PDB Short entry for 5EZF HEADER DNA 26-NOV-15 5EZF TITLE RACEMIC CRYSTAL STRUCTURES OF PRIBNOW BOX CONSENSUS PROMOTER SEQUENCE TITLE 2 (PBCA) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PRIBNOW BOX TEMPLATE STRAND; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: COMPLEMENTARY STRAND; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 8 ORGANISM_TAXID: 32630 KEYWDS PRIBNOW BOX CONSENSUS SEQUENCE, -10 ELEMENT, TRANSCRIPTION KEYWDS 2 INITIATION, B-DNA DOUBLE HELIX, DNA DOUBLE HELIX, DNA EXPDTA X-RAY DIFFRACTION AUTHOR P.K.MANDAL,G.W.COLLIE,B.KAUFFMANN,S.C.SRIVASTAVA,I.HUC REVDAT 4 10-JAN-24 5EZF 1 LINK REVDAT 3 29-NOV-17 5EZF 1 REMARK REVDAT 2 20-JUL-16 5EZF 1 JRNL REVDAT 1 18-MAY-16 5EZF 0 JRNL AUTH P.K.MANDAL,G.W.COLLIE,S.C.SRIVASTAVA,B.KAUFFMANN,I.HUC JRNL TITL STRUCTURE ELUCIDATION OF THE PRIBNOW BOX CONSENSUS PROMOTER JRNL TITL 2 SEQUENCE BY RACEMIC DNA CRYSTALLOGRAPHY. JRNL REF NUCLEIC ACIDS RES. V. 44 5936 2016 JRNL REFN ESSN 1362-4962 JRNL PMID 27137886 JRNL DOI 10.1093/NAR/GKW367 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.K.MANDAL,G.W.COLLIE,B.KAUFFMANN,I.HUC REMARK 1 TITL RACEMIC DNA CRYSTALLOGRAPHY REMARK 1 REF ANGEW. CHEM. INT. ED. V. 53 14424 2014 REMARK 1 REFN ESSN 1521-3773 REMARK 1 PMID 25358289 REMARK 1 DOI 10.1002/ANIE.201409014 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.2_1309 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.86 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 12548 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.297 REMARK 3 R VALUE (WORKING SET) : 0.296 REMARK 3 FREE R VALUE : 0.317 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.870 REMARK 3 FREE R VALUE TEST SET COUNT : 611 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.8630 - 2.6189 1.00 2980 151 0.2515 0.2623 REMARK 3 2 2.6189 - 2.0788 1.00 2994 152 0.3773 0.4310 REMARK 3 3 2.0788 - 1.8160 1.00 2987 148 0.3909 0.4018 REMARK 3 4 1.8160 - 1.6500 1.00 2976 160 0.3954 0.4786 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.680 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 544 REMARK 3 ANGLE : 1.626 836 REMARK 3 CHIRALITY : 0.054 94 REMARK 3 PLANARITY : 0.007 24 REMARK 3 DIHEDRAL : 32.069 232 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 12 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.5817 -1.6376 18.7430 REMARK 3 T TENSOR REMARK 3 T11: 0.3914 T22: 0.3040 REMARK 3 T33: 0.2524 T12: 0.0140 REMARK 3 T13: 0.0175 T23: 0.0024 REMARK 3 L TENSOR REMARK 3 L11: -0.4884 L22: -1.7710 REMARK 3 L33: 0.6009 L12: 0.2976 REMARK 3 L13: -0.5697 L23: 0.2417 REMARK 3 S TENSOR REMARK 3 S11: 0.2168 S12: -0.0961 S13: 0.1069 REMARK 3 S21: -0.0305 S22: 0.2131 S23: -0.0064 REMARK 3 S31: 0.0543 S32: 0.1855 S33: 0.0619 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 12 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.6473 -2.4834 18.3238 REMARK 3 T TENSOR REMARK 3 T11: 0.3472 T22: 0.3786 REMARK 3 T33: 0.3120 T12: 0.0427 REMARK 3 T13: 0.0249 T23: 0.0327 REMARK 3 L TENSOR REMARK 3 L11: -0.6493 L22: -1.0815 REMARK 3 L33: 0.3792 L12: 1.2877 REMARK 3 L13: -0.6239 L23: -0.4558 REMARK 3 S TENSOR REMARK 3 S11: 0.3240 S12: -0.1166 S13: -0.1001 REMARK 3 S21: -0.0225 S22: 0.1040 S23: 0.2642 REMARK 3 S31: -0.1793 S32: 0.5235 S33: 0.0842 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5EZF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-NOV-15. REMARK 100 THE DEPOSITION ID IS D_1000215756. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JUN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9785 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12549 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 32.860 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 1.900 REMARK 200 R MERGE (I) : 0.01900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.9200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 1.90 REMARK 200 R MERGE FOR SHELL (I) : 0.26800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.750 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1FQ2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.85 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: RACEMIC DNA MIXTURE*, HEPES, CALCIUM REMARK 280 CHLORIDE, PEG400 * FOR CRYSTALLIZATION, WE USED FOUR STRANDS 1) REMARK 280 D(CGCTATAATGCG) WITH L-SUGARS 2) D(CGCATTATAGCG) WITH L-SUGARS REMARK 280 AND 3) D(CGCTATAATGCG) WITH D-SUGARS 4) D(CGCATTATAGCG) WITH D- REMARK 280 SUGARS ENANTIO-PURE DNA SOLUTIONS WERE PREPARED FIRST BY DE- REMARK 280 NATURATION FOLLOWED BY SLOW COOLING DOWN PROCESS TO ENSURE REMARK 280 PROPER FOLDING OF THE HETERO-DUPLEX FORMED BETWEEN THE NON-SELF REMARK 280 COMPLEMENTARY STRANDS. AFTER SLOW-ANNEALING, THE ENANTIOPURE REMARK 280 SOLUTIONS WERE MIXED IN EQUIMOLAR RATIO AND THIS RACEMIC DNA REMARK 280 MIXTURE WAS USED FOR CRYSTALLIZATION., PH 7.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P b c a REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 -X,-Y,-Z REMARK 290 6555 X+1/2,Y,-Z+1/2 REMARK 290 7555 X,-Y+1/2,Z+1/2 REMARK 290 8555 -X+1/2,Y+1/2,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.86800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 32.85650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 19.66450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 32.85650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.86800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 19.66450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 20.86800 REMARK 290 SMTRY2 6 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 32.85650 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 -1.000000 0.000000 19.66450 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 32.85650 REMARK 290 SMTRY1 8 -1.000000 0.000000 0.000000 20.86800 REMARK 290 SMTRY2 8 0.000000 1.000000 0.000000 19.66450 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 4560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 131 O HOH B 221 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG A 10 O3' DG A 10 C3' -0.039 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG A 10 C3' - C2' - C1' ANGL. DEV. = -5.2 DEGREES REMARK 500 DC B 1 O4' - C1' - N1 ANGL. DEV. = 3.9 DEGREES REMARK 500 DA B 9 O4' - C1' - N9 ANGL. DEV. = -5.4 DEGREES REMARK 500 DG B 10 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DC B 11 O4' - C1' - N1 ANGL. DEV. = -6.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 101 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 103 O REMARK 620 2 HOH A 126 O 107.7 REMARK 620 3 DC B 1 O5' 100.6 150.1 REMARK 620 4 DG B 12 OP1 109.0 134.6 36.8 REMARK 620 5 HOH B 204 O 176.7 75.5 76.4 67.8 REMARK 620 6 HOH B 206 O 87.7 103.8 67.3 103.6 92.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 102 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 111 O REMARK 620 2 HOH A 115 O 70.1 REMARK 620 3 HOH A 128 O 138.7 69.8 REMARK 620 4 DG B 10 O6 81.7 92.1 109.1 REMARK 620 5 HOH B 203 O 143.2 139.0 77.0 76.4 REMARK 620 6 HOH B 205 O 82.9 151.6 134.0 92.5 69.1 REMARK 620 7 HOH B 212 O 93.3 95.2 81.0 169.1 102.8 77.3 REMARK 620 N 1 2 3 4 5 6 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5ET9 RELATED DB: PDB REMARK 900 5ET9, 5EWB, 5EYQ CONTAINS RACEMIC CRYSTAL STRUCTURES OF THE PRIBNOW REMARK 900 BOX CONSENSUS SEQUENCE IN DIFFERENT SPACE GROUPS REMARK 900 RELATED ID: 5EWB RELATED DB: PDB REMARK 900 5ET9, 5EWB, 5EYQ CONTAINS RACEMIC CRYSTAL STRUCTURES OF THE PRIBNOW REMARK 900 BOX CONSENSUS SEQUENCE IN DIFFERENT SPACE GROUPS REMARK 900 RELATED ID: 5EYQ RELATED DB: PDB REMARK 900 5ET9, 5EWB, 5EYQ CONTAINS RACEMIC CRYSTAL STRUCTURES OF THE PRIBNOW REMARK 900 BOX CONSENSUS SEQUENCE IN DIFFERENT SPACE GROUPS DBREF 5EZF A 1 12 PDB 5EZF 5EZF 1 12 DBREF 5EZF B 1 12 PDB 5EZF 5EZF 1 12 SEQRES 1 A 12 DC DG DC DT DA DT DA DA DT DG DC DG SEQRES 1 B 12 DC DG DC DA DT DT DA DT DA DG DC DG HET CA B 101 1 HET CA B 102 1 HETNAM CA CALCIUM ION FORMUL 3 CA 2(CA 2+) FORMUL 5 HOH *52(H2 O) LINK O HOH A 103 CA CA B 101 8445 1555 2.36 LINK O HOH A 111 CA CA B 102 1555 1555 2.29 LINK O HOH A 115 CA CA B 102 1555 1555 2.54 LINK O HOH A 126 CA CA B 101 2455 1555 2.42 LINK O HOH A 128 CA CA B 102 1555 1555 2.35 LINK O5' DC B 1 CA CA B 101 1555 1555 2.33 LINK O6 DG B 10 CA CA B 102 1555 1555 2.46 LINK OP1 DG B 12 CA CA B 101 1555 7544 2.34 LINK CA CA B 101 O HOH B 204 1555 1555 2.46 LINK CA CA B 101 O HOH B 206 1555 1555 2.48 LINK CA CA B 102 O HOH B 203 1555 1555 2.69 LINK CA CA B 102 O HOH B 205 1555 1555 2.62 LINK CA CA B 102 O HOH B 212 1555 6555 2.35 CRYST1 41.736 39.329 65.713 90.00 90.00 90.00 P b c a 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023960 0.000000 0.000000 0.00000 SCALE2 0.000000 0.025427 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015218 0.00000