PDB Short entry for 5H8F HEADER TRANSPORT PROTEIN 23-DEC-15 5H8F TITLE STRUCTURE OF THE APO HUMAN GLUN1/GLUN2A LBD COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTAMATE RECEPTOR IONOTROPIC, NMDA 2A; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 401-539, GT LINKER, UNP RESIDUES 661-802; COMPND 5 SYNONYM: GLUN2A, GLUTAMATE [NMDA] RECEPTOR SUBUNIT EPSILON-1, N- COMPND 6 METHYL D-ASPARTATE RECEPTOR SUBTYPE 2A, HNR2A; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: GLUTAMATE RECEPTOR IONOTROPIC, NMDA 1; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: UNP RESIDUES 394-544, GT LINKER, UNP RESIDUES 663-800; COMPND 12 SYNONYM: GLUN1, GLUTAMATE [NMDA] RECEPTOR SUBUNIT ZETA-1, N-METHYL-D- COMPND 13 ASPARTATE RECEPTOR SUBUNIT NR1, NMD-R1; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GRIN2A, NMDAR2A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: GRIN1, NMDAR1; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GLUN1, GLUN2A, NMDA, RECEPTOR, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR H.J.A.WALLWEBER,P.J.LUPARDUS REVDAT 3 27-SEP-23 5H8F 1 REMARK REVDAT 2 18-APR-18 5H8F 1 JRNL REMARK REVDAT 1 24-FEB-16 5H8F 0 JRNL AUTH D.H.HACKOS,P.J.LUPARDUS,T.GRAND,Y.CHEN,T.M.WANG,P.REYNEN, JRNL AUTH 2 A.GUSTAFSON,H.J.WALLWEBER,M.VOLGRAF,B.D.SELLERS,J.B.SCHWARZ, JRNL AUTH 3 P.PAOLETTI,M.SHENG,Q.ZHOU,J.E.HANSON JRNL TITL POSITIVE ALLOSTERIC MODULATORS OF GLUN2A-CONTAINING NMDARS JRNL TITL 2 WITH DISTINCT MODES OF ACTION AND IMPACTS ON CIRCUIT JRNL TITL 3 FUNCTION. JRNL REF NEURON V. 89 983 2016 JRNL REFN ISSN 1097-4199 JRNL PMID 26875626 JRNL DOI 10.1016/J.NEURON.2016.01.016 REMARK 2 REMARK 2 RESOLUTION. 1.81 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.5 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.81 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.44 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 55343 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 2796 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.81 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.86 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.89 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 3791 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2184 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3595 REMARK 3 BIN R VALUE (WORKING SET) : 0.2150 REMARK 3 BIN FREE R VALUE : 0.2813 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.17 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 196 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4371 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 51 REMARK 3 SOLVENT ATOMS : 412 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.28 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.92350 REMARK 3 B22 (A**2) : -3.64780 REMARK 3 B33 (A**2) : 0.72440 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.190 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.123 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.114 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.118 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.111 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4563 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 6172 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1600 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 109 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 661 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4563 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 596 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 5630 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.01 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.57 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 15.06 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5H8F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-JAN-16. REMARK 100 THE DEPOSITION ID IS D_1000216661. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-NOV-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : DIAMOND(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55343 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.810 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.03000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 21.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.81 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.87 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : 0.57700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2A5T REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1:2 V/V PROTEIN TO MOTHER LIQUOR (0.1 REMARK 280 M HEPES, PH 7.0, 10-13% PEG8000, 2 MM CALCIUM ACETATE), VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.13400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.36950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.59650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 62.36950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.13400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.59650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 SER A 2 REMARK 465 PRO A 3 REMARK 465 ASP A 4 REMARK 465 ASP A 5 REMARK 465 ASP A 25 REMARK 465 PRO A 26 REMARK 465 LEU A 27 REMARK 465 THR A 28 REMARK 465 HIS A 284 REMARK 465 ASN A 285 REMARK 465 GLY B 1 REMARK 465 SER B 2 REMARK 465 MET B 3 REMARK 465 SER B 4 REMARK 465 THR B 5 REMARK 465 ASN B 100 REMARK 465 ASN B 101 REMARK 465 SER B 102 REMARK 465 ASP B 292 REMARK 465 SER B 293 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 29 CG CD OE1 OE2 REMARK 470 ARG A 33 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 144 CG CD OE1 NE2 REMARK 470 SER A 149 OG REMARK 470 GLU A 226 CG CD OE1 OE2 REMARK 470 LYS A 229 CG CD CE NZ REMARK 470 SER A 235 OG REMARK 470 ASP B 50 CG OD1 OD2 REMARK 470 THR B 51 OG1 CG2 REMARK 470 ARG B 77 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 98 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 103 CG OD1 ND2 REMARK 470 GLU B 106 CG CD OE1 OE2 REMARK 470 ASP B 170 CG OD1 OD2 REMARK 470 LYS B 171 CG CD CE NZ REMARK 470 GLU B 244 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 15 94.91 -164.54 REMARK 500 ARG A 33 -126.61 58.05 REMARK 500 LYS A 74 65.98 69.84 REMARK 500 LYS A 86 -111.03 -121.66 REMARK 500 SER A 235 40.90 -87.08 REMARK 500 THR A 242 -156.91 -154.08 REMARK 500 GLN B 14 87.33 -164.61 REMARK 500 ASN B 49 -104.77 -81.69 REMARK 500 THR B 51 47.05 -94.83 REMARK 500 GLN B 145 -157.48 -159.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GLU A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GLY B 306 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5H8H RELATED DB: PDB REMARK 900 RELATED ID: 5H8N RELATED DB: PDB REMARK 900 RELATED ID: 5H8Q RELATED DB: PDB REMARK 900 RELATED ID: 5H8R RELATED DB: PDB REMARK 900 RELATED ID: 5H8S RELATED DB: PDB DBREF 5H8F A 3 141 UNP Q12879 NMDE1_HUMAN 401 539 DBREF 5H8F A 144 285 UNP Q12879 NMDE1_HUMAN 661 802 DBREF 5H8F B 3 153 UNP Q05586 NMDZ1_HUMAN 394 544 DBREF 5H8F B 156 293 UNP Q05586 NMDZ1_HUMAN 663 800 SEQADV 5H8F GLY A 1 UNP Q12879 EXPRESSION TAG SEQADV 5H8F SER A 2 UNP Q12879 EXPRESSION TAG SEQADV 5H8F GLY A 142 UNP Q12879 LINKER SEQADV 5H8F THR A 143 UNP Q12879 LINKER SEQADV 5H8F GLY B 1 UNP Q05586 EXPRESSION TAG SEQADV 5H8F SER B 2 UNP Q05586 EXPRESSION TAG SEQADV 5H8F GLY B 154 UNP Q05586 LINKER SEQADV 5H8F THR B 155 UNP Q05586 LINKER SEQRES 1 A 285 GLY SER PRO ASP ASP ASN HIS LEU SER ILE VAL THR LEU SEQRES 2 A 285 GLU GLU ALA PRO PHE VAL ILE VAL GLU ASP ILE ASP PRO SEQRES 3 A 285 LEU THR GLU THR CYS VAL ARG ASN THR VAL PRO CYS ARG SEQRES 4 A 285 LYS PHE VAL LYS ILE ASN ASN SER THR ASN GLU GLY MET SEQRES 5 A 285 ASN VAL LYS LYS CYS CYS LYS GLY PHE CYS ILE ASP ILE SEQRES 6 A 285 LEU LYS LYS LEU SER ARG THR VAL LYS PHE THR TYR ASP SEQRES 7 A 285 LEU TYR LEU VAL THR ASN GLY LYS HIS GLY LYS LYS VAL SEQRES 8 A 285 ASN ASN VAL TRP ASN GLY MET ILE GLY GLU VAL VAL TYR SEQRES 9 A 285 GLN ARG ALA VAL MET ALA VAL GLY SER LEU THR ILE ASN SEQRES 10 A 285 GLU GLU ARG SER GLU VAL VAL ASP PHE SER VAL PRO PHE SEQRES 11 A 285 VAL GLU THR GLY ILE SER VAL MET VAL SER ARG GLY THR SEQRES 12 A 285 GLN VAL THR GLY LEU SER ASP LYS LYS PHE GLN ARG PRO SEQRES 13 A 285 HIS ASP TYR SER PRO PRO PHE ARG PHE GLY THR VAL PRO SEQRES 14 A 285 ASN GLY SER THR GLU ARG ASN ILE ARG ASN ASN TYR PRO SEQRES 15 A 285 TYR MET HIS GLN TYR MET THR LYS PHE ASN GLN LYS GLY SEQRES 16 A 285 VAL GLU ASP ALA LEU VAL SER LEU LYS THR GLY LYS LEU SEQRES 17 A 285 ASP ALA PHE ILE TYR ASP ALA ALA VAL LEU ASN TYR LYS SEQRES 18 A 285 ALA GLY ARG ASP GLU GLY CYS LYS LEU VAL THR ILE GLY SEQRES 19 A 285 SER GLY TYR ILE PHE ALA THR THR GLY TYR GLY ILE ALA SEQRES 20 A 285 LEU GLN LYS GLY SER PRO TRP LYS ARG GLN ILE ASP LEU SEQRES 21 A 285 ALA LEU LEU GLN PHE VAL GLY ASP GLY GLU MET GLU GLU SEQRES 22 A 285 LEU GLU THR LEU TRP LEU THR GLY ILE CYS HIS ASN SEQRES 1 B 293 GLY SER MET SER THR ARG LEU LYS ILE VAL THR ILE HIS SEQRES 2 B 293 GLN GLU PRO PHE VAL TYR VAL LYS PRO THR LEU SER ASP SEQRES 3 B 293 GLY THR CYS LYS GLU GLU PHE THR VAL ASN GLY ASP PRO SEQRES 4 B 293 VAL LYS LYS VAL ILE CYS THR GLY PRO ASN ASP THR SER SEQRES 5 B 293 PRO GLY SER PRO ARG HIS THR VAL PRO GLN CYS CYS TYR SEQRES 6 B 293 GLY PHE CYS ILE ASP LEU LEU ILE LYS LEU ALA ARG THR SEQRES 7 B 293 MET ASN PHE THR TYR GLU VAL HIS LEU VAL ALA ASP GLY SEQRES 8 B 293 LYS PHE GLY THR GLN GLU ARG VAL ASN ASN SER ASN LYS SEQRES 9 B 293 LYS GLU TRP ASN GLY MET MET GLY GLU LEU LEU SER GLY SEQRES 10 B 293 GLN ALA ASP MET ILE VAL ALA PRO LEU THR ILE ASN ASN SEQRES 11 B 293 GLU ARG ALA GLN TYR ILE GLU PHE SER LYS PRO PHE LYS SEQRES 12 B 293 TYR GLN GLY LEU THR ILE LEU VAL LYS LYS GLY THR ARG SEQRES 13 B 293 ILE THR GLY ILE ASN ASP PRO ARG LEU ARG ASN PRO SER SEQRES 14 B 293 ASP LYS PHE ILE TYR ALA THR VAL LYS GLN SER SER VAL SEQRES 15 B 293 ASP ILE TYR PHE ARG ARG GLN VAL GLU LEU SER THR MET SEQRES 16 B 293 TYR ARG HIS MET GLU LYS HIS ASN TYR GLU SER ALA ALA SEQRES 17 B 293 GLU ALA ILE GLN ALA VAL ARG ASP ASN LYS LEU HIS ALA SEQRES 18 B 293 PHE ILE TRP ASP SER ALA VAL LEU GLU PHE GLU ALA SER SEQRES 19 B 293 GLN LYS CYS ASP LEU VAL THR THR GLY GLU LEU PHE PHE SEQRES 20 B 293 ARG SER GLY PHE GLY ILE GLY MET ARG LYS ASP SER PRO SEQRES 21 B 293 TRP LYS GLN ASN VAL SER LEU SER ILE LEU LYS SER HIS SEQRES 22 B 293 GLU ASN GLY PHE MET GLU ASP LEU ASP LYS THR TRP VAL SEQRES 23 B 293 ARG TYR GLN GLU CYS ASP SER HET GOL A 301 6 HET GLU A 302 10 HET GOL B 301 6 HET GOL B 302 6 HET GOL B 303 6 HET GOL B 304 6 HET GOL B 305 6 HET GLY B 306 5 HETNAM GOL GLYCEROL HETNAM GLU GLUTAMIC ACID HETNAM GLY GLYCINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 6(C3 H8 O3) FORMUL 4 GLU C5 H9 N O4 FORMUL 10 GLY C2 H5 N O2 FORMUL 11 HOH *412(H2 O) HELIX 1 AA1 GLY A 60 LYS A 74 1 15 HELIX 2 AA2 ASN A 96 TYR A 104 1 9 HELIX 3 AA3 ASN A 117 GLU A 122 1 6 HELIX 4 AA4 ASP A 150 ARG A 155 1 6 HELIX 5 AA5 PRO A 156 TYR A 159 5 4 HELIX 6 AA6 GLY A 171 TYR A 181 1 11 HELIX 7 AA7 TYR A 181 THR A 189 1 9 HELIX 8 AA8 LYS A 190 ASN A 192 5 3 HELIX 9 AA9 GLY A 195 THR A 205 1 11 HELIX 10 AB1 ALA A 215 ARG A 224 1 10 HELIX 11 AB2 TRP A 254 ASP A 268 1 15 HELIX 12 AB3 GLY A 269 LEU A 279 1 11 HELIX 13 AB4 GLY B 66 ASN B 80 1 15 HELIX 14 AB5 ASN B 108 SER B 116 1 9 HELIX 15 AB6 ASN B 129 GLN B 134 1 6 HELIX 16 AB7 ASP B 162 ASN B 167 1 6 HELIX 17 AB8 SER B 180 GLN B 189 1 10 HELIX 18 AB9 LEU B 192 LYS B 201 1 10 HELIX 19 AC1 SER B 206 ASP B 216 1 11 HELIX 20 AC2 SER B 226 LYS B 236 1 11 HELIX 21 AC3 TRP B 261 ASN B 275 1 15 HELIX 22 AC4 GLY B 276 VAL B 286 1 11 SHEET 1 AA1 8 ILE A 20 ASP A 23 0 SHEET 2 AA1 8 GLY A 51 LYS A 59 -1 O CYS A 57 N GLU A 22 SHEET 3 AA1 8 VAL A 36 LYS A 43 -1 N VAL A 36 O CYS A 58 SHEET 4 AA1 8 THR A 76 LEU A 81 1 O LEU A 81 N ARG A 39 SHEET 5 AA1 8 HIS A 7 THR A 12 1 N ILE A 10 O TYR A 80 SHEET 6 AA1 8 MET A 109 ALA A 110 1 O MET A 109 N VAL A 11 SHEET 7 AA1 8 ALA A 247 LEU A 248 -1 O ALA A 247 N ALA A 110 SHEET 8 AA1 8 ASP A 125 PHE A 126 -1 N ASP A 125 O LEU A 248 SHEET 1 AA2 2 LYS A 90 VAL A 91 0 SHEET 2 AA2 2 VAL A 94 TRP A 95 -1 O VAL A 94 N VAL A 91 SHEET 1 AA3 4 PHE A 165 GLY A 166 0 SHEET 2 AA3 4 ALA A 210 ASP A 214 1 O ILE A 212 N GLY A 166 SHEET 3 AA3 4 VAL A 131 SER A 140 -1 N MET A 138 O PHE A 211 SHEET 4 AA3 4 LEU A 230 THR A 232 -1 O VAL A 231 N VAL A 139 SHEET 1 AA4 4 PHE A 165 GLY A 166 0 SHEET 2 AA4 4 ALA A 210 ASP A 214 1 O ILE A 212 N GLY A 166 SHEET 3 AA4 4 VAL A 131 SER A 140 -1 N MET A 138 O PHE A 211 SHEET 4 AA4 4 PHE A 239 TYR A 244 -1 O PHE A 239 N ILE A 135 SHEET 1 AA5 8 TYR B 19 PRO B 22 0 SHEET 2 AA5 8 THR B 59 TYR B 65 -1 O TYR B 65 N TYR B 19 SHEET 3 AA5 8 VAL B 43 PRO B 48 -1 N VAL B 43 O CYS B 64 SHEET 4 AA5 8 TYR B 83 LEU B 87 1 O LEU B 87 N THR B 46 SHEET 5 AA5 8 LEU B 7 THR B 11 1 N ILE B 9 O GLU B 84 SHEET 6 AA5 8 MET B 121 ILE B 122 1 O MET B 121 N VAL B 10 SHEET 7 AA5 8 GLY B 254 MET B 255 -1 O GLY B 254 N ILE B 122 SHEET 8 AA5 8 GLU B 137 PHE B 138 -1 N GLU B 137 O MET B 255 SHEET 1 AA6 2 GLN B 96 ARG B 98 0 SHEET 2 AA6 2 LYS B 105 TRP B 107 -1 O GLU B 106 N GLU B 97 SHEET 1 AA7 4 TYR B 174 ALA B 175 0 SHEET 2 AA7 4 ALA B 221 ASP B 225 1 O ILE B 223 N ALA B 175 SHEET 3 AA7 4 LYS B 143 LYS B 152 -1 N LEU B 150 O PHE B 222 SHEET 4 AA7 4 LEU B 239 PHE B 251 -1 O PHE B 246 N LEU B 147 SSBOND 1 CYS A 31 CYS A 57 1555 1555 2.03 SSBOND 2 CYS A 38 CYS A 58 1555 1555 2.04 SSBOND 3 CYS A 228 CYS A 283 1555 1555 2.05 SSBOND 4 CYS B 29 CYS B 63 1555 1555 2.03 SSBOND 5 CYS B 45 CYS B 64 1555 1555 2.05 SSBOND 6 CYS B 237 CYS B 291 1555 1555 2.05 CISPEP 1 ALA A 16 PRO A 17 0 4.37 CISPEP 2 SER A 160 PRO A 161 0 1.83 CISPEP 3 GLU B 15 PRO B 16 0 2.89 SITE 1 AC1 8 ILE A 238 PHE A 239 ALA A 240 THR A 241 SITE 2 AC1 8 HOH A 437 HIS B 273 GLU B 279 HOH B 460 SITE 1 AC2 11 HIS A 87 SER A 113 THR A 115 ARG A 120 SITE 2 AC2 11 GLY A 171 SER A 172 THR A 173 TYR A 213 SITE 3 AC2 11 ASP A 214 HOH A 455 HOH A 521 SITE 1 AC3 5 THR B 28 CYS B 29 LYS B 42 HOH B 530 SITE 2 AC3 5 HOH B 542 SITE 1 AC4 5 THR B 34 VAL B 35 THR B 284 TRP B 285 SITE 2 AC4 5 HOH B 432 SITE 1 AC5 5 THR B 34 ASP B 38 PRO B 39 LYS B 41 SITE 2 AC5 5 ASP B 70 SITE 1 AC6 7 ASP B 120 ARG B 256 SER B 259 PRO B 260 SITE 2 AC6 7 TRP B 261 HOH B 402 HOH B 516 SITE 1 AC7 7 ASP A 259 ALA B 133 ILE B 136 GLU B 137 SITE 2 AC7 7 PHE B 138 LYS B 257 HOH B 422 SITE 1 AC8 8 PHE B 93 PRO B 125 LEU B 126 THR B 127 SITE 2 AC8 8 ARG B 132 SER B 180 SER B 181 ASP B 225 CRYST1 54.268 89.193 124.739 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018427 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011212 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008017 0.00000