PDB Short entry for 5EH5 HEADER LYASE 28-OCT-15 5EH5 TITLE HUMAN CARBONIC ANHYDRASE II IN COMPLEX WITH LIGAND COMPND MOL_ID: 1; COMPND 2 MOLECULE: CARBONIC ANHYDRASE 2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CARBONATE DEHYDRATASE II,CARBONIC ANHYDRASE C,CAC,CARBONIC COMPND 5 ANHYDRASE II,CA-II; COMPND 6 EC: 4.2.1.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CA2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HUMAN CARBONIC ANHYDRASE, LIGAND, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR B.REN REVDAT 3 06-MAR-24 5EH5 1 JRNL REMARK REVDAT 2 23-MAR-16 5EH5 1 JRNL REVDAT 1 09-MAR-16 5EH5 0 JRNL AUTH L.A.WOODS,O.DOLEZAL,B.REN,J.H.RYAN,T.S.PEAT,S.A.POULSEN JRNL TITL NATIVE STATE MASS SPECTROMETRY, SURFACE PLASMON RESONANCE, JRNL TITL 2 AND X-RAY CRYSTALLOGRAPHY CORRELATE STRONGLY AS A FRAGMENT JRNL TITL 3 SCREENING COMBINATION. JRNL REF J.MED.CHEM. V. 59 2192 2016 JRNL REFN ISSN 0022-2623 JRNL PMID 26882437 JRNL DOI 10.1021/ACS.JMEDCHEM.5B01940 REMARK 2 REMARK 2 RESOLUTION. 1.21 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.21 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.62 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 72856 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.187 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.750 REMARK 3 FREE R VALUE TEST SET COUNT : 2004 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.6433 - 2.9090 0.99 5184 146 0.1582 0.1482 REMARK 3 2 2.9090 - 2.3090 1.00 5140 145 0.1619 0.1840 REMARK 3 3 2.3090 - 2.0172 1.00 5100 142 0.1521 0.1636 REMARK 3 4 2.0172 - 1.8327 1.00 5096 138 0.1524 0.1975 REMARK 3 5 1.8327 - 1.7014 1.00 5113 146 0.1644 0.1987 REMARK 3 6 1.7014 - 1.6011 1.00 5066 137 0.1746 0.1954 REMARK 3 7 1.6011 - 1.5209 1.00 5063 150 0.1816 0.2102 REMARK 3 8 1.5209 - 1.4547 1.00 5053 142 0.1868 0.2070 REMARK 3 9 1.4547 - 1.3987 1.00 5037 152 0.1945 0.2072 REMARK 3 10 1.3987 - 1.3504 1.00 5121 142 0.1987 0.2304 REMARK 3 11 1.3504 - 1.3082 1.00 5033 145 0.2083 0.2414 REMARK 3 12 1.3082 - 1.2708 1.00 5065 139 0.2109 0.2135 REMARK 3 13 1.2708 - 1.2373 1.00 5061 147 0.2262 0.2363 REMARK 3 14 1.2373 - 1.2071 0.94 4720 133 0.2346 0.2756 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.120 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.260 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 2278 REMARK 3 ANGLE : 1.426 3119 REMARK 3 CHIRALITY : 0.058 321 REMARK 3 PLANARITY : 0.009 415 REMARK 3 DIHEDRAL : 13.731 862 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 5 THROUGH 39 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.1378 -3.4031 23.3084 REMARK 3 T TENSOR REMARK 3 T11: 0.0313 T22: 0.1102 REMARK 3 T33: 0.1385 T12: 0.0121 REMARK 3 T13: 0.0086 T23: -0.0041 REMARK 3 L TENSOR REMARK 3 L11: 0.8441 L22: 1.1399 REMARK 3 L33: 0.6859 L12: 0.1577 REMARK 3 L13: -0.2301 L23: 0.0522 REMARK 3 S TENSOR REMARK 3 S11: -0.1030 S12: -0.1303 S13: -0.0624 REMARK 3 S21: 0.1032 S22: 0.0684 S23: -0.3937 REMARK 3 S31: 0.0463 S32: 0.1728 S33: -0.0296 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 40 THROUGH 61 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.1352 4.8166 17.3229 REMARK 3 T TENSOR REMARK 3 T11: 0.1613 T22: 0.1842 REMARK 3 T33: 0.1291 T12: 0.0090 REMARK 3 T13: -0.0222 T23: 0.0214 REMARK 3 L TENSOR REMARK 3 L11: 0.6510 L22: 0.8890 REMARK 3 L33: 0.7920 L12: -0.3374 REMARK 3 L13: 0.2567 L23: -0.0623 REMARK 3 S TENSOR REMARK 3 S11: 0.0313 S12: -0.2490 S13: 0.0453 REMARK 3 S21: -0.1454 S22: 0.0809 S23: 0.2161 REMARK 3 S31: -0.1410 S32: -0.1463 S33: -0.0685 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 62 THROUGH 77 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.5072 7.4646 8.1324 REMARK 3 T TENSOR REMARK 3 T11: 0.2231 T22: 0.0877 REMARK 3 T33: 0.1108 T12: -0.0009 REMARK 3 T13: -0.0348 T23: 0.0167 REMARK 3 L TENSOR REMARK 3 L11: 0.9280 L22: 1.4526 REMARK 3 L33: 0.3250 L12: -0.2778 REMARK 3 L13: -0.1510 L23: 0.0908 REMARK 3 S TENSOR REMARK 3 S11: -0.0217 S12: 0.0344 S13: 0.2380 REMARK 3 S21: -0.3834 S22: 0.0243 S23: 0.0319 REMARK 3 S31: -0.1956 S32: 0.0167 S33: -0.0226 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 78 THROUGH 237 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.4225 -1.8697 13.5964 REMARK 3 T TENSOR REMARK 3 T11: 0.0716 T22: 0.0536 REMARK 3 T33: 0.0404 T12: -0.0027 REMARK 3 T13: -0.0122 T23: 0.0043 REMARK 3 L TENSOR REMARK 3 L11: 0.6036 L22: 1.4852 REMARK 3 L33: 0.6492 L12: -0.0487 REMARK 3 L13: -0.0814 L23: 0.1438 REMARK 3 S TENSOR REMARK 3 S11: -0.0040 S12: 0.0301 S13: 0.0070 REMARK 3 S21: -0.2430 S22: 0.0194 S23: 0.0843 REMARK 3 S31: -0.0379 S32: -0.0110 S33: -0.0214 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 238 THROUGH 260 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.9287 -6.0732 23.7984 REMARK 3 T TENSOR REMARK 3 T11: 0.0584 T22: 0.0809 REMARK 3 T33: 0.0656 T12: 0.0056 REMARK 3 T13: 0.0044 T23: 0.0162 REMARK 3 L TENSOR REMARK 3 L11: 1.0443 L22: 1.2416 REMARK 3 L33: 0.8433 L12: -0.0406 REMARK 3 L13: 0.3860 L23: 0.4312 REMARK 3 S TENSOR REMARK 3 S11: 0.0006 S12: -0.2095 S13: -0.0222 REMARK 3 S21: 0.0544 S22: 0.1043 S23: -0.0666 REMARK 3 S31: 0.0162 S32: 0.0780 S33: -0.0678 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5EH5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-OCT-15. REMARK 100 THE DEPOSITION ID IS D_1000214909. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-APR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 72887 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.207 REMARK 200 RESOLUTION RANGE LOW (A) : 39.622 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 23.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, TRIS-CHLORIDE, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 280K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 20.58300 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 432 O HOH A 518 1.76 REMARK 500 O HOH A 552 O HOH A 671 1.79 REMARK 500 NZ LYS A 167 O HOH A 401 1.80 REMARK 500 O HOH A 552 O HOH A 693 1.83 REMARK 500 O LYS A 45 O HOH A 402 1.83 REMARK 500 O HOH A 495 O HOH A 539 1.84 REMARK 500 O HOH A 654 O HOH A 701 1.95 REMARK 500 O HOH A 618 O HOH A 626 1.96 REMARK 500 NZ LYS A 126 O HOH A 403 1.97 REMARK 500 O HOH A 412 O HOH A 560 1.99 REMARK 500 O HOH A 433 O HOH A 686 2.00 REMARK 500 O HOH A 464 O HOH A 651 2.01 REMARK 500 OD2 ASP A 52 O HOH A 404 2.02 REMARK 500 O HOH A 680 O HOH A 687 2.02 REMARK 500 O HOH A 431 O HOH A 697 2.02 REMARK 500 O HOH A 664 O HOH A 754 2.03 REMARK 500 O HOH A 659 O HOH A 677 2.03 REMARK 500 OD1 ASP A 85 O HOH A 405 2.04 REMARK 500 O HOH A 565 O HOH A 702 2.04 REMARK 500 O HOH A 695 O HOH A 722 2.04 REMARK 500 O HOH A 436 O HOH A 607 2.05 REMARK 500 O HOH A 660 O HOH A 674 2.06 REMARK 500 NE2 GLN A 136 O HOH A 406 2.06 REMARK 500 O HOH A 629 O HOH A 719 2.07 REMARK 500 O HOH A 739 O HOH A 768 2.08 REMARK 500 O HOH A 445 O HOH A 679 2.08 REMARK 500 OE2 GLU A 235 O HOH A 407 2.09 REMARK 500 O HOH A 606 O HOH A 726 2.09 REMARK 500 OE1 GLU A 26 O HOH A 408 2.10 REMARK 500 O HOH A 797 O HOH A 801 2.10 REMARK 500 OD1 ASP A 52 O HOH A 409 2.11 REMARK 500 ND1 HIS A 10 O HOH A 410 2.11 REMARK 500 O HOH A 542 O HOH A 694 2.11 REMARK 500 O HOH A 430 O HOH A 657 2.13 REMARK 500 O HOH A 420 O HOH A 714 2.13 REMARK 500 N TRP A 5 O HOH A 411 2.13 REMARK 500 OD2 ASP A 71 O HOH A 412 2.13 REMARK 500 O HOH A 660 O HOH A 718 2.14 REMARK 500 O HOH A 716 O HOH A 777 2.16 REMARK 500 O HOH A 462 O HOH A 478 2.16 REMARK 500 O HOH A 746 O HOH A 768 2.16 REMARK 500 O HOH A 465 O HOH A 681 2.17 REMARK 500 OE2 GLU A 235 O HOH A 413 2.17 REMARK 500 O HOH A 417 O HOH A 459 2.19 REMARK 500 O HOH A 488 O HOH A 715 2.19 REMARK 500 O HOH A 536 O HOH A 554 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 668 O HOH A 681 1565 1.75 REMARK 500 O HOH A 573 O HOH A 763 1545 1.75 REMARK 500 O HOH A 426 O HOH A 496 1655 1.85 REMARK 500 O HOH A 687 O HOH A 722 2656 1.96 REMARK 500 O HOH A 451 O HOH A 692 2645 2.09 REMARK 500 O HOH A 739 O HOH A 779 2645 2.09 REMARK 500 O HOH A 408 O HOH A 621 2656 2.10 REMARK 500 O HOH A 437 O HOH A 623 2655 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 11 13.65 -140.16 REMARK 500 ARG A 27 59.06 -141.82 REMARK 500 ARG A 27 59.06 -148.29 REMARK 500 LYS A 111 -1.72 72.50 REMARK 500 ASN A 243 48.70 -93.48 REMARK 500 LYS A 251 -135.03 50.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 796 DISTANCE = 6.33 ANGSTROMS REMARK 525 HOH A 797 DISTANCE = 6.50 ANGSTROMS REMARK 525 HOH A 798 DISTANCE = 6.67 ANGSTROMS REMARK 525 HOH A 799 DISTANCE = 6.74 ANGSTROMS REMARK 525 HOH A 800 DISTANCE = 7.58 ANGSTROMS REMARK 525 HOH A 801 DISTANCE = 7.61 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 94 NE2 REMARK 620 2 HIS A 96 NE2 104.2 REMARK 620 3 HIS A 119 ND1 112.0 98.4 REMARK 620 4 XCZ A 303 N6 112.8 112.7 115.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue XCZ A 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5EH7 RELATED DB: PDB REMARK 900 RELATED ID: 5EH8 RELATED DB: PDB REMARK 900 RELATED ID: 5EHV RELATED DB: PDB REMARK 900 RELATED ID: 5EHW RELATED DB: PDB REMARK 900 RELATED ID: 5FLO RELATED DB: PDB REMARK 900 RELATED ID: 5FLP RELATED DB: PDB REMARK 900 RELATED ID: 5FLQ RELATED DB: PDB REMARK 900 RELATED ID: 5FLR RELATED DB: PDB REMARK 900 RELATED ID: 5FLS RELATED DB: PDB REMARK 900 RELATED ID: 5FLT RELATED DB: PDB REMARK 900 RELATED ID: 5FNG RELATED DB: PDB REMARK 900 RELATED ID: 5FNH RELATED DB: PDB REMARK 900 RELATED ID: 5FNI RELATED DB: PDB REMARK 900 RELATED ID: 5FNJ RELATED DB: PDB REMARK 900 RELATED ID: 5FNK RELATED DB: PDB REMARK 900 RELATED ID: 5FNM RELATED DB: PDB DBREF 5EH5 A 1 260 UNP P00918 CAH2_HUMAN 1 260 SEQRES 1 A 260 MET SER HIS HIS TRP GLY TYR GLY LYS HIS ASN GLY PRO SEQRES 2 A 260 GLU HIS TRP HIS LYS ASP PHE PRO ILE ALA LYS GLY GLU SEQRES 3 A 260 ARG GLN SER PRO VAL ASP ILE ASP THR HIS THR ALA LYS SEQRES 4 A 260 TYR ASP PRO SER LEU LYS PRO LEU SER VAL SER TYR ASP SEQRES 5 A 260 GLN ALA THR SER LEU ARG ILE LEU ASN ASN GLY HIS ALA SEQRES 6 A 260 PHE ASN VAL GLU PHE ASP ASP SER GLN ASP LYS ALA VAL SEQRES 7 A 260 LEU LYS GLY GLY PRO LEU ASP GLY THR TYR ARG LEU ILE SEQRES 8 A 260 GLN PHE HIS PHE HIS TRP GLY SER LEU ASP GLY GLN GLY SEQRES 9 A 260 SER GLU HIS THR VAL ASP LYS LYS LYS TYR ALA ALA GLU SEQRES 10 A 260 LEU HIS LEU VAL HIS TRP ASN THR LYS TYR GLY ASP PHE SEQRES 11 A 260 GLY LYS ALA VAL GLN GLN PRO ASP GLY LEU ALA VAL LEU SEQRES 12 A 260 GLY ILE PHE LEU LYS VAL GLY SER ALA LYS PRO GLY LEU SEQRES 13 A 260 GLN LYS VAL VAL ASP VAL LEU ASP SER ILE LYS THR LYS SEQRES 14 A 260 GLY LYS SER ALA ASP PHE THR ASN PHE ASP PRO ARG GLY SEQRES 15 A 260 LEU LEU PRO GLU SER LEU ASP TYR TRP THR TYR PRO GLY SEQRES 16 A 260 SER LEU THR THR PRO PRO LEU LEU GLU CYS VAL THR TRP SEQRES 17 A 260 ILE VAL LEU LYS GLU PRO ILE SER VAL SER SER GLU GLN SEQRES 18 A 260 VAL LEU LYS PHE ARG LYS LEU ASN PHE ASN GLY GLU GLY SEQRES 19 A 260 GLU PRO GLU GLU LEU MET VAL ASP ASN TRP ARG PRO ALA SEQRES 20 A 260 GLN PRO LEU LYS ASN ARG GLN ILE LYS ALA SER PHE LYS HET ZN A 301 1 HET FMT A 302 3 HET XCZ A 303 11 HETNAM ZN ZINC ION HETNAM FMT FORMIC ACID HETNAM XCZ 1.7.6 4-METHYLPYRIMIDINE-2-SULFONAMIDE FORMUL 2 ZN ZN 2+ FORMUL 3 FMT C H2 O2 FORMUL 4 XCZ C5 H7 N3 O2 S FORMUL 5 HOH *401(H2 O) HELIX 1 AA1 HIS A 15 ASP A 19 5 5 HELIX 2 AA2 PHE A 20 GLY A 25 5 6 HELIX 3 AA3 LYS A 126 GLY A 128 5 3 HELIX 4 AA4 ASP A 129 VAL A 134 1 6 HELIX 5 AA5 LYS A 153 GLY A 155 5 3 HELIX 6 AA6 LEU A 156 LEU A 163 1 8 HELIX 7 AA7 ASP A 164 LYS A 167 5 4 HELIX 8 AA8 ASP A 179 LEU A 184 5 6 HELIX 9 AA9 SER A 218 ARG A 226 1 9 SHEET 1 AA1 2 ASP A 32 ILE A 33 0 SHEET 2 AA1 2 THR A 108 VAL A 109 1 O THR A 108 N ILE A 33 SHEET 1 AA210 LYS A 39 TYR A 40 0 SHEET 2 AA210 LYS A 256 ALA A 257 1 O ALA A 257 N LYS A 39 SHEET 3 AA210 TYR A 190 GLY A 195 -1 N THR A 192 O LYS A 256 SHEET 4 AA210 VAL A 206 LEU A 211 -1 O VAL A 206 N GLY A 195 SHEET 5 AA210 LEU A 140 VAL A 149 1 N GLY A 144 O ILE A 209 SHEET 6 AA210 ALA A 116 ASN A 124 -1 N LEU A 118 O ILE A 145 SHEET 7 AA210 TYR A 88 TRP A 97 -1 N HIS A 94 O HIS A 119 SHEET 8 AA210 PHE A 66 PHE A 70 -1 N VAL A 68 O PHE A 93 SHEET 9 AA210 SER A 56 ASN A 61 -1 N ARG A 58 O GLU A 69 SHEET 10 AA210 SER A 172 ASP A 174 -1 O ALA A 173 N ILE A 59 SHEET 1 AA3 6 LEU A 47 SER A 50 0 SHEET 2 AA3 6 VAL A 78 GLY A 81 -1 O VAL A 78 N SER A 50 SHEET 3 AA3 6 TYR A 88 TRP A 97 -1 O TYR A 88 N LEU A 79 SHEET 4 AA3 6 ALA A 116 ASN A 124 -1 O HIS A 119 N HIS A 94 SHEET 5 AA3 6 LEU A 140 VAL A 149 -1 O ILE A 145 N LEU A 118 SHEET 6 AA3 6 ILE A 215 VAL A 217 1 O ILE A 215 N PHE A 146 LINK NE2 HIS A 94 ZN ZN A 301 1555 1555 2.04 LINK NE2 HIS A 96 ZN ZN A 301 1555 1555 2.04 LINK ND1 HIS A 119 ZN ZN A 301 1555 1555 2.03 LINK ZN ZN A 301 N6 XCZ A 303 1555 1555 1.91 CISPEP 1 SER A 29 PRO A 30 0 0.48 CISPEP 2 SER A 29 PRO A 30 0 0.89 CISPEP 3 PRO A 200 PRO A 201 0 12.68 SITE 1 AC1 4 HIS A 94 HIS A 96 HIS A 119 XCZ A 303 SITE 1 AC2 4 TYR A 114 LYS A 148 HOH A 433 HOH A 562 SITE 1 AC3 10 GLN A 92 HIS A 94 HIS A 96 HIS A 119 SITE 2 AC3 10 LEU A 197 THR A 198 THR A 199 TRP A 208 SITE 3 AC3 10 ZN A 301 HOH A 647 CRYST1 42.010 41.166 71.816 90.00 104.07 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023804 0.000000 0.005967 0.00000 SCALE2 0.000000 0.024292 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014355 0.00000