 10 0 0.66 SITE 1 AC1 8 ARG A 438 ARG A 458 SER A 460 GLN A 461 SITE 2 AC1 8 ARG A 462 HOH A 703 HOH A 724 TYR L 5 SITE 1 AC2 8 ARG B 438 ARG B 458 SER B 460 GLN B 461 SITE 2 AC2 8 ARG B 462 HOH B 704 HOH B 721 TYR M 5 SITE 1 AC3 5 SER L 1 PHE L 2 ASN L 7 PHE L 9 SITE 2 AC3 5 HOH L 105 SITE 1 AC4 4 MET A 495 ASP A 496 SER L 1 PHE L 2 SITE 1 AC5 4 MET A 495 ASP A 496 SER L 1 PHE L 2 SITE 1 AC6 4 MET B 495 ASP B 496 SER M 1 PHE M 2 SITE 1 AC7 6 ARG B 427 THR B 428 SER M 1 PHE M 2 SITE 2 AC7 6 ASN M 7 PHE M 9 SITE 1 AC8 4 MET B 495 ASP B 496 SER M 1 PHE M 2 CRYST1 37.081 63.811 52.040 90.00 92.50 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026968 0.000000 0.001177 0.00000 SCALE2 0.000000 0.015671 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019234 0.00000