PDB Short entry for 5FWW HEADER SIGNALING PROTEIN 21-FEB-16 5FWW TITLE WNT MODULATOR KREMEN IN COMPLEX WITH DKK1 (CRD2) AND LRP6 (PE3PE4) COMPND MOL_ID: 1; COMPND 2 MOLECULE: LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN 6; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PE3PE4, RESIDUES 630-1246; COMPND 5 SYNONYM: LRP-6; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: KREMEN PROTEIN 1; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: ECD, RESIDUES 30-322; COMPND 11 SYNONYM: DICKKOPF RECEPTOR, KRINGLE DOMAIN-CONTAINING TRANSMEMBRANE COMPND 12 PROTEIN 1, KRINGLE-CONTAINING PROTEIN MARKING THE EYE AND THE COMPND 13 NOSE; COMPND 14 ENGINEERED: YES; COMPND 15 MOL_ID: 3; COMPND 16 MOLECULE: DICKKOPF-RELATED PROTEIN 1; COMPND 17 CHAIN: C; COMPND 18 FRAGMENT: CRD2, RESIDUES 182-266; COMPND 19 SYNONYM: HDKK-1, SK; COMPND 20 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: LRP6; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: HEK293; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PHLSEC; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PHLSEC; SOURCE 12 MOL_ID: 2; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606; SOURCE 16 GENE: KREMEN1, KREMEN, KRM1; SOURCE 17 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 18 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 20 EXPRESSION_SYSTEM_CELL_LINE: HEK293; SOURCE 21 EXPRESSION_SYSTEM_VECTOR: PHLSEC; SOURCE 22 EXPRESSION_SYSTEM_PLASMID: PHLSEC; SOURCE 23 MOL_ID: 3; SOURCE 24 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 25 ORGANISM_COMMON: HUMAN; SOURCE 26 ORGANISM_TAXID: 9606; SOURCE 27 GENE: DKK1, UNQ492/PRO1008; SOURCE 28 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 29 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 30 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 31 EXPRESSION_SYSTEM_CELL_LINE: HEK293; SOURCE 32 EXPRESSION_SYSTEM_PLASMID: PHLSEC KEYWDS SIGNALING PROTEIN, WNT, CELL SURFACE, SIGNALLING, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.ZEBISCH,V.A.JACKSON,E.Y.JONES REVDAT 3 28-SEP-16 5FWW 1 JRNL REVDAT 2 24-AUG-16 5FWW 1 JRNL REVDAT 1 20-JUL-16 5FWW 0 JRNL AUTH M.ZEBISCH,V.A.JACKSON,Y.ZHAO,E.Y.JONES JRNL TITL STRUCTURE OF THE DUAL-MODE WNT REGULATOR KREMEN1 AND JRNL TITL 2 INSIGHT INTO TERNARY COMPLEX FORMATION WITH LRP6 AND JRNL TITL 3 DICKKOPF JRNL REF STRUCTURE V. 24 1599 2016 JRNL REFN ISSN 0969-2126 JRNL PMID 27524201 JRNL DOI 10.1016/J.STR.2016.06.020 REMARK 2 REMARK 2 RESOLUTION. 3.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU, REMARK 3 STEINER,NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 135.36 REMARK 3 DATA CUTOFF (SIGMA(F)) : NONE REMARK 3 COMPLETENESS FOR RANGE (%) : 52.69 REMARK 3 NUMBER OF REFLECTIONS : 7644 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.32284 REMARK 3 R VALUE (WORKING SET) : 0.32128 REMARK 3 FREE R VALUE : 0.35528 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.8 REMARK 3 FREE R VALUE TEST SET COUNT : 388 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.505 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.595 REMARK 3 REFLECTION IN BIN (WORKING SET) : 34 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 3.36 REMARK 3 BIN R VALUE (WORKING SET) : 0.433 REMARK 3 BIN FREE R VALUE SET COUNT : 2 REMARK 3 BIN FREE R VALUE : 0.382 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7729 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.615 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -15.63 REMARK 3 B22 (A**2) : 32.79 REMARK 3 B33 (A**2) : -17.17 REMARK 3 B12 (A**2) : 0.00 REMARK 3 B13 (A**2) : 0.00 REMARK 3 B23 (A**2) : 0.00 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 1.576 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.763 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.701 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7934 ; 0.006 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 7294 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10764 ; 0.998 ; 1.938 REMARK 3 BOND ANGLES OTHERS (DEGREES): 16754 ; 3.790 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 970 ; 5.033 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 390 ;31.872 ;23.487 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1295 ;12.941 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 64 ;11.533 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1140 ; 0.061 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 9085 ; 0.003 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1947 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3898 ; 1.285 ; 5.860 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3897 ; 1.284 ; 5.860 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4862 ; 2.316 ; 8.787 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 4036 ; 0.981 ; 5.903 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. REMARK 4 REMARK 4 5FWW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-FEB-16. REMARK 100 THE PDBE ID CODE IS EBI-66263. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-SEP-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL (PILATUS) REMARK 200 DETECTOR MANUFACTURER : DECTRIS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8070 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.50 REMARK 200 RESOLUTION RANGE LOW (A) : 67.68 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 51.6 REMARK 200 DATA REDUNDANCY : 3.9 REMARK 200 R MERGE (I) : 0.37 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 4.60 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.3 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.1 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20 %W/V PEG3350 0.2 M REMARK 280 NA/K-PHOSPHATE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 135.36400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 135.36400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 43.46650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.04000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 43.46650 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.04000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 135.36400 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 43.46650 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 50.04000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 135.36400 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 43.46650 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 50.04000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1006 REMARK 465 VAL A 1007 REMARK 465 PRO A 1008 REMARK 465 SER A 1009 REMARK 465 GLN A 1010 REMARK 465 ASN A 1011 REMARK 465 LEU A 1012 REMARK 465 ALA B 98 REMARK 465 GLU B 99 REMARK 465 HIS B 100 REMARK 465 GLU B 101 REMARK 465 ASP B 102 REMARK 465 ASP C 250 REMARK 465 HIS C 251 REMARK 465 HIS C 252 REMARK 465 GLN C 253 REMARK 465 ALA C 254 REMARK 465 SER C 255 REMARK 465 ASN C 256 REMARK 465 SER C 257 REMARK 465 SER C 258 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 639 -89.16 55.44 REMARK 500 SER A 665 -79.96 -119.07 REMARK 500 GLU A 701 34.89 -150.60 REMARK 500 TRP A 744 -41.65 -137.44 REMARK 500 SER A 749 74.93 64.71 REMARK 500 ARG A 751 -88.15 -83.60 REMARK 500 ASP A 756 71.75 -155.69 REMARK 500 TRP A 767 51.81 -115.75 REMARK 500 ARG A 803 72.02 59.42 REMARK 500 HIS A 834 71.23 -158.11 REMARK 500 PHE A 836 -76.69 -124.54 REMARK 500 GLN A 842 -96.26 59.04 REMARK 500 GLN A 864 -169.49 -116.95 REMARK 500 GLN A 887 72.20 -100.52 REMARK 500 HIS A 902 -74.27 -124.47 REMARK 500 HIS A 919 -17.94 79.02 REMARK 500 ARG A 927 -65.33 -139.52 REMARK 500 GLN A 940 -166.16 -101.15 REMARK 500 ASN A 987 73.06 59.56 REMARK 500 ARG A1060 -79.63 -126.64 REMARK 500 ARG A1079 -32.46 80.00 REMARK 500 SER A1102 -55.55 -146.64 REMARK 500 PRO A1104 97.29 -63.81 REMARK 500 ARG A1124 64.18 61.24 REMARK 500 ASP A1141 35.17 -143.27 REMARK 500 LEU A1145 -53.96 -121.97 REMARK 500 GLU A1154 -93.29 60.15 REMARK 500 HIS A1216 -110.26 -109.43 REMARK 500 LEU A1241 -59.78 -143.37 REMARK 500 GLU B 60 32.32 -146.99 REMARK 500 THR B 61 56.74 -114.08 REMARK 500 ASN B 119 98.44 -67.58 REMARK 500 ASP B 174 54.06 -105.07 REMARK 500 PHE B 259 86.42 -154.37 REMARK 500 SER B 286 85.14 -154.60 REMARK 500 PHE B 298 95.09 -166.53 REMARK 500 ILE B 308 -70.55 -128.56 REMARK 500 PHE C 205 -104.86 61.12 REMARK 500 ARG C 224 -75.87 -71.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1323 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 305 OG REMARK 620 2 ASN B 309 O 134.3 REMARK 620 3 ASP B 306 O 74.0 146.1 REMARK 620 4 ASP B 266 OD1 78.4 106.5 96.5 REMARK 620 5 ASP B 306 OD1 122.1 97.6 72.0 60.9 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B1323 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5FWS RELATED DB: PDB REMARK 900 STRUCTURE OF A WNT REGULATOR REMARK 900 RELATED ID: 5FWT RELATED DB: PDB REMARK 900 STRUCTURE OF A WNT REGULATOR REMARK 900 RELATED ID: 5FWU RELATED DB: PDB REMARK 900 STRUCTURE OF A WNT REGULATOR REMARK 900 RELATED ID: 5FWV RELATED DB: PDB REMARK 900 STRUCTURE OF A WNT REGULATOR DBREF 5FWW A 630 1246 UNP O75581 LRP6_HUMAN 630 1246 DBREF 5FWW B 30 322 UNP Q96MU8 KREM1_HUMAN 30 322 DBREF 5FWW C 182 266 UNP O94907 DKK1_HUMAN 182 266 SEQADV 5FWW ALA A 628 UNP O75581 EXPRESSION TAG SEQADV 5FWW ASP A 629 UNP O75581 EXPRESSION TAG SEQADV 5FWW ILE A 1062 UNP O75581 VAL 1062 CONFLICT SEQRES 1 A 619 ALA ASP PRO GLU ALA PHE LEU LEU PHE SER ARG ARG ALA SEQRES 2 A 619 ASP ILE ARG ARG ILE SER LEU GLU THR ASN ASN ASN ASN SEQRES 3 A 619 VAL ALA ILE PRO LEU THR GLY VAL LYS GLU ALA SER ALA SEQRES 4 A 619 LEU ASP PHE ASP VAL THR ASP ASN ARG ILE TYR TRP THR SEQRES 5 A 619 ASP ILE SER LEU LYS THR ILE SER ARG ALA PHE MET ASN SEQRES 6 A 619 GLY SER ALA LEU GLU HIS VAL VAL GLU PHE GLY LEU ASP SEQRES 7 A 619 TYR PRO GLU GLY MET ALA VAL ASP TRP LEU GLY LYS ASN SEQRES 8 A 619 LEU TYR TRP ALA ASP THR GLY THR ASN ARG ILE GLU VAL SEQRES 9 A 619 SER LYS LEU ASP GLY GLN HIS ARG GLN VAL LEU VAL TRP SEQRES 10 A 619 LYS ASP LEU ASP SER PRO ARG ALA LEU ALA LEU ASP PRO SEQRES 11 A 619 ALA GLU GLY PHE MET TYR TRP THR GLU TRP GLY GLY LYS SEQRES 12 A 619 PRO LYS ILE ASP ARG ALA ALA MET ASP GLY SER GLU ARG SEQRES 13 A 619 THR THR LEU VAL PRO ASN VAL GLY ARG ALA ASN GLY LEU SEQRES 14 A 619 THR ILE ASP TYR ALA LYS ARG ARG LEU TYR TRP THR ASP SEQRES 15 A 619 LEU ASP THR ASN LEU ILE GLU SER SER ASN MET LEU GLY SEQRES 16 A 619 LEU ASN ARG GLU VAL ILE ALA ASP ASP LEU PRO HIS PRO SEQRES 17 A 619 PHE GLY LEU THR GLN TYR GLN ASP TYR ILE TYR TRP THR SEQRES 18 A 619 ASP TRP SER ARG ARG SER ILE GLU ARG ALA ASN LYS THR SEQRES 19 A 619 SER GLY GLN ASN ARG THR ILE ILE GLN GLY HIS LEU ASP SEQRES 20 A 619 TYR VAL MET ASP ILE LEU VAL PHE HIS SER SER ARG GLN SEQRES 21 A 619 SER GLY TRP ASN GLU CYS ALA SER SER ASN GLY HIS CYS SEQRES 22 A 619 SER HIS LEU CYS LEU ALA VAL PRO VAL GLY GLY PHE VAL SEQRES 23 A 619 CYS GLY CYS PRO ALA HIS TYR SER LEU ASN ALA ASP ASN SEQRES 24 A 619 ARG THR CYS SER ALA PRO THR THR PHE LEU LEU PHE SER SEQRES 25 A 619 GLN LYS SER ALA ILE ASN ARG MET VAL ILE ASP GLU GLN SEQRES 26 A 619 GLN SER PRO ASP ILE ILE LEU PRO ILE HIS SER LEU ARG SEQRES 27 A 619 ASN VAL ARG ALA ILE ASP TYR ASP PRO LEU ASP LYS GLN SEQRES 28 A 619 LEU TYR TRP ILE ASP SER ARG GLN ASN MET ILE ARG LYS SEQRES 29 A 619 ALA GLN GLU ASP GLY SER GLN GLY PHE THR VAL VAL VAL SEQRES 30 A 619 SER SER VAL PRO SER GLN ASN LEU GLU ILE GLN PRO TYR SEQRES 31 A 619 ASP LEU SER ILE ASP ILE TYR SER ARG TYR ILE TYR TRP SEQRES 32 A 619 THR CYS GLU ALA THR ASN VAL ILE ASN VAL THR ARG LEU SEQRES 33 A 619 ASP GLY ARG SER VAL GLY VAL VAL LEU LYS GLY GLU GLN SEQRES 34 A 619 ASP ARG PRO ARG ALA ILE VAL VAL ASN PRO GLU LYS GLY SEQRES 35 A 619 TYR MET TYR PHE THR ASN LEU GLN GLU ARG SER PRO LYS SEQRES 36 A 619 ILE GLU ARG ALA ALA LEU ASP GLY THR GLU ARG GLU VAL SEQRES 37 A 619 LEU PHE PHE SER GLY LEU SER LYS PRO ILE ALA LEU ALA SEQRES 38 A 619 LEU ASP SER ARG LEU GLY LYS LEU PHE TRP ALA ASP SER SEQRES 39 A 619 ASP LEU ARG ARG ILE GLU SER SER ASP LEU SER GLY ALA SEQRES 40 A 619 ASN ARG ILE VAL LEU GLU ASP SER ASN ILE LEU GLN PRO SEQRES 41 A 619 VAL GLY LEU THR VAL PHE GLU ASN TRP LEU TYR TRP ILE SEQRES 42 A 619 ASP LYS GLN GLN GLN MET ILE GLU LYS ILE ASP MET THR SEQRES 43 A 619 GLY ARG GLU GLY ARG THR LYS VAL GLN ALA ARG ILE ALA SEQRES 44 A 619 GLN LEU SER ASP ILE HIS ALA VAL LYS GLU LEU ASN LEU SEQRES 45 A 619 GLN GLU TYR ARG GLN HIS PRO CYS ALA GLN ASP ASN GLY SEQRES 46 A 619 GLY CYS SER HIS ILE CYS LEU VAL LYS GLY ASP GLY THR SEQRES 47 A 619 THR ARG CYS SER CYS PRO MET HIS LEU VAL LEU LEU GLN SEQRES 48 A 619 ASP GLU LEU SER CYS GLY GLU PRO SEQRES 1 B 293 PRO GLU CYS PHE THR ALA ASN GLY ALA ASP TYR ARG GLY SEQRES 2 B 293 THR GLN ASN TRP THR ALA LEU GLN GLY GLY LYS PRO CYS SEQRES 3 B 293 LEU PHE TRP ASN GLU THR PHE GLN HIS PRO TYR ASN THR SEQRES 4 B 293 LEU LYS TYR PRO ASN GLY GLU GLY GLY LEU GLY GLU HIS SEQRES 5 B 293 ASN TYR CYS ARG ASN PRO ASP GLY ASP VAL SER PRO TRP SEQRES 6 B 293 CYS TYR VAL ALA GLU HIS GLU ASP GLY VAL TYR TRP LYS SEQRES 7 B 293 TYR CYS GLU ILE PRO ALA CYS GLN MET PRO GLY ASN LEU SEQRES 8 B 293 GLY CYS TYR LYS ASP HIS GLY ASN PRO PRO PRO LEU THR SEQRES 9 B 293 GLY THR SER LYS THR SER ASN LYS LEU THR ILE GLN THR SEQRES 10 B 293 CYS ILE SER PHE CYS ARG SER GLN ARG PHE LYS PHE ALA SEQRES 11 B 293 GLY MET GLU SER GLY TYR ALA CYS PHE CYS GLY ASN ASN SEQRES 12 B 293 PRO ASP TYR TRP LYS TYR GLY GLU ALA ALA SER THR GLU SEQRES 13 B 293 CYS ASN SER VAL CYS PHE GLY ASP HIS THR GLN PRO CYS SEQRES 14 B 293 GLY GLY ASP GLY ARG ILE ILE LEU PHE ASP THR LEU VAL SEQRES 15 B 293 GLY ALA CYS GLY GLY ASN TYR SER ALA MET SER SER VAL SEQRES 16 B 293 VAL TYR SER PRO ASP PHE PRO ASP THR TYR ALA THR GLY SEQRES 17 B 293 ARG VAL CYS TYR TRP THR ILE ARG VAL PRO GLY ALA SER SEQRES 18 B 293 HIS ILE HIS PHE SER PHE PRO LEU PHE ASP ILE ARG ASP SEQRES 19 B 293 SER ALA ASP MET VAL GLU LEU LEU ASP GLY TYR THR HIS SEQRES 20 B 293 ARG VAL LEU ALA ARG PHE HIS GLY ARG SER ARG PRO PRO SEQRES 21 B 293 LEU SER PHE ASN VAL SER LEU ASP PHE VAL ILE LEU TYR SEQRES 22 B 293 PHE PHE SER ASP ARG ILE ASN GLN ALA GLN GLY PHE ALA SEQRES 23 B 293 VAL LEU TYR GLN ALA VAL LYS SEQRES 1 C 85 LYS GLY GLN GLU GLY SER VAL CYS LEU ARG SER SER ASP SEQRES 2 C 85 CYS ALA SER GLY LEU CYS CYS ALA ARG HIS PHE TRP SER SEQRES 3 C 85 LYS ILE CYS LYS PRO VAL LEU LYS GLU GLY GLN VAL CYS SEQRES 4 C 85 THR LYS HIS ARG ARG LYS GLY SER HIS GLY LEU GLU ILE SEQRES 5 C 85 PHE GLN ARG CYS TYR CYS GLY GLU GLY LEU SER CYS ARG SEQRES 6 C 85 ILE GLN LYS ASP HIS HIS GLN ALA SER ASN SER SER ARG SEQRES 7 C 85 LEU HIS THR CYS GLN ARG HIS HET CA B1323 1 HETNAM CA CALCIUM ION FORMUL 4 CA CA 2+ HELIX 1 1 ASN A 891 SER A 895 5 5 HELIX 2 2 SER A 895 CYS A 900 5 6 HELIX 3 3 ASN A 1198 GLN A 1204 1 7 HELIX 4 4 GLN A 1209 CYS A 1214 5 6 HELIX 5 5 PHE B 57 THR B 61 5 5 HELIX 6 6 GLY B 74 LEU B 78 5 5 HELIX 7 7 THR B 143 GLN B 154 1 12 HELIX 8 8 ALA B 182 CYS B 186 5 5 HELIX 9 9 LYS C 226 GLU C 232 1 7 SHEET 1 AA 4 ASN A 653 ALA A 655 0 SHEET 2 AA 4 ASP A 641 ILE A 645 -1 O ARG A 644 N VAL A 654 SHEET 3 AA 4 PHE A 633 ARG A 638 -1 O LEU A 634 N ILE A 645 SHEET 4 AA 4 ILE A 879 PHE A 882 -1 O LEU A 880 N LEU A 635 SHEET 1 AB 4 ALA A 664 ASP A 670 0 SHEET 2 AB 4 ARG A 675 ASP A 680 -1 O ARG A 675 N ASP A 670 SHEET 3 AB 4 THR A 685 PHE A 690 -1 O THR A 685 N ASP A 680 SHEET 4 AB 4 GLU A 697 VAL A 700 -1 O GLU A 697 N ARG A 688 SHEET 1 AC 4 GLY A 709 ASP A 713 0 SHEET 2 AC 4 ASN A 718 ASP A 723 -1 O ASN A 718 N ASP A 713 SHEET 3 AC 4 ARG A 728 LYS A 733 -1 O ARG A 728 N ASP A 723 SHEET 4 AC 4 GLN A 740 VAL A 743 -1 O GLN A 740 N VAL A 731 SHEET 1 AD 4 PRO A 750 ASP A 756 0 SHEET 2 AD 4 PHE A 761 GLU A 766 -1 O PHE A 761 N ASP A 756 SHEET 3 AD 4 LYS A 772 ALA A 777 -1 O LYS A 772 N GLU A 766 SHEET 4 AD 4 THR A 784 VAL A 787 -1 O THR A 784 N ARG A 775 SHEET 1 AE 4 ALA A 793 ASP A 799 0 SHEET 2 AE 4 ARG A 804 ASP A 809 -1 O ARG A 804 N ASP A 799 SHEET 3 AE 4 LEU A 814 ASN A 819 -1 O LEU A 814 N ASP A 809 SHEET 4 AE 4 GLU A 826 ALA A 829 -1 O GLU A 826 N SER A 817 SHEET 1 AF 4 PRO A 835 TYR A 841 0 SHEET 2 AF 4 TYR A 844 ASP A 849 -1 O TYR A 844 N TYR A 841 SHEET 3 AF 4 SER A 854 ASN A 859 -1 O SER A 854 N ASP A 849 SHEET 4 AF 4 THR A 867 GLY A 871 -1 O THR A 867 N ARG A 857 SHEET 1 AG 2 LEU A 903 ALA A 906 0 SHEET 2 AG 2 PHE A 912 GLY A 915 -1 O VAL A 913 N LEU A 905 SHEET 1 AH 2 SER A 921 LEU A 922 0 SHEET 2 AH 2 CYS A 929 SER A 930 -1 O SER A 930 N SER A 921 SHEET 1 AI 4 ILE A 957 ILE A 958 0 SHEET 2 AI 4 ILE A 944 MET A 947 -1 O ARG A 946 N ILE A 957 SHEET 3 AI 4 PHE A 935 SER A 939 -1 O LEU A 936 N MET A 947 SHEET 4 AI 4 ASP A1190 VAL A1194 -1 O ASP A1190 N SER A 939 SHEET 1 AJ 4 VAL A 967 ASP A 973 0 SHEET 2 AJ 4 GLN A 978 ASP A 983 -1 O GLN A 978 N ASP A 973 SHEET 3 AJ 4 MET A 988 ALA A 992 -1 O MET A 988 N ASP A 983 SHEET 4 AJ 4 PHE A1000 VAL A1003 -1 O PHE A1000 N LYS A 991 SHEET 1 AK 4 PRO A1016 ASP A1022 0 SHEET 2 AK 4 TYR A1027 CYS A1032 -1 O TYR A1027 N ASP A1022 SHEET 3 AK 4 VAL A1037 ARG A1042 -1 O VAL A1037 N CYS A1032 SHEET 4 AK 4 SER A1047 LYS A1053 -1 N VAL A1048 O VAL A1040 SHEET 1 AL 4 PRO A1059 ASN A1065 0 SHEET 2 AL 4 TYR A1070 LEU A1076 -1 O TYR A1070 N ASN A1065 SHEET 3 AL 4 PRO A1081 ALA A1086 -1 O LYS A1082 N ASN A1075 SHEET 4 AL 4 GLU A1094 PHE A1097 -1 O GLU A1094 N ARG A1085 SHEET 1 AM 4 PRO A1104 ASP A1110 0 SHEET 2 AM 4 LYS A1115 ASP A1120 -1 O LYS A1115 N ASP A1110 SHEET 3 AM 4 ARG A1125 ASP A1130 -1 O ARG A1125 N ASP A1120 SHEET 4 AM 4 ILE A1137 GLU A1140 -1 O ILE A1137 N SER A1128 SHEET 1 AN 4 PRO A1147 PHE A1153 0 SHEET 2 AN 4 TRP A1156 ASP A1161 -1 O TRP A1156 N PHE A1153 SHEET 3 AN 4 MET A1166 ASP A1171 -1 O MET A1166 N ASP A1161 SHEET 4 AN 4 THR A1179 ALA A1183 -1 O THR A1179 N LYS A1169 SHEET 1 AO 2 VAL A1235 LEU A1236 0 SHEET 2 AO 2 CYS A1243 GLY A1244 -1 O GLY A1244 N VAL A1235 SHEET 1 BA 2 TRP B 94 TYR B 96 0 SHEET 2 BA 2 TRP B 106 TYR B 108 -1 O LYS B 107 N CYS B 95 SHEET 1 BB 5 ASN B 119 LYS B 124 0 SHEET 2 BB 5 ARG B 203 ASP B 208 -1 O ILE B 204 N TYR B 123 SHEET 3 BB 5 PHE B 158 GLU B 162 -1 O ALA B 159 N PHE B 207 SHEET 4 BB 5 ALA B 166 GLY B 170 -1 O ALA B 166 N GLU B 162 SHEET 5 BB 5 THR B 135 THR B 138 -1 O THR B 135 N CYS B 169 SHEET 1 BC 5 GLY B 216 TYR B 218 0 SHEET 2 BC 5 VAL B 239 ARG B 245 1 O TYR B 241 N GLY B 216 SHEET 3 BC 5 PHE B 298 PHE B 304 -1 O VAL B 299 N ILE B 244 SHEET 4 BC 5 MET B 267 ASP B 272 -1 O MET B 267 N PHE B 304 SHEET 5 BC 5 VAL B 278 HIS B 283 -1 N LEU B 279 O LEU B 270 SHEET 1 BD 4 SER B 222 TYR B 226 0 SHEET 2 BD 4 GLY B 313 VAL B 321 -1 O VAL B 316 N VAL B 225 SHEET 3 BD 4 HIS B 251 ASP B 260 -1 O HIS B 251 N VAL B 321 SHEET 4 BD 4 SER B 291 VAL B 294 -1 O PHE B 292 N PHE B 254 SHEET 1 CA 2 LEU C 199 HIS C 204 0 SHEET 2 CA 2 SER C 207 PRO C 212 -1 O SER C 207 N HIS C 204 SHEET 1 CB 3 VAL C 219 CYS C 220 0 SHEET 2 CB 3 HIS C 261 GLN C 264 -1 O HIS C 261 N CYS C 220 SHEET 3 CB 3 SER C 244 ILE C 247 -1 O SER C 244 N GLN C 264 SSBOND 1 CYS A 893 CYS A 904 1555 1555 2.03 SSBOND 2 CYS A 900 CYS A 914 1555 1555 2.03 SSBOND 3 CYS A 916 CYS A 929 1555 1555 2.03 SSBOND 4 CYS A 1207 CYS A 1218 1555 1555 2.03 SSBOND 5 CYS A 1214 CYS A 1228 1555 1555 2.03 SSBOND 6 CYS A 1230 CYS A 1243 1555 1555 2.03 SSBOND 7 CYS B 32 CYS B 114 1555 1555 2.03 SSBOND 8 CYS B 55 CYS B 95 1555 1555 2.03 SSBOND 9 CYS B 84 CYS B 109 1555 1555 2.03 SSBOND 10 CYS B 122 CYS B 186 1555 1555 2.03 SSBOND 11 CYS B 147 CYS B 167 1555 1555 2.03 SSBOND 12 CYS B 151 CYS B 169 1555 1555 2.03 SSBOND 13 CYS B 190 CYS B 198 1555 1555 2.03 SSBOND 14 CYS B 214 CYS B 240 1555 1555 2.03 SSBOND 15 CYS C 189 CYS C 201 1555 1555 2.03 SSBOND 16 CYS C 195 CYS C 210 1555 1555 2.03 SSBOND 17 CYS C 200 CYS C 237 1555 1555 2.03 SSBOND 18 CYS C 220 CYS C 245 1555 1555 2.03 SSBOND 19 CYS C 239 CYS C 263 1555 1555 2.03 LINK CA CA B1323 OG SER B 305 1555 1555 2.91 LINK CA CA B1323 O ASN B 309 1555 1555 2.56 LINK CA CA B1323 O ASP B 306 1555 1555 2.97 LINK CA CA B1323 OD1 ASP B 266 1555 1555 3.06 LINK CA CA B1323 OD1 ASP B 306 1555 1555 2.45 CISPEP 1 ASN B 128 PRO B 129 0 -5.83 CISPEP 2 PHE B 230 PRO B 231 0 10.24 SITE 1 AC1 4 ASP B 266 SER B 305 ASP B 306 ASN B 309 CRYST1 86.933 100.080 270.728 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011503 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009992 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003694 0.00000