PDB Short entry for 5HKW HEADER LIGASE 14-JAN-16 5HKW TITLE CRYSTAL STRUCTURE OF APO C-CBL TKBD REFINED TO 2.25 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE CBL; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: TYROSINE KINASE BINDING DOMAIN (TKBD), RESIDUES 47-351; COMPND 5 SYNONYM: CASITAS B-LINEAGE LYMPHOMA PROTO-ONCOGENE,PROTO-ONCOGENE C- COMPND 6 CBL,RING FINGER PROTEIN 55,SIGNAL TRANSDUCTION PROTEIN CBL; COMPND 7 EC: 6.3.2.-; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CBL, CBL2, RNF55; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) PLYSES-RARE; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PTBSG KEYWDS SPRY2, CBL, PROTEIN-PROTEIN INTERACTION, ANTICANCER TARGET, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR S.LOVELL,K.P.BATTAILE,N.MEHZABEEN,N.ZHANG,A.COOPER,P.GAO,R.P.PEREZ REVDAT 4 27-SEP-23 5HKW 1 LINK REVDAT 3 25-DEC-19 5HKW 1 REMARK REVDAT 2 20-SEP-17 5HKW 1 REMARK REVDAT 1 18-JAN-17 5HKW 0 JRNL AUTH N.ZHANG,D.FERRIS,S.LOVELL,A.SMALTER-HALL,K.P.BATTAILE, JRNL AUTH 2 A.ANBANANDAM,P.GAO,R.HANZLIK,R.P.PEREZ JRNL TITL CRYSTAL STRUCTURE OF APO C-CBL TKBD REFINED TO 2.25 A JRNL TITL 2 RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.46 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 67009 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 3346 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.4702 - 6.4828 0.99 2733 115 0.1440 0.1862 REMARK 3 2 6.4828 - 5.1484 0.99 2692 139 0.1631 0.2008 REMARK 3 3 5.1484 - 4.4985 0.99 2634 144 0.1385 0.2050 REMARK 3 4 4.4985 - 4.0875 0.99 2644 154 0.1362 0.1987 REMARK 3 5 4.0875 - 3.7948 1.00 2642 156 0.1497 0.1975 REMARK 3 6 3.7948 - 3.5711 0.99 2627 153 0.1674 0.2261 REMARK 3 7 3.5711 - 3.3924 1.00 2639 141 0.1845 0.2623 REMARK 3 8 3.3924 - 3.2448 0.99 2660 128 0.1837 0.2115 REMARK 3 9 3.2448 - 3.1199 1.00 2676 133 0.1926 0.2236 REMARK 3 10 3.1199 - 3.0123 1.00 2658 123 0.1942 0.2468 REMARK 3 11 3.0123 - 2.9181 1.00 2667 129 0.2132 0.2698 REMARK 3 12 2.9181 - 2.8347 1.00 2624 150 0.2139 0.2528 REMARK 3 13 2.8347 - 2.7601 1.00 2661 142 0.2142 0.2771 REMARK 3 14 2.7601 - 2.6928 1.00 2682 133 0.2159 0.3039 REMARK 3 15 2.6928 - 2.6316 1.00 2648 130 0.2235 0.2678 REMARK 3 16 2.6316 - 2.5756 1.00 2652 112 0.2177 0.3035 REMARK 3 17 2.5756 - 2.5240 1.00 2616 161 0.2328 0.2946 REMARK 3 18 2.5240 - 2.4764 1.00 2639 161 0.2303 0.3021 REMARK 3 19 2.4764 - 2.4322 1.00 2644 126 0.2363 0.3129 REMARK 3 20 2.4322 - 2.3910 1.00 2657 139 0.2402 0.2580 REMARK 3 21 2.3910 - 2.3524 1.00 2644 137 0.2495 0.3125 REMARK 3 22 2.3524 - 2.3162 1.00 2663 146 0.2512 0.3365 REMARK 3 23 2.3162 - 2.2822 1.00 2605 140 0.2710 0.2995 REMARK 3 24 2.2822 - 2.2500 1.00 2656 154 0.2696 0.3113 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.510 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 40.66 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 7478 REMARK 3 ANGLE : 0.975 10099 REMARK 3 CHIRALITY : 0.045 1098 REMARK 3 PLANARITY : 0.007 1280 REMARK 3 DIHEDRAL : 14.598 2728 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5HKW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-JAN-16. REMARK 100 THE DEPOSITION ID IS D_1000217233. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.3.6 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 67019 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 45.120 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.64000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.6 REMARK 200 STARTING MODEL: 3BUM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% (W/V) PEG 3350, 0.2M SODIUM REMARK 280 CITRATE DIBASIC TRIHYRATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 79.55800 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 53.26150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 79.55800 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 53.26150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 44 REMARK 465 ASN A 45 REMARK 465 ALA A 46 REMARK 465 PRO A 47 REMARK 465 THR A 350 REMARK 465 GLY A 351 REMARK 465 SER B 44 REMARK 465 ASN B 45 REMARK 465 ALA B 46 REMARK 465 PRO B 47 REMARK 465 THR B 350 REMARK 465 GLY B 351 REMARK 465 SER C 44 REMARK 465 ASN C 45 REMARK 465 ALA C 46 REMARK 465 PRO C 47 REMARK 465 THR C 350 REMARK 465 GLY C 351 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 53 CG CD CE NZ REMARK 470 LYS A 74 CD CE NZ REMARK 470 LYS A 124 NZ REMARK 470 GLU A 188 CD OE1 OE2 REMARK 470 LYS A 192 CD CE NZ REMARK 470 LYS A 278 CD CE NZ REMARK 470 ASN A 321 CG OD1 ND2 REMARK 470 ARG A 333 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 345 CG CD OE1 NE2 REMARK 470 LYS B 53 CG CD CE NZ REMARK 470 LYS B 54 CG CD CE NZ REMARK 470 LYS B 58 CD CE NZ REMARK 470 LYS B 61 CG CD CE NZ REMARK 470 LYS B 74 CE NZ REMARK 470 GLU B 142 CG CD OE1 OE2 REMARK 470 GLU B 188 CD OE1 OE2 REMARK 470 ARG B 191 NE CZ NH1 NH2 REMARK 470 LYS B 278 CE NZ REMARK 470 ARG B 299 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 302 CG CD OE1 NE2 REMARK 470 ASN B 321 CG OD1 ND2 REMARK 470 ARG B 333 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 345 CG CD OE1 NE2 REMARK 470 LYS C 53 CG CD CE NZ REMARK 470 LYS C 54 CG CD CE NZ REMARK 470 LYS C 78 CG CD CE NZ REMARK 470 LYS C 105 CD CE NZ REMARK 470 GLU C 107 CG CD OE1 OE2 REMARK 470 LYS C 134 CG CD CE NZ REMARK 470 LYS C 137 CD CE NZ REMARK 470 GLU C 138 CG CD OE1 OE2 REMARK 470 ARG C 139 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 142 CG CD OE1 OE2 REMARK 470 LYS C 283 CG CD CE NZ REMARK 470 HIS C 286 CG ND1 CD2 CE1 NE2 REMARK 470 ARG C 299 CG CD NE CZ NH1 NH2 REMARK 470 ASP C 311 CG OD1 OD2 REMARK 470 ASN C 313 CG OD1 ND2 REMARK 470 HIS C 320 CG ND1 CD2 CE1 NE2 REMARK 470 ASN C 321 CG OD1 ND2 REMARK 470 LYS C 322 CG CD CE NZ REMARK 470 PHE C 325 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG C 333 CG CD NE CZ NH1 NH2 REMARK 470 GLN C 345 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN C 146 NH2 ARG C 149 2.16 REMARK 500 OH TYR A 92 NH1 ARG A 96 2.18 REMARK 500 O ASN C 144 NH1 ARG C 149 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 585 O HOH C 528 4456 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 77 109.96 -59.19 REMARK 500 LYS A 137 -120.56 42.43 REMARK 500 PHE A 169 57.57 -117.43 REMARK 500 ALA A 270 -136.12 46.71 REMARK 500 LYS A 283 -9.34 -58.79 REMARK 500 HIS A 320 -85.46 -98.71 REMARK 500 LYS B 137 -126.33 46.09 REMARK 500 ALA B 270 -139.24 53.29 REMARK 500 HIS B 320 -86.58 -80.48 REMARK 500 ASN C 72 124.16 -39.97 REMARK 500 ALA C 76 55.16 34.57 REMARK 500 LYS C 137 -134.01 59.49 REMARK 500 GLN C 175 17.08 -141.57 REMARK 500 ALA C 270 -133.75 55.87 REMARK 500 LYS C 287 70.30 172.67 REMARK 500 HIS C 320 -92.42 -70.72 REMARK 500 ARG C 333 31.30 -81.57 REMARK 500 GLU C 334 17.56 -152.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 401 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 229 OD1 REMARK 620 2 THR A 231 OG1 95.4 REMARK 620 3 ASN A 233 OD1 88.0 82.4 REMARK 620 4 TYR A 235 O 87.9 167.5 85.6 REMARK 620 5 GLU A 240 OE1 124.3 104.6 145.2 83.3 REMARK 620 6 GLU A 240 OE2 89.8 70.9 152.9 121.3 51.5 REMARK 620 7 HOH A 511 O 166.3 71.1 92.1 105.8 59.8 83.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 401 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 229 OD1 REMARK 620 2 THR B 231 OG1 92.8 REMARK 620 3 ASN B 233 OD1 85.2 80.5 REMARK 620 4 TYR B 235 O 90.7 164.0 84.3 REMARK 620 5 GLU B 240 OE1 122.4 106.6 150.3 84.4 REMARK 620 6 GLU B 240 OE2 88.4 68.3 147.8 127.4 53.4 REMARK 620 7 HOH B 537 O 164.9 72.0 92.4 103.9 63.9 85.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA C 401 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 229 OD1 REMARK 620 2 THR C 231 OG1 94.9 REMARK 620 3 ASN C 233 OD1 87.4 83.2 REMARK 620 4 TYR C 235 O 89.8 168.7 86.7 REMARK 620 5 GLU C 240 OE1 119.0 101.0 152.4 85.6 REMARK 620 6 GLU C 240 OE2 83.5 68.3 149.1 122.6 51.0 REMARK 620 7 HOH C 506 O 160.8 67.5 97.7 108.9 60.3 82.7 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA C 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5HL0 RELATED DB: PDB REMARK 900 RELATED ID: 5HKX RELATED DB: PDB REMARK 900 RELATED ID: 5HKZ RELATED DB: PDB REMARK 900 RELATED ID: 5HKY RELATED DB: PDB DBREF 5HKW A 47 351 UNP P22681 CBL_HUMAN 47 351 DBREF 5HKW B 47 351 UNP P22681 CBL_HUMAN 47 351 DBREF 5HKW C 47 351 UNP P22681 CBL_HUMAN 47 351 SEQADV 5HKW SER A 44 UNP P22681 EXPRESSION TAG SEQADV 5HKW ASN A 45 UNP P22681 EXPRESSION TAG SEQADV 5HKW ALA A 46 UNP P22681 EXPRESSION TAG SEQADV 5HKW SER B 44 UNP P22681 EXPRESSION TAG SEQADV 5HKW ASN B 45 UNP P22681 EXPRESSION TAG SEQADV 5HKW ALA B 46 UNP P22681 EXPRESSION TAG SEQADV 5HKW SER C 44 UNP P22681 EXPRESSION TAG SEQADV 5HKW ASN C 45 UNP P22681 EXPRESSION TAG SEQADV 5HKW ALA C 46 UNP P22681 EXPRESSION TAG SEQRES 1 A 308 SER ASN ALA PRO PRO GLY THR VAL ASP LYS LYS MET VAL SEQRES 2 A 308 GLU LYS CYS TRP LYS LEU MET ASP LYS VAL VAL ARG LEU SEQRES 3 A 308 CYS GLN ASN PRO LYS LEU ALA LEU LYS ASN SER PRO PRO SEQRES 4 A 308 TYR ILE LEU ASP LEU LEU PRO ASP THR TYR GLN HIS LEU SEQRES 5 A 308 ARG THR ILE LEU SER ARG TYR GLU GLY LYS MET GLU THR SEQRES 6 A 308 LEU GLY GLU ASN GLU TYR PHE ARG VAL PHE MET GLU ASN SEQRES 7 A 308 LEU MET LYS LYS THR LYS GLN THR ILE SER LEU PHE LYS SEQRES 8 A 308 GLU GLY LYS GLU ARG MET TYR GLU GLU ASN SER GLN PRO SEQRES 9 A 308 ARG ARG ASN LEU THR LYS LEU SER LEU ILE PHE SER HIS SEQRES 10 A 308 MET LEU ALA GLU LEU LYS GLY ILE PHE PRO SER GLY LEU SEQRES 11 A 308 PHE GLN GLY ASP THR PHE ARG ILE THR LYS ALA ASP ALA SEQRES 12 A 308 ALA GLU PHE TRP ARG LYS ALA PHE GLY GLU LYS THR ILE SEQRES 13 A 308 VAL PRO TRP LYS SER PHE ARG GLN ALA LEU HIS GLU VAL SEQRES 14 A 308 HIS PRO ILE SER SER GLY LEU GLU ALA MET ALA LEU LYS SEQRES 15 A 308 SER THR ILE ASP LEU THR CYS ASN ASP TYR ILE SER VAL SEQRES 16 A 308 PHE GLU PHE ASP ILE PHE THR ARG LEU PHE GLN PRO TRP SEQRES 17 A 308 SER SER LEU LEU ARG ASN TRP ASN SER LEU ALA VAL THR SEQRES 18 A 308 HIS PRO GLY TYR MET ALA PHE LEU THR TYR ASP GLU VAL SEQRES 19 A 308 LYS ALA ARG LEU GLN LYS PHE ILE HIS LYS PRO GLY SER SEQRES 20 A 308 TYR ILE PHE ARG LEU SER CYS THR ARG LEU GLY GLN TRP SEQRES 21 A 308 ALA ILE GLY TYR VAL THR ALA ASP GLY ASN ILE LEU GLN SEQRES 22 A 308 THR ILE PRO HIS ASN LYS PRO LEU PHE GLN ALA LEU ILE SEQRES 23 A 308 ASP GLY PHE ARG GLU GLY PHE TYR LEU PHE PRO ASP GLY SEQRES 24 A 308 ARG ASN GLN ASN PRO ASP LEU THR GLY SEQRES 1 B 308 SER ASN ALA PRO PRO GLY THR VAL ASP LYS LYS MET VAL SEQRES 2 B 308 GLU LYS CYS TRP LYS LEU MET ASP LYS VAL VAL ARG LEU SEQRES 3 B 308 CYS GLN ASN PRO LYS LEU ALA LEU LYS ASN SER PRO PRO SEQRES 4 B 308 TYR ILE LEU ASP LEU LEU PRO ASP THR TYR GLN HIS LEU SEQRES 5 B 308 ARG THR ILE LEU SER ARG TYR GLU GLY LYS MET GLU THR SEQRES 6 B 308 LEU GLY GLU ASN GLU TYR PHE ARG VAL PHE MET GLU ASN SEQRES 7 B 308 LEU MET LYS LYS THR LYS GLN THR ILE SER LEU PHE LYS SEQRES 8 B 308 GLU GLY LYS GLU ARG MET TYR GLU GLU ASN SER GLN PRO SEQRES 9 B 308 ARG ARG ASN LEU THR LYS LEU SER LEU ILE PHE SER HIS SEQRES 10 B 308 MET LEU ALA GLU LEU LYS GLY ILE PHE PRO SER GLY LEU SEQRES 11 B 308 PHE GLN GLY ASP THR PHE ARG ILE THR LYS ALA ASP ALA SEQRES 12 B 308 ALA GLU PHE TRP ARG LYS ALA PHE GLY GLU LYS THR ILE SEQRES 13 B 308 VAL PRO TRP LYS SER PHE ARG GLN ALA LEU HIS GLU VAL SEQRES 14 B 308 HIS PRO ILE SER SER GLY LEU GLU ALA MET ALA LEU LYS SEQRES 15 B 308 SER THR ILE ASP LEU THR CYS ASN ASP TYR ILE SER VAL SEQRES 16 B 308 PHE GLU PHE ASP ILE PHE THR ARG LEU PHE GLN PRO TRP SEQRES 17 B 308 SER SER LEU LEU ARG ASN TRP ASN SER LEU ALA VAL THR SEQRES 18 B 308 HIS PRO GLY TYR MET ALA PHE LEU THR TYR ASP GLU VAL SEQRES 19 B 308 LYS ALA ARG LEU GLN LYS PHE ILE HIS LYS PRO GLY SER SEQRES 20 B 308 TYR ILE PHE ARG LEU SER CYS THR ARG LEU GLY GLN TRP SEQRES 21 B 308 ALA ILE GLY TYR VAL THR ALA ASP GLY ASN ILE LEU GLN SEQRES 22 B 308 THR ILE PRO HIS ASN LYS PRO LEU PHE GLN ALA LEU ILE SEQRES 23 B 308 ASP GLY PHE ARG GLU GLY PHE TYR LEU PHE PRO ASP GLY SEQRES 24 B 308 ARG ASN GLN ASN PRO ASP LEU THR GLY SEQRES 1 C 308 SER ASN ALA PRO PRO GLY THR VAL ASP LYS LYS MET VAL SEQRES 2 C 308 GLU LYS CYS TRP LYS LEU MET ASP LYS VAL VAL ARG LEU SEQRES 3 C 308 CYS GLN ASN PRO LYS LEU ALA LEU LYS ASN SER PRO PRO SEQRES 4 C 308 TYR ILE LEU ASP LEU LEU PRO ASP THR TYR GLN HIS LEU SEQRES 5 C 308 ARG THR ILE LEU SER ARG TYR GLU GLY LYS MET GLU THR SEQRES 6 C 308 LEU GLY GLU ASN GLU TYR PHE ARG VAL PHE MET GLU ASN SEQRES 7 C 308 LEU MET LYS LYS THR LYS GLN THR ILE SER LEU PHE LYS SEQRES 8 C 308 GLU GLY LYS GLU ARG MET TYR GLU GLU ASN SER GLN PRO SEQRES 9 C 308 ARG ARG ASN LEU THR LYS LEU SER LEU ILE PHE SER HIS SEQRES 10 C 308 MET LEU ALA GLU LEU LYS GLY ILE PHE PRO SER GLY LEU SEQRES 11 C 308 PHE GLN GLY ASP THR PHE ARG ILE THR LYS ALA ASP ALA SEQRES 12 C 308 ALA GLU PHE TRP ARG LYS ALA PHE GLY GLU LYS THR ILE SEQRES 13 C 308 VAL PRO TRP LYS SER PHE ARG GLN ALA LEU HIS GLU VAL SEQRES 14 C 308 HIS PRO ILE SER SER GLY LEU GLU ALA MET ALA LEU LYS SEQRES 15 C 308 SER THR ILE ASP LEU THR CYS ASN ASP TYR ILE SER VAL SEQRES 16 C 308 PHE GLU PHE ASP ILE PHE THR ARG LEU PHE GLN PRO TRP SEQRES 17 C 308 SER SER LEU LEU ARG ASN TRP ASN SER LEU ALA VAL THR SEQRES 18 C 308 HIS PRO GLY TYR MET ALA PHE LEU THR TYR ASP GLU VAL SEQRES 19 C 308 LYS ALA ARG LEU GLN LYS PHE ILE HIS LYS PRO GLY SER SEQRES 20 C 308 TYR ILE PHE ARG LEU SER CYS THR ARG LEU GLY GLN TRP SEQRES 21 C 308 ALA ILE GLY TYR VAL THR ALA ASP GLY ASN ILE LEU GLN SEQRES 22 C 308 THR ILE PRO HIS ASN LYS PRO LEU PHE GLN ALA LEU ILE SEQRES 23 C 308 ASP GLY PHE ARG GLU GLY PHE TYR LEU PHE PRO ASP GLY SEQRES 24 C 308 ARG ASN GLN ASN PRO ASP LEU THR GLY HET NA A 401 1 HET NA B 401 1 HET NA C 401 1 HETNAM NA SODIUM ION FORMUL 4 NA 3(NA 1+) FORMUL 7 HOH *246(H2 O) HELIX 1 AA1 ASP A 52 ASN A 72 1 21 HELIX 2 AA2 PRO A 73 ALA A 76 5 4 HELIX 3 AA3 TYR A 83 TYR A 102 1 20 HELIX 4 AA4 LYS A 105 ASN A 112 1 8 HELIX 5 AA5 ASN A 112 LYS A 137 1 26 HELIX 6 AA6 GLU A 138 GLU A 142 5 5 HELIX 7 AA7 SER A 145 PHE A 169 1 25 HELIX 8 AA8 PRO A 170 LEU A 173 5 4 HELIX 9 AA9 GLN A 175 PHE A 179 5 5 HELIX 10 AB1 LYS A 183 GLY A 195 1 13 HELIX 11 AB2 TRP A 202 HIS A 213 1 12 HELIX 12 AB3 SER A 217 ASP A 229 1 13 HELIX 13 AB4 VAL A 238 PHE A 248 1 11 HELIX 14 AB5 PRO A 250 SER A 252 5 3 HELIX 15 AB6 SER A 253 VAL A 263 1 11 HELIX 16 AB7 THR A 273 LYS A 283 1 11 HELIX 17 AB8 PRO A 323 GLU A 334 1 12 HELIX 18 AB9 ASP B 52 GLN B 71 1 20 HELIX 19 AC1 ASN B 72 ALA B 76 5 5 HELIX 20 AC2 TYR B 83 TYR B 102 1 20 HELIX 21 AC3 LYS B 105 ASN B 112 1 8 HELIX 22 AC4 ASN B 112 LYS B 137 1 26 HELIX 23 AC5 GLU B 138 GLU B 142 5 5 HELIX 24 AC6 SER B 145 PHE B 169 1 25 HELIX 25 AC7 PRO B 170 LEU B 173 5 4 HELIX 26 AC8 GLN B 175 PHE B 179 5 5 HELIX 27 AC9 LYS B 183 GLY B 195 1 13 HELIX 28 AD1 TRP B 202 GLU B 211 1 10 HELIX 29 AD2 SER B 217 ASP B 229 1 13 HELIX 30 AD3 VAL B 238 GLN B 249 1 12 HELIX 31 AD4 PRO B 250 SER B 252 5 3 HELIX 32 AD5 SER B 253 VAL B 263 1 11 HELIX 33 AD6 THR B 273 LYS B 283 1 11 HELIX 34 AD7 PRO B 323 GLU B 334 1 12 HELIX 35 AD8 ASP C 52 ASN C 72 1 21 HELIX 36 AD9 PRO C 73 ALA C 76 5 4 HELIX 37 AE1 TYR C 83 TYR C 102 1 20 HELIX 38 AE2 LYS C 105 ASN C 112 1 8 HELIX 39 AE3 ASN C 112 LYS C 137 1 26 HELIX 40 AE4 GLU C 138 TYR C 141 5 4 HELIX 41 AE5 SER C 145 PHE C 169 1 25 HELIX 42 AE6 PRO C 170 LEU C 173 5 4 HELIX 43 AE7 GLN C 175 PHE C 179 5 5 HELIX 44 AE8 LYS C 183 GLY C 195 1 13 HELIX 45 AE9 TRP C 202 HIS C 213 1 12 HELIX 46 AF1 SER C 217 ASP C 229 1 13 HELIX 47 AF2 VAL C 238 PHE C 248 1 11 HELIX 48 AF3 PRO C 250 SER C 252 5 3 HELIX 49 AF4 SER C 253 VAL C 263 1 11 HELIX 50 AF5 THR C 273 LEU C 281 1 9 HELIX 51 AF6 GLN C 282 ILE C 285 5 4 HELIX 52 AF7 PRO C 323 ARG C 333 1 11 SHEET 1 AA1 2 ILE A 199 PRO A 201 0 SHEET 2 AA1 2 TYR A 235 SER A 237 -1 O ILE A 236 N VAL A 200 SHEET 1 AA2 4 TYR A 268 PHE A 271 0 SHEET 2 AA2 4 SER A 290 LEU A 295 1 O LEU A 295 N ALA A 270 SHEET 3 AA2 4 TRP A 303 VAL A 308 -1 O GLY A 306 N ILE A 292 SHEET 4 AA2 4 ILE A 314 THR A 317 -1 O THR A 317 N ILE A 305 SHEET 1 AA3 3 TYR A 268 PHE A 271 0 SHEET 2 AA3 3 SER A 290 LEU A 295 1 O LEU A 295 N ALA A 270 SHEET 3 AA3 3 PHE A 339 PRO A 340 1 O PHE A 339 N TYR A 291 SHEET 1 AA4 2 ILE B 199 PRO B 201 0 SHEET 2 AA4 2 TYR B 235 SER B 237 -1 O ILE B 236 N VAL B 200 SHEET 1 AA5 4 TYR B 268 PHE B 271 0 SHEET 2 AA5 4 SER B 290 LEU B 295 1 O LEU B 295 N ALA B 270 SHEET 3 AA5 4 TRP B 303 VAL B 308 -1 O ALA B 304 N ARG B 294 SHEET 4 AA5 4 ILE B 314 THR B 317 -1 O THR B 317 N ILE B 305 SHEET 1 AA6 3 TYR B 268 PHE B 271 0 SHEET 2 AA6 3 SER B 290 LEU B 295 1 O LEU B 295 N ALA B 270 SHEET 3 AA6 3 PHE B 339 PRO B 340 1 O PHE B 339 N TYR B 291 SHEET 1 AA7 2 ILE C 199 PRO C 201 0 SHEET 2 AA7 2 TYR C 235 SER C 237 -1 O ILE C 236 N VAL C 200 SHEET 1 AA8 4 TYR C 268 PHE C 271 0 SHEET 2 AA8 4 SER C 290 SER C 296 1 O LEU C 295 N ALA C 270 SHEET 3 AA8 4 ARG C 299 VAL C 308 -1 O ALA C 304 N ARG C 294 SHEET 4 AA8 4 ILE C 314 THR C 317 -1 O THR C 317 N ILE C 305 SHEET 1 AA9 3 TYR C 268 PHE C 271 0 SHEET 2 AA9 3 SER C 290 SER C 296 1 O LEU C 295 N ALA C 270 SHEET 3 AA9 3 PHE C 339 PRO C 340 1 O PHE C 339 N TYR C 291 LINK OD1 ASP A 229 NA NA A 401 1555 1555 2.38 LINK OG1 THR A 231 NA NA A 401 1555 1555 2.70 LINK OD1 ASN A 233 NA NA A 401 1555 1555 2.35 LINK O TYR A 235 NA NA A 401 1555 1555 2.32 LINK OE1 GLU A 240 NA NA A 401 1555 1555 2.57 LINK OE2 GLU A 240 NA NA A 401 1555 1555 2.51 LINK NA NA A 401 O HOH A 511 1555 1555 2.66 LINK OD1 ASP B 229 NA NA B 401 1555 1555 2.29 LINK OG1 THR B 231 NA NA B 401 1555 1555 2.76 LINK OD1 ASN B 233 NA NA B 401 1555 1555 2.27 LINK O TYR B 235 NA NA B 401 1555 1555 2.27 LINK OE1 GLU B 240 NA NA B 401 1555 1555 2.45 LINK OE2 GLU B 240 NA NA B 401 1555 1555 2.49 LINK NA NA B 401 O HOH B 537 1555 1555 2.66 LINK OD1 ASP C 229 NA NA C 401 1555 1555 2.29 LINK OG1 THR C 231 NA NA C 401 1555 1555 2.56 LINK OD1 ASN C 233 NA NA C 401 1555 1555 2.30 LINK O TYR C 235 NA NA C 401 1555 1555 2.32 LINK OE1 GLU C 240 NA NA C 401 1555 1555 2.55 LINK OE2 GLU C 240 NA NA C 401 1555 1555 2.56 LINK NA NA C 401 O HOH C 506 1555 1555 2.50 CISPEP 1 PRO A 81 PRO A 82 0 -1.04 CISPEP 2 GLN A 249 PRO A 250 0 -0.58 CISPEP 3 PRO B 81 PRO B 82 0 4.88 CISPEP 4 GLN B 249 PRO B 250 0 1.11 CISPEP 5 PRO C 81 PRO C 82 0 -2.36 CISPEP 6 GLN C 249 PRO C 250 0 0.41 SITE 1 AC1 6 ASP A 229 THR A 231 ASN A 233 TYR A 235 SITE 2 AC1 6 GLU A 240 HOH A 511 SITE 1 AC2 6 ASP B 229 THR B 231 ASN B 233 TYR B 235 SITE 2 AC2 6 GLU B 240 HOH B 537 SITE 1 AC3 6 ASP C 229 THR C 231 ASN C 233 TYR C 235 SITE 2 AC3 6 GLU C 240 HOH C 506 CRYST1 159.116 106.523 84.984 90.00 92.13 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006285 0.000000 0.000234 0.00000 SCALE2 0.000000 0.009388 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011775 0.00000