PDB Short entry for 5G58 HEADER CALCIUM BINDING PROTEIN 22-MAY-16 5G58 TITLE CRYSTAL STRUCTURE OF A190T MUTANT OF HUMAN HIPPOCALCIN AT 2.5 A TITLE 2 RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEURON-SPECIFIC CALCIUM-BINDING PROTEIN HIPPOCALCIN; COMPND 3 CHAIN: A, E; COMPND 4 SYNONYM: CALCIUM-BINDING PROTEIN BDR-2; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HPCA, BDR2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PE-SUMO KEYWDS CALCIUM BINDING PROTEIN, CA BINDING PROTEIN, CALCIUM- BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.V.ANTONYUK,N.HELASSA,L.Y.LIAN,L.P.HAYNES,R.D.BURGOYNE REVDAT 3 08-MAY-24 5G58 1 LINK REVDAT 2 05-JUL-17 5G58 1 JRNL REVDAT 1 03-MAY-17 5G58 0 JRNL AUTH N.HELASSA,S.V.ANTONYUK,L.Y.LIAN,L.P.HAYNES,R.D.BURGOYNE JRNL TITL BIOPHYSICAL AND FUNCTIONAL CHARACTERIZATION OF HIPPOCALCIN JRNL TITL 2 MUTANTS RESPONSIBLE FOR HUMAN DYSTONIA. JRNL REF HUM. MOL. GENET. V. 26 2426 2017 JRNL REFN ESSN 1460-2083 JRNL PMID 28398555 JRNL DOI 10.1093/HMG/DDX133 REMARK 2 REMARK 2 RESOLUTION. 2.54 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.54 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.87 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 12828 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 676 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.54 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.60 REMARK 3 REFLECTION IN BIN (WORKING SET) : 899 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.54 REMARK 3 BIN R VALUE (WORKING SET) : 0.3750 REMARK 3 BIN FREE R VALUE SET COUNT : 47 REMARK 3 BIN FREE R VALUE : 0.3970 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2998 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 34 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 56.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 70.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.37000 REMARK 3 B22 (A**2) : -0.37000 REMARK 3 B33 (A**2) : 1.21000 REMARK 3 B12 (A**2) : -0.19000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.180 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.310 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.311 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 31.237 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3058 ; 0.012 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2855 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4112 ; 1.546 ; 1.968 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6603 ; 1.353 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 366 ; 6.322 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 157 ;33.048 ;24.395 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 571 ;18.364 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;16.090 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 437 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3432 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 702 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1470 ; 2.117 ; 5.006 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1469 ; 2.115 ; 5.005 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1834 ; 3.480 ; 7.502 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1588 ; 2.107 ; 5.258 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 6 A 190 REMARK 3 ORIGIN FOR THE GROUP (A): 1.2240 11.9620 1.2840 REMARK 3 T TENSOR REMARK 3 T11: 0.0745 T22: 0.0760 REMARK 3 T33: 0.0434 T12: 0.0641 REMARK 3 T13: -0.0372 T23: -0.0488 REMARK 3 L TENSOR REMARK 3 L11: 3.9965 L22: 2.0598 REMARK 3 L33: 3.1099 L12: -0.2089 REMARK 3 L13: 0.6089 L23: -0.1448 REMARK 3 S TENSOR REMARK 3 S11: -0.1240 S12: -0.2510 S13: 0.3341 REMARK 3 S21: -0.0071 S22: -0.0756 S23: 0.0662 REMARK 3 S31: -0.4610 S32: -0.3304 S33: 0.1996 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 6 E 190 REMARK 3 ORIGIN FOR THE GROUP (A): 6.5390 -6.1320 25.6740 REMARK 3 T TENSOR REMARK 3 T11: 0.0759 T22: 0.1095 REMARK 3 T33: 0.0804 T12: -0.0268 REMARK 3 T13: 0.0485 T23: 0.0189 REMARK 3 L TENSOR REMARK 3 L11: 1.2173 L22: 1.2157 REMARK 3 L33: 4.0532 L12: -0.5203 REMARK 3 L13: 0.0916 L23: -0.7896 REMARK 3 S TENSOR REMARK 3 S11: -0.0748 S12: 0.1590 S13: -0.1674 REMARK 3 S21: -0.0964 S22: -0.2202 S23: -0.1393 REMARK 3 S31: 0.4998 S32: -0.0343 S33: 0.2949 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. REMARK 3 U VALUES WITH TLS ADDED REMARK 4 REMARK 4 5G58 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE. REMARK 100 THE DEPOSITION ID IS D_1290066904. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JAN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : SI111 REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13592 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.540 REMARK 200 RESOLUTION RANGE LOW (A) : 43.870 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.54 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.68000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM CITRATE TRIBASIC REMARK 280 DIHYDRATE PH 5.5, 18% V/V 2-PROPANOL, 16% W/V PEG 4000 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 94.48667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 188.97333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 141.73000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 236.21667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 47.24333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 LYS A 3 REMARK 465 GLN A 4 REMARK 465 ASN A 5 REMARK 465 THR A 190 REMARK 465 SER A 191 REMARK 465 GLN A 192 REMARK 465 PHE A 193 REMARK 465 MET E 1 REMARK 465 GLY E 2 REMARK 465 LYS E 3 REMARK 465 GLN E 4 REMARK 465 ASN E 5 REMARK 465 SER E 6 REMARK 465 SER E 191 REMARK 465 GLN E 192 REMARK 465 PHE E 193 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 63 CD CE NZ REMARK 470 GLU A 142 CG CD OE1 OE2 REMARK 470 LYS E 137 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG E 154 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 109 85.93 -68.63 REMARK 500 MET A 138 156.24 66.73 REMARK 500 PRO A 139 -77.71 -68.44 REMARK 500 GLU A 140 -46.26 177.63 REMARK 500 GLU A 142 51.64 -118.98 REMARK 500 SER E 76 48.20 70.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 73 OD1 REMARK 620 2 ASN A 75 OD1 75.9 REMARK 620 3 ASP A 77 OD1 75.7 84.8 REMARK 620 4 THR A 79 O 77.5 152.9 83.3 REMARK 620 5 GLU A 84 OE1 109.0 96.9 175.2 97.0 REMARK 620 6 GLU A 84 OE2 78.6 57.9 138.9 121.6 44.6 REMARK 620 7 HOH E 311 O 173.5 104.2 110.8 102.8 64.5 95.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 203 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 109 OD1 REMARK 620 2 ASP A 111 OD1 84.8 REMARK 620 3 ASN A 113 OD1 76.9 83.2 REMARK 620 4 TYR A 115 O 83.4 158.8 77.0 REMARK 620 5 GLU A 120 OE1 113.1 123.4 151.2 77.5 REMARK 620 6 GLU A 120 OE2 98.7 72.9 156.1 126.3 52.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 202 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 157 OD1 REMARK 620 2 ASN A 159 OD1 92.0 REMARK 620 3 ASP A 161 OD1 89.1 72.6 REMARK 620 4 LYS A 163 O 80.5 142.3 70.4 REMARK 620 5 GLU A 168 OE1 109.9 134.6 143.4 81.9 REMARK 620 6 GLU A 168 OE2 80.7 98.5 166.4 116.3 49.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA E 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP E 73 OD1 REMARK 620 2 ASN E 75 OD1 72.1 REMARK 620 3 ASP E 77 OD1 72.2 80.4 REMARK 620 4 THR E 79 O 75.3 146.4 81.9 REMARK 620 5 GLU E 84 OE1 109.0 97.8 177.5 100.4 REMARK 620 6 GLU E 84 OE2 76.8 56.1 132.6 123.4 46.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA E 203 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP E 109 OD1 REMARK 620 2 ASP E 111 OD1 86.0 REMARK 620 3 ASN E 113 OD1 80.2 84.3 REMARK 620 4 TYR E 115 O 85.6 162.1 78.7 REMARK 620 5 GLU E 120 OE1 114.0 121.6 149.9 76.3 REMARK 620 6 GLU E 120 OE2 99.0 72.3 156.6 124.7 51.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA E 202 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP E 157 OD1 REMARK 620 2 ASN E 159 OD1 89.3 REMARK 620 3 ASP E 161 OD1 92.1 73.3 REMARK 620 4 LYS E 163 O 83.6 147.6 75.4 REMARK 620 5 GLU E 168 OE1 109.4 129.3 147.3 82.6 REMARK 620 6 GLU E 168 OE2 78.4 92.7 163.3 116.5 49.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA E 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA E 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA E 203 REMARK 999 REMARK 999 SEQUENCE REMARK 999 MUTATION A190T DBREF 5G58 A 1 193 UNP P84074 HPCA_HUMAN 1 193 DBREF 5G58 E 1 193 UNP P84074 HPCA_HUMAN 1 193 SEQADV 5G58 THR A 190 UNP P84074 ALA 190 ENGINEERED MUTATION SEQADV 5G58 THR E 190 UNP P84074 ALA 190 ENGINEERED MUTATION SEQRES 1 A 193 MET GLY LYS GLN ASN SER LYS LEU ARG PRO GLU MET LEU SEQRES 2 A 193 GLN ASP LEU ARG GLU ASN THR GLU PHE SER GLU LEU GLU SEQRES 3 A 193 LEU GLN GLU TRP TYR LYS GLY PHE LEU LYS ASP CYS PRO SEQRES 4 A 193 THR GLY ILE LEU ASN VAL ASP GLU PHE LYS LYS ILE TYR SEQRES 5 A 193 ALA ASN PHE PHE PRO TYR GLY ASP ALA SER LYS PHE ALA SEQRES 6 A 193 GLU HIS VAL PHE ARG THR PHE ASP THR ASN SER ASP GLY SEQRES 7 A 193 THR ILE ASP PHE ARG GLU PHE ILE ILE ALA LEU SER VAL SEQRES 8 A 193 THR SER ARG GLY ARG LEU GLU GLN LYS LEU MET TRP ALA SEQRES 9 A 193 PHE SER MET TYR ASP LEU ASP GLY ASN GLY TYR ILE SER SEQRES 10 A 193 ARG GLU GLU MET LEU GLU ILE VAL GLN ALA ILE TYR LYS SEQRES 11 A 193 MET VAL SER SER VAL MET LYS MET PRO GLU ASP GLU SER SEQRES 12 A 193 THR PRO GLU LYS ARG THR GLU LYS ILE PHE ARG GLN MET SEQRES 13 A 193 ASP THR ASN ASN ASP GLY LYS LEU SER LEU GLU GLU PHE SEQRES 14 A 193 ILE ARG GLY ALA LYS SER ASP PRO SER ILE VAL ARG LEU SEQRES 15 A 193 LEU GLN CYS ASP PRO SER SER THR SER GLN PHE SEQRES 1 E 193 MET GLY LYS GLN ASN SER LYS LEU ARG PRO GLU MET LEU SEQRES 2 E 193 GLN ASP LEU ARG GLU ASN THR GLU PHE SER GLU LEU GLU SEQRES 3 E 193 LEU GLN GLU TRP TYR LYS GLY PHE LEU LYS ASP CYS PRO SEQRES 4 E 193 THR GLY ILE LEU ASN VAL ASP GLU PHE LYS LYS ILE TYR SEQRES 5 E 193 ALA ASN PHE PHE PRO TYR GLY ASP ALA SER LYS PHE ALA SEQRES 6 E 193 GLU HIS VAL PHE ARG THR PHE ASP THR ASN SER ASP GLY SEQRES 7 E 193 THR ILE ASP PHE ARG GLU PHE ILE ILE ALA LEU SER VAL SEQRES 8 E 193 THR SER ARG GLY ARG LEU GLU GLN LYS LEU MET TRP ALA SEQRES 9 E 193 PHE SER MET TYR ASP LEU ASP GLY ASN GLY TYR ILE SER SEQRES 10 E 193 ARG GLU GLU MET LEU GLU ILE VAL GLN ALA ILE TYR LYS SEQRES 11 E 193 MET VAL SER SER VAL MET LYS MET PRO GLU ASP GLU SER SEQRES 12 E 193 THR PRO GLU LYS ARG THR GLU LYS ILE PHE ARG GLN MET SEQRES 13 E 193 ASP THR ASN ASN ASP GLY LYS LEU SER LEU GLU GLU PHE SEQRES 14 E 193 ILE ARG GLY ALA LYS SER ASP PRO SER ILE VAL ARG LEU SEQRES 15 E 193 LEU GLN CYS ASP PRO SER SER THR SER GLN PHE HET CA A 201 1 HET CA A 202 1 HET CA A 203 1 HET CA E 201 1 HET CA E 202 1 HET CA E 203 1 HETNAM CA CALCIUM ION FORMUL 3 CA 6(CA 2+) FORMUL 9 HOH *34(H2 O) HELIX 1 1 ARG A 9 THR A 20 1 12 HELIX 2 2 SER A 23 CYS A 38 1 16 HELIX 3 3 ASN A 44 ASN A 54 1 11 HELIX 4 4 PRO A 57 ASP A 73 1 17 HELIX 5 5 ASP A 81 GLY A 95 1 15 HELIX 6 6 ARG A 96 ASP A 109 1 14 HELIX 7 7 ARG A 118 SER A 133 1 16 HELIX 8 8 THR A 144 ASP A 157 1 14 HELIX 9 9 SER A 165 LYS A 174 1 10 HELIX 10 10 ASP A 176 LEU A 183 1 8 HELIX 11 11 GLN A 184 ASP A 186 5 3 HELIX 12 12 ARG E 9 THR E 20 1 12 HELIX 13 13 SER E 23 CYS E 38 1 16 HELIX 14 14 ASN E 44 ASN E 54 1 11 HELIX 15 15 PRO E 57 ASP E 73 1 17 HELIX 16 16 ASP E 81 GLY E 95 1 15 HELIX 17 17 ARG E 96 ASP E 109 1 14 HELIX 18 18 ARG E 118 SER E 133 1 16 HELIX 19 19 THR E 144 ASP E 157 1 14 HELIX 20 20 SER E 165 LYS E 174 1 10 HELIX 21 21 ASP E 176 LEU E 183 1 8 HELIX 22 22 GLN E 184 ASP E 186 5 3 SHEET 1 AA 2 ILE A 116 SER A 117 0 SHEET 2 AA 2 LYS A 163 LEU A 164 -1 O LEU A 164 N ILE A 116 SHEET 1 EA 2 ILE E 116 SER E 117 0 SHEET 2 EA 2 LYS E 163 LEU E 164 -1 O LEU E 164 N ILE E 116 LINK OD1 ASP A 73 CA CA A 201 1555 1555 2.41 LINK OD1 ASN A 75 CA CA A 201 1555 1555 2.12 LINK OD1 ASP A 77 CA CA A 201 1555 1555 2.31 LINK O THR A 79 CA CA A 201 1555 1555 2.24 LINK OE1 GLU A 84 CA CA A 201 1555 1555 2.55 LINK OE2 GLU A 84 CA CA A 201 1555 1555 3.04 LINK OD1 ASP A 109 CA CA A 203 1555 1555 2.45 LINK OD1 ASP A 111 CA CA A 203 1555 1555 2.41 LINK OD1 ASN A 113 CA CA A 203 1555 1555 2.37 LINK O TYR A 115 CA CA A 203 1555 1555 2.35 LINK OE1 GLU A 120 CA CA A 203 1555 1555 2.40 LINK OE2 GLU A 120 CA CA A 203 1555 1555 2.55 LINK OD1 ASP A 157 CA CA A 202 1555 1555 2.50 LINK OD1 ASN A 159 CA CA A 202 1555 1555 3.04 LINK OD1 ASP A 161 CA CA A 202 1555 1555 2.40 LINK O LYS A 163 CA CA A 202 1555 1555 2.40 LINK OE1 GLU A 168 CA CA A 202 1555 1555 2.61 LINK OE2 GLU A 168 CA CA A 202 1555 1555 2.55 LINK CA CA A 201 O HOH E 311 1555 5664 2.84 LINK OD1 ASP E 73 CA CA E 201 1555 1555 2.53 LINK OD1 ASN E 75 CA CA E 201 1555 1555 2.25 LINK OD1 ASP E 77 CA CA E 201 1555 1555 2.38 LINK O THR E 79 CA CA E 201 1555 1555 2.25 LINK OE1 GLU E 84 CA CA E 201 1555 1555 2.34 LINK OE2 GLU E 84 CA CA E 201 1555 1555 3.03 LINK OD1 ASP E 109 CA CA E 203 1555 1555 2.37 LINK OD1 ASP E 111 CA CA E 203 1555 1555 2.41 LINK OD1 ASN E 113 CA CA E 203 1555 1555 2.30 LINK O TYR E 115 CA CA E 203 1555 1555 2.34 LINK OE1 GLU E 120 CA CA E 203 1555 1555 2.44 LINK OE2 GLU E 120 CA CA E 203 1555 1555 2.59 LINK OD1 ASP E 157 CA CA E 202 1555 1555 2.48 LINK OD1 ASN E 159 CA CA E 202 1555 1555 3.15 LINK OD1 ASP E 161 CA CA E 202 1555 1555 2.23 LINK O LYS E 163 CA CA E 202 1555 1555 2.31 LINK OE1 GLU E 168 CA CA E 202 1555 1555 2.64 LINK OE2 GLU E 168 CA CA E 202 1555 1555 2.66 SITE 1 AC1 6 ASP A 73 ASN A 75 ASP A 77 THR A 79 SITE 2 AC1 6 GLU A 84 HOH E 311 SITE 1 AC2 5 ASP A 157 ASN A 159 ASP A 161 LYS A 163 SITE 2 AC2 5 GLU A 168 SITE 1 AC3 5 ASP A 109 ASP A 111 ASN A 113 TYR A 115 SITE 2 AC3 5 GLU A 120 SITE 1 AC4 5 ASP E 73 ASN E 75 ASP E 77 THR E 79 SITE 2 AC4 5 GLU E 84 SITE 1 AC5 5 ASP E 157 ASN E 159 ASP E 161 LYS E 163 SITE 2 AC5 5 GLU E 168 SITE 1 AC6 5 ASP E 109 ASP E 111 ASN E 113 TYR E 115 SITE 2 AC6 5 GLU E 120 CRYST1 50.660 50.660 283.460 90.00 90.00 120.00 P 61 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019739 0.011397 0.000000 0.00000 SCALE2 0.000000 0.022793 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003528 0.00000