PDB Short entry for 5FHT HEADER HYDROLASE 22-DEC-15 5FHT TITLE HTRA2 PROTEASE MUTANT V226K COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE PROTEASE HTRA2, MITOCHONDRIAL; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HIGH TEMPERATURE REQUIREMENT PROTEIN A2,HTRA2,OMI STRESS- COMPND 5 REGULATED ENDOPROTEASE,SERINE PROTEASE 25,SERINE PROTEINASE OMI; COMPND 6 EC: 3.4.21.108; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HTRA2, OMI, PRSS25; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS HYDROLASE, APOPTOSIS EXPDTA X-RAY DIFFRACTION AUTHOR P.GOLIK,G.DUBIN,D.ZURAWA-JANICKA,B.LIPINSKA,M.JARZAB,T.WENTA, AUTHOR 2 A.GIELDON,A.CIARKOWSKI REVDAT 3 10-JAN-24 5FHT 1 LINK REVDAT 2 28-SEP-16 5FHT 1 REVDAT 1 07-SEP-16 5FHT 0 JRNL AUTH A.GIELDON,D.ZURAWA-JANICKA,M.JARZAB,T.WENTA,P.GOLIK,G.DUBIN, JRNL AUTH 2 B.LIPINSKA,J.CIARKOWSKI JRNL TITL DISTINCT 3D ARCHITECTURE AND DYNAMICS OF THE HUMAN JRNL TITL 2 HTRA2(OMI) PROTEASE AND ITS MUTATED VARIANTS. JRNL REF PLOS ONE V. 11 61526 2016 JRNL REFN ESSN 1932-6203 JRNL PMID 27571206 JRNL DOI 10.1371/JOURNAL.PONE.0161526 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 14.57 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 24098 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1297 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1793 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.47 REMARK 3 BIN R VALUE (WORKING SET) : 0.1840 REMARK 3 BIN FREE R VALUE SET COUNT : 89 REMARK 3 BIN FREE R VALUE : 0.2440 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2243 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 200 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.27000 REMARK 3 B22 (A**2) : 0.27000 REMARK 3 B33 (A**2) : -0.88000 REMARK 3 B12 (A**2) : 0.14000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.146 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.146 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.086 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.865 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2343 ; 0.019 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2305 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3211 ; 1.978 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5279 ; 0.941 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 315 ; 6.295 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 94 ;31.447 ;23.404 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 372 ;13.743 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;18.302 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 394 ; 0.251 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2673 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 511 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1215 ; 2.657 ; 2.677 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1214 ; 2.656 ; 2.676 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1518 ; 3.591 ; 3.988 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1519 ; 3.590 ; 3.989 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1128 ; 3.648 ; 3.093 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1128 ; 3.648 ; 3.093 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1685 ; 5.295 ; 4.482 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2554 ; 7.243 ;22.435 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2482 ; 7.106 ;21.913 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 9 A 3000 REMARK 3 ORIGIN FOR THE GROUP (A): 8.6638 19.9934 45.4654 REMARK 3 T TENSOR REMARK 3 T11: 0.0542 T22: 0.0103 REMARK 3 T33: 0.0186 T12: -0.0054 REMARK 3 T13: -0.0107 T23: 0.0104 REMARK 3 L TENSOR REMARK 3 L11: 0.1012 L22: 0.5550 REMARK 3 L33: 0.5690 L12: 0.0427 REMARK 3 L13: -0.1306 L23: -0.3785 REMARK 3 S TENSOR REMARK 3 S11: 0.0031 S12: 0.0082 S13: 0.0256 REMARK 3 S21: -0.0657 S22: -0.0360 S23: -0.0302 REMARK 3 S31: -0.0315 S32: 0.0303 S33: 0.0330 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5FHT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-DEC-15. REMARK 100 THE DEPOSITION ID IS D_1000216248. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-DEC-12 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25396 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 14.570 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.11600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.40500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: POLY-ALANINE MODEL OF 1LCY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MES, NACL, KH2PO4, NAH2PO4, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 43.00500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 24.82895 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 42.23333 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 43.00500 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 24.82895 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 42.23333 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 43.00500 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 24.82895 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 42.23333 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 49.65790 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 84.46667 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 49.65790 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 84.46667 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 49.65790 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 84.46667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 697 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 ALA A 1 REMARK 465 VAL A 2 REMARK 465 PRO A 3 REMARK 465 SER A 4 REMARK 465 PRO A 5 REMARK 465 PRO A 6 REMARK 465 PRO A 7 REMARK 465 ALA A 8 REMARK 465 PRO A 148 REMARK 465 ALA A 149 REMARK 465 ARG A 150 REMARK 465 ASP A 151 REMARK 465 LEU A 152 REMARK 465 GLY A 153 REMARK 465 GLY A 212 REMARK 465 GLU A 213 REMARK 465 LYS A 214 REMARK 465 LYS A 215 REMARK 465 ASN A 216 REMARK 465 SER A 217 REMARK 465 SER A 218 REMARK 465 SER A 219 REMARK 465 GLY A 220 REMARK 465 ILE A 221 REMARK 465 SER A 222 REMARK 465 GLY A 223 REMARK 465 SER A 224 REMARK 465 HIS A 328 REMARK 465 HIS A 329 REMARK 465 HIS A 330 REMARK 465 HIS A 331 REMARK 465 HIS A 332 REMARK 465 HIS A 333 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 36 CD NE CZ NH1 NH2 REMARK 470 GLU A 43 CD OE1 OE2 REMARK 470 ARG A 74 CD NE CZ NH1 NH2 REMARK 470 LYS A 104 CG CD CE NZ REMARK 470 GLU A 105 CD OE1 OE2 REMARK 470 ARG A 147 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 154 CB CG CD1 CD2 REMARK 470 GLN A 156 CG CD OE1 NE2 REMARK 470 ARG A 211 CG CD NE CZ NH1 NH2 REMARK 470 SER A 250 OG REMARK 470 GLU A 285 CG CD OE1 OE2 REMARK 470 GLN A 286 CG CD OE1 NE2 REMARK 470 MET A 287 CE REMARK 470 ARG A 312 CD NE CZ NH1 NH2 REMARK 470 GLU A 313 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 573 O HOH A 594 1.80 REMARK 500 O HOH A 665 O HOH A 676 1.86 REMARK 500 O HOH A 655 O HOH A 659 1.88 REMARK 500 O HOH A 576 O HOH A 627 2.02 REMARK 500 O HOH A 547 O HOH A 686 2.06 REMARK 500 O HOH A 505 O HOH A 679 2.06 REMARK 500 O HOH A 513 O HOH A 521 2.10 REMARK 500 O HOH A 570 O HOH A 645 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 667 O HOH A 687 9554 1.84 REMARK 500 O HOH A 537 O HOH A 687 9554 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 57 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG A 204 NE - CZ - NH1 ANGL. DEV. = 4.7 DEGREES REMARK 500 ARG A 204 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 226 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 68 -132.40 56.01 REMARK 500 LEU A 133 -74.87 72.98 REMARK 500 THR A 189 -53.05 -123.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 404 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 169 OD1 REMARK 620 2 HOH A 562 O 81.8 REMARK 620 3 HOH A 632 O 122.0 154.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 403 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 235 OG1 REMARK 620 2 HOH A 550 O 84.2 REMARK 620 3 HOH A 578 O 83.9 128.8 REMARK 620 4 HOH A 606 O 69.7 83.6 136.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MES A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 404 DBREF 5FHT A 1 325 UNP O43464 HTRA2_HUMAN 134 458 SEQADV 5FHT MET A 0 UNP O43464 INITIATING METHIONINE SEQADV 5FHT LYS A 93 UNP O43464 VAL 226 ENGINEERED MUTATION SEQADV 5FHT ALA A 173 UNP O43464 SER 306 ENGINEERED MUTATION SEQADV 5FHT LEU A 326 UNP O43464 EXPRESSION TAG SEQADV 5FHT GLU A 327 UNP O43464 EXPRESSION TAG SEQADV 5FHT HIS A 328 UNP O43464 EXPRESSION TAG SEQADV 5FHT HIS A 329 UNP O43464 EXPRESSION TAG SEQADV 5FHT HIS A 330 UNP O43464 EXPRESSION TAG SEQADV 5FHT HIS A 331 UNP O43464 EXPRESSION TAG SEQADV 5FHT HIS A 332 UNP O43464 EXPRESSION TAG SEQADV 5FHT HIS A 333 UNP O43464 EXPRESSION TAG SEQRES 1 A 334 MET ALA VAL PRO SER PRO PRO PRO ALA SER PRO ARG SER SEQRES 2 A 334 GLN TYR ASN PHE ILE ALA ASP VAL VAL GLU LYS THR ALA SEQRES 3 A 334 PRO ALA VAL VAL TYR ILE GLU ILE LEU ASP ARG HIS PRO SEQRES 4 A 334 PHE LEU GLY ARG GLU VAL PRO ILE SER ASN GLY SER GLY SEQRES 5 A 334 PHE VAL VAL ALA ALA ASP GLY LEU ILE VAL THR ASN ALA SEQRES 6 A 334 HIS VAL VAL ALA ASP ARG ARG ARG VAL ARG VAL ARG LEU SEQRES 7 A 334 LEU SER GLY ASP THR TYR GLU ALA VAL VAL THR ALA VAL SEQRES 8 A 334 ASP PRO LYS ALA ASP ILE ALA THR LEU ARG ILE GLN THR SEQRES 9 A 334 LYS GLU PRO LEU PRO THR LEU PRO LEU GLY ARG SER ALA SEQRES 10 A 334 ASP VAL ARG GLN GLY GLU PHE VAL VAL ALA MET GLY SER SEQRES 11 A 334 PRO PHE ALA LEU GLN ASN THR ILE THR SER GLY ILE VAL SEQRES 12 A 334 SER SER ALA GLN ARG PRO ALA ARG ASP LEU GLY LEU PRO SEQRES 13 A 334 GLN THR ASN VAL GLU TYR ILE GLN THR ASP ALA ALA ILE SEQRES 14 A 334 ASP PHE GLY ASN ALA GLY GLY PRO LEU VAL ASN LEU ASP SEQRES 15 A 334 GLY GLU VAL ILE GLY VAL ASN THR MET LYS VAL THR ALA SEQRES 16 A 334 GLY ILE SER PHE ALA ILE PRO SER ASP ARG LEU ARG GLU SEQRES 17 A 334 PHE LEU HIS ARG GLY GLU LYS LYS ASN SER SER SER GLY SEQRES 18 A 334 ILE SER GLY SER GLN ARG ARG TYR ILE GLY VAL MET MET SEQRES 19 A 334 LEU THR LEU SER PRO SER ILE LEU ALA GLU LEU GLN LEU SEQRES 20 A 334 ARG GLU PRO SER PHE PRO ASP VAL GLN HIS GLY VAL LEU SEQRES 21 A 334 ILE HIS LYS VAL ILE LEU GLY SER PRO ALA HIS ARG ALA SEQRES 22 A 334 GLY LEU ARG PRO GLY ASP VAL ILE LEU ALA ILE GLY GLU SEQRES 23 A 334 GLN MET VAL GLN ASN ALA GLU ASP VAL TYR GLU ALA VAL SEQRES 24 A 334 ARG THR GLN SER GLN LEU ALA VAL GLN ILE ARG ARG GLY SEQRES 25 A 334 ARG GLU THR LEU THR LEU TYR VAL THR PRO GLU VAL THR SEQRES 26 A 334 GLU LEU GLU HIS HIS HIS HIS HIS HIS HET MES A 401 12 HET CL A 402 1 HET K A 403 1 HET NA A 404 1 HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETNAM CL CHLORIDE ION HETNAM K POTASSIUM ION HETNAM NA SODIUM ION FORMUL 2 MES C6 H13 N O4 S FORMUL 3 CL CL 1- FORMUL 4 K K 1+ FORMUL 5 NA NA 1+ FORMUL 6 HOH *200(H2 O) HELIX 1 AA1 SER A 9 ASN A 15 1 7 HELIX 2 AA2 ASN A 15 ALA A 25 1 11 HELIX 3 AA3 ASN A 63 ALA A 68 1 6 HELIX 4 AA4 ARG A 114 VAL A 118 5 5 HELIX 5 AA5 SER A 202 ARG A 211 1 10 HELIX 6 AA6 SER A 237 GLU A 248 1 12 HELIX 7 AA7 SER A 267 GLY A 273 1 7 HELIX 8 AA8 ASN A 290 GLN A 301 1 12 SHEET 1 AA1 7 VAL A 28 HIS A 37 0 SHEET 2 AA1 7 ARG A 42 ALA A 55 -1 O VAL A 44 N ASP A 35 SHEET 3 AA1 7 LEU A 59 THR A 62 -1 O LEU A 59 N VAL A 54 SHEET 4 AA1 7 ILE A 96 ARG A 100 -1 O LEU A 99 N ILE A 60 SHEET 5 AA1 7 THR A 82 ASP A 91 -1 N ASP A 91 O ILE A 96 SHEET 6 AA1 7 ARG A 72 ARG A 76 -1 N VAL A 75 O TYR A 83 SHEET 7 AA1 7 VAL A 28 HIS A 37 -1 N GLU A 32 O ARG A 74 SHEET 1 AA2 6 THR A 138 ILE A 141 0 SHEET 2 AA2 6 PHE A 123 ALA A 126 -1 N ALA A 126 O THR A 138 SHEET 3 AA2 6 PRO A 176 ASN A 179 -1 O VAL A 178 N VAL A 125 SHEET 4 AA2 6 VAL A 184 THR A 193 -1 O ILE A 185 N LEU A 177 SHEET 5 AA2 6 ILE A 196 PRO A 201 -1 O PHE A 198 N MET A 190 SHEET 6 AA2 6 ILE A 162 THR A 164 -1 N ILE A 162 O ALA A 199 SHEET 1 AA3 2 ARG A 226 TYR A 228 0 SHEET 2 AA3 2 GLU A 322 THR A 324 -1 O GLU A 322 N TYR A 228 SHEET 1 AA4 4 VAL A 231 THR A 235 0 SHEET 2 AA4 4 VAL A 258 VAL A 263 -1 O HIS A 261 N MET A 232 SHEET 3 AA4 4 VAL A 279 ILE A 283 -1 O ILE A 280 N VAL A 258 SHEET 4 AA4 4 GLN A 286 MET A 287 -1 O GLN A 286 N ILE A 283 SHEET 1 AA5 5 VAL A 231 THR A 235 0 SHEET 2 AA5 5 VAL A 258 VAL A 263 -1 O HIS A 261 N MET A 232 SHEET 3 AA5 5 VAL A 279 ILE A 283 -1 O ILE A 280 N VAL A 258 SHEET 4 AA5 5 LEU A 304 ARG A 310 -1 O GLN A 307 N LEU A 281 SHEET 5 AA5 5 GLU A 313 VAL A 319 -1 O VAL A 319 N LEU A 304 LINK OD1 ASP A 169 NA NA A 404 1555 1555 2.59 LINK OG1 THR A 235 K K A 403 1555 1555 2.95 LINK K K A 403 O HOH A 550 1555 1555 3.17 LINK K K A 403 O HOH A 578 1555 1555 3.05 LINK K K A 403 O HOH A 606 1555 1555 3.03 LINK NA NA A 404 O HOH A 562 1555 1555 2.66 LINK NA NA A 404 O HOH A 632 1555 1555 2.96 SITE 1 AC1 11 ARG A 11 SER A 12 GLN A 13 TYR A 14 SITE 2 AC1 11 ASN A 15 ASP A 19 HIS A 37 PRO A 38 SITE 3 AC1 11 PHE A 39 LEU A 40 ARG A 119 SITE 1 AC2 4 GLU A 160 PRO A 201 ARG A 204 HOH A 678 SITE 1 AC3 4 VAL A 159 THR A 235 HOH A 578 HOH A 606 SITE 1 AC4 3 ASP A 169 HOH A 562 HOH A 632 CRYST1 86.010 86.010 126.700 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011627 0.006713 0.000000 0.00000 SCALE2 0.000000 0.013425 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007893 0.00000