PDB Short entry for 5I2S HEADER VIRAL PROTEIN 09-FEB-16 5I2S TITLE PREFUSION FORM OF THE VESICULAR STOMATITIS VIRUS GLYCOPROTEIN G TITLE 2 ECTODOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCOPROTEIN G; COMPND 3 CHAIN: A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VESICULAR STOMATITIS INDIANA VIRUS (STRAIN SOURCE 3 MUDD-SUMMERS); SOURCE 4 ORGANISM_COMMON: VSIV; SOURCE 5 ORGANISM_TAXID: 11279; SOURCE 6 STRAIN: MUDD-SUMMERS KEYWDS VIRION PROTEIN, MEMBRANE PROTEIN, ENVELOPE PROTEIN, MEMBRANE FUSION, KEYWDS 2 VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.ROCHE,S.BRESSANELLI REVDAT 3 10-JAN-24 5I2S 1 HETSYN REVDAT 2 29-JUL-20 5I2S 1 COMPND REMARK HETNAM LINK REVDAT 2 2 1 SITE ATOM REVDAT 1 02-MAR-16 5I2S 0 SPRSDE 02-MAR-16 5I2S 2J6J 2J6J JRNL AUTH S.ROCHE,F.A.REY,Y.GAUDIN,S.BRESSANELLI JRNL TITL STRUCTURE OF THE PREFUSION FORM OF THE VESICULAR STOMATITIS JRNL TITL 2 VIRUS GLYCOPROTEIN G. JRNL REF SCIENCE V. 315 843 2007 JRNL REFN ESSN 1095-9203 JRNL PMID 17289996 JRNL DOI 10.1126/SCIENCE.1135710 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 14.94 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 16104 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 816 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 14.9421 - 5.3804 0.99 2739 129 0.1503 0.1849 REMARK 3 2 5.3804 - 4.3042 1.00 2583 129 0.1426 0.1744 REMARK 3 3 4.3042 - 3.7701 1.00 2546 140 0.1626 0.2254 REMARK 3 4 3.7701 - 3.4300 1.00 2518 137 0.2117 0.2921 REMARK 3 5 3.4300 - 3.1867 0.99 2483 129 0.2488 0.3426 REMARK 3 6 3.1867 - 3.0004 0.98 2419 152 0.2854 0.3498 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.440 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.780 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3415 REMARK 3 ANGLE : 0.907 4659 REMARK 3 CHIRALITY : 0.054 501 REMARK 3 PLANARITY : 0.005 592 REMARK 3 DIHEDRAL : 13.675 2002 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESSEQ 1:17) OR (CHAIN A AND RESSEQ REMARK 3 310:382) OR (CHAIN A AND RESSEQ 1416:1416) REMARK 3 ORIGIN FOR THE GROUP (A): 4.5635 45.0226 58.9640 REMARK 3 T TENSOR REMARK 3 T11: 0.3248 T22: 0.2961 REMARK 3 T33: 0.5530 T12: 0.0266 REMARK 3 T13: 0.0902 T23: 0.0098 REMARK 3 L TENSOR REMARK 3 L11: 5.7256 L22: 2.4597 REMARK 3 L33: 1.4652 L12: 0.8447 REMARK 3 L13: -0.2174 L23: -1.1561 REMARK 3 S TENSOR REMARK 3 S11: -0.2028 S12: -0.0829 S13: -0.8570 REMARK 3 S21: -0.1676 S22: 0.1054 S23: -0.4084 REMARK 3 S31: 0.2270 S32: 0.1811 S33: 0.1078 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESSEQ 36:46) OR (CHAIN A AND RESSEQ REMARK 3 181:258) OR (CHAIN A AND RESSEQ 1418:1418) REMARK 3 ORIGIN FOR THE GROUP (A): -13.7790 46.5456 83.5530 REMARK 3 T TENSOR REMARK 3 T11: 0.3311 T22: 0.5335 REMARK 3 T33: 0.3337 T12: -0.0256 REMARK 3 T13: 0.0383 T23: 0.1014 REMARK 3 L TENSOR REMARK 3 L11: 4.5546 L22: 3.0111 REMARK 3 L33: 3.9421 L12: 1.3851 REMARK 3 L13: -1.5058 L23: -0.2871 REMARK 3 S TENSOR REMARK 3 S11: 0.2760 S12: -0.4344 S13: -0.0088 REMARK 3 S21: 0.1125 S22: -0.1851 S23: 0.0432 REMARK 3 S31: 0.0356 S32: 0.1388 S33: -0.0724 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESSEQ 53:59) OR (CHAIN A AND RESSEQ REMARK 3 130:172) OR (CHAIN A AND RESSEQ 1414:1415) REMARK 3 ORIGIN FOR THE GROUP (A): -18.5672 41.5864 53.7956 REMARK 3 T TENSOR REMARK 3 T11: 0.3112 T22: 0.3702 REMARK 3 T33: 0.4963 T12: -0.0549 REMARK 3 T13: 0.1235 T23: -0.0783 REMARK 3 L TENSOR REMARK 3 L11: 4.4400 L22: 2.8719 REMARK 3 L33: 8.0215 L12: 1.0587 REMARK 3 L13: 0.2644 L23: 1.2177 REMARK 3 S TENSOR REMARK 3 S11: -0.0295 S12: 0.2286 S13: -0.4489 REMARK 3 S21: -0.3140 S22: 0.0328 S23: -0.2893 REMARK 3 S31: 0.2209 S32: -0.1880 S33: 0.0386 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESSEQ 60:129) REMARK 3 ORIGIN FOR THE GROUP (A): -21.0739 41.8831 26.4262 REMARK 3 T TENSOR REMARK 3 T11: 1.4831 T22: 1.4989 REMARK 3 T33: 0.6717 T12: -0.0082 REMARK 3 T13: 0.1262 T23: -0.1484 REMARK 3 L TENSOR REMARK 3 L11: 2.3504 L22: 1.1155 REMARK 3 L33: 0.5965 L12: 0.1808 REMARK 3 L13: -0.4749 L23: 0.5928 REMARK 3 S TENSOR REMARK 3 S11: 0.5223 S12: 1.4734 S13: 0.0801 REMARK 3 S21: -1.8096 S22: -0.4231 S23: 0.5261 REMARK 3 S31: 0.4907 S32: -0.7283 S33: 0.0127 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESSEQ 18:25) OR (CHAIN A AND RESSEQ REMARK 3 274:309) OR (CHAIN A AND RESSEQ 1417:1417) REMARK 3 ORIGIN FOR THE GROUP (A): -4.0757 59.6439 54.7408 REMARK 3 T TENSOR REMARK 3 T11: 0.2477 T22: 0.3405 REMARK 3 T33: 0.3733 T12: 0.0073 REMARK 3 T13: 0.0078 T23: -0.0201 REMARK 3 L TENSOR REMARK 3 L11: 2.7686 L22: 3.8450 REMARK 3 L33: 3.6098 L12: -0.0925 REMARK 3 L13: -1.5093 L23: 0.8037 REMARK 3 S TENSOR REMARK 3 S11: -0.2114 S12: 0.3527 S13: -0.2844 REMARK 3 S21: -0.2438 S22: -0.1561 S23: 0.5161 REMARK 3 S31: -0.1654 S32: -0.0869 S33: 0.3742 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESSEQ 47:52) REMARK 3 ORIGIN FOR THE GROUP (A): -10.6983 34.4141 67.5236 REMARK 3 T TENSOR REMARK 3 T11: 0.9918 T22: 0.5536 REMARK 3 T33: 0.8229 T12: 0.1777 REMARK 3 T13: 0.1561 T23: -0.0671 REMARK 3 L TENSOR REMARK 3 L11: 3.0385 L22: 4.2665 REMARK 3 L33: 6.1976 L12: 3.2695 REMARK 3 L13: 3.7846 L23: 5.1244 REMARK 3 S TENSOR REMARK 3 S11: 0.5558 S12: 0.0900 S13: -1.2173 REMARK 3 S21: 0.0569 S22: 0.2457 S23: 0.0754 REMARK 3 S31: 0.2425 S32: 0.6760 S33: -0.8302 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESSEQ 173:180) REMARK 3 ORIGIN FOR THE GROUP (A): -18.3848 29.3925 70.4986 REMARK 3 T TENSOR REMARK 3 T11: 1.3428 T22: 0.6708 REMARK 3 T33: 1.3457 T12: -0.1509 REMARK 3 T13: 0.0986 T23: -0.0872 REMARK 3 L TENSOR REMARK 3 L11: 0.0076 L22: 0.0003 REMARK 3 L33: 0.0221 L12: 0.0015 REMARK 3 L13: 0.0045 L23: 0.0043 REMARK 3 S TENSOR REMARK 3 S11: 0.6658 S12: -0.2824 S13: -0.3618 REMARK 3 S21: 0.4108 S22: 0.2591 S23: 0.0249 REMARK 3 S31: 0.6835 S32: -0.1969 S33: -0.8058 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESSEQ 259:273) REMARK 3 ORIGIN FOR THE GROUP (A): -12.5134 54.9046 70.0653 REMARK 3 T TENSOR REMARK 3 T11: 0.4179 T22: 0.3707 REMARK 3 T33: 0.4270 T12: 0.0935 REMARK 3 T13: -0.0264 T23: 0.0464 REMARK 3 L TENSOR REMARK 3 L11: 1.4727 L22: 0.9823 REMARK 3 L33: 3.0484 L12: -0.4180 REMARK 3 L13: -0.6019 L23: -1.3560 REMARK 3 S TENSOR REMARK 3 S11: -0.1592 S12: 0.0982 S13: 0.0751 REMARK 3 S21: 0.1231 S22: 0.2497 S23: 0.4234 REMARK 3 S31: -0.3254 S32: 0.0468 S33: -0.1410 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN A AND RESSEQ 26:35) REMARK 3 ORIGIN FOR THE GROUP (A): -3.1745 58.5929 75.3435 REMARK 3 T TENSOR REMARK 3 T11: 0.4909 T22: 0.5765 REMARK 3 T33: 0.4411 T12: -0.1044 REMARK 3 T13: -0.0206 T23: -0.0995 REMARK 3 L TENSOR REMARK 3 L11: 4.9888 L22: 6.2177 REMARK 3 L33: 9.6348 L12: -2.5120 REMARK 3 L13: -0.4802 L23: -2.0676 REMARK 3 S TENSOR REMARK 3 S11: 0.3594 S12: -0.8894 S13: 1.0395 REMARK 3 S21: 0.7051 S22: -0.4669 S23: -0.7815 REMARK 3 S31: 0.0386 S32: 0.5205 S33: 0.0267 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN A AND RESSEQ 383:405) REMARK 3 ORIGIN FOR THE GROUP (A): 8.8053 56.8537 52.2620 REMARK 3 T TENSOR REMARK 3 T11: 0.3321 T22: 0.4020 REMARK 3 T33: 0.3511 T12: 0.0389 REMARK 3 T13: 0.0096 T23: -0.0184 REMARK 3 L TENSOR REMARK 3 L11: 7.1738 L22: 3.7932 REMARK 3 L33: 4.9513 L12: 1.9101 REMARK 3 L13: 2.0431 L23: 1.4924 REMARK 3 S TENSOR REMARK 3 S11: -0.1782 S12: 0.8398 S13: -0.3651 REMARK 3 S21: -0.5485 S22: 0.2415 S23: -0.2269 REMARK 3 S31: 0.2182 S32: 0.4289 S33: -0.0553 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN A AND RESSEQ 406:413) REMARK 3 ORIGIN FOR THE GROUP (A): -11.5606 47.0834 36.3062 REMARK 3 T TENSOR REMARK 3 T11: 1.3921 T22: 1.4725 REMARK 3 T33: 0.9331 T12: -0.0455 REMARK 3 T13: -0.2377 T23: -0.1521 REMARK 3 L TENSOR REMARK 3 L11: 1.0154 L22: 0.0355 REMARK 3 L33: 7.3511 L12: 0.1891 REMARK 3 L13: -2.7128 L23: -0.5103 REMARK 3 S TENSOR REMARK 3 S11: -0.5334 S12: -0.0535 S13: 0.0441 REMARK 3 S21: -0.3861 S22: 0.2201 S23: -0.1376 REMARK 3 S31: -0.4086 S32: -0.4319 S33: 0.3265 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5I2S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-FEB-16. REMARK 100 THE DEPOSITION ID IS D_1000218156. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JAN-05 REMARK 200 TEMPERATURE (KELVIN) : 120 REMARK 200 PH : 8.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.3861 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16104 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 45.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.6 REMARK 200 DATA REDUNDANCY IN SHELL : 1.90 REMARK 200 R MERGE FOR SHELL (I) : 0.50000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2CMZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS PH 8.7, NANO3 0.4M, PEG 4000 REMARK 280 24%, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 6 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z REMARK 290 6555 X-Y,X,Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 55900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 60.25500 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 104.36472 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -60.25500 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 104.36472 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 YB YB A 504 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 414 REMARK 465 SER A 415 REMARK 465 GLN A 416 REMARK 465 LEU A 417 REMARK 465 PRO A 418 REMARK 465 ASP A 419 REMARK 465 ASP A 420 REMARK 465 GLU A 421 REMARK 465 SER A 422 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O SER A 207 NH1 ARG A 332 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 34 -123.96 54.04 REMARK 500 ALA A 51 34.00 -90.67 REMARK 500 PRO A 107 2.09 -65.30 REMARK 500 LYS A 174 -146.07 -71.26 REMARK 500 PRO A 254 158.66 -47.84 REMARK 500 ASN A 320 -120.08 39.34 REMARK 500 MET A 343 69.63 -65.92 REMARK 500 ASP A 358 52.53 -162.14 REMARK 500 GLU A 364 75.01 47.14 REMARK 500 ASP A 365 27.19 47.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 YB A 505 YB REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 191 OE1 REMARK 620 2 GLU A 191 OE2 42.4 REMARK 620 3 GLU A 191 OE1 0.0 42.4 REMARK 620 4 GLU A 191 OE2 42.4 0.0 42.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 YB A 504 YB REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 286 OE1 REMARK 620 2 GLU A 286 OE2 43.8 REMARK 620 3 GLU A 286 OE1 0.0 43.8 REMARK 620 4 GLU A 286 OE2 43.8 0.0 43.8 REMARK 620 N 1 2 3 DBREF 5I2S A 1 422 UNP P0C2X0 VGLG_VSIVM 1 422 SEQADV 5I2S LEU A 41 UNP P0C2X0 ILE 41 CONFLICT SEQADV 5I2S HIS A 80 UNP P0C2X0 GLN 80 CONFLICT SEQRES 1 A 422 LYS PHE THR ILE VAL PHE PRO HIS ASN GLN LYS GLY ASN SEQRES 2 A 422 TRP LYS ASN VAL PRO SER ASN TYR HIS TYR CYS PRO SER SEQRES 3 A 422 SER SER ASP LEU ASN TRP HIS ASN ASP LEU ILE GLY THR SEQRES 4 A 422 ALA LEU GLN VAL LYS MET PRO LYS SER HIS LYS ALA ILE SEQRES 5 A 422 GLN ALA ASP GLY TRP MET CYS HIS ALA SER LYS TRP VAL SEQRES 6 A 422 THR THR CYS ASP PHE ARG TRP TYR GLY PRO LYS TYR ILE SEQRES 7 A 422 THR HIS SER ILE ARG SER PHE THR PRO SER VAL GLU GLN SEQRES 8 A 422 CYS LYS GLU SER ILE GLU GLN THR LYS GLN GLY THR TRP SEQRES 9 A 422 LEU ASN PRO GLY PHE PRO PRO GLN SER CYS GLY TYR ALA SEQRES 10 A 422 THR VAL THR ASP ALA GLU ALA VAL ILE VAL GLN VAL THR SEQRES 11 A 422 PRO HIS HIS VAL LEU VAL ASP GLU TYR THR GLY GLU TRP SEQRES 12 A 422 VAL ASP SER GLN PHE ILE ASN GLY LYS CYS SER ASN TYR SEQRES 13 A 422 ILE CYS PRO THR VAL HIS ASN SER THR THR TRP HIS SER SEQRES 14 A 422 ASP TYR LYS VAL LYS GLY LEU CYS ASP SER ASN LEU ILE SEQRES 15 A 422 SER MET ASP ILE THR PHE PHE SER GLU ASP GLY GLU LEU SEQRES 16 A 422 SER SER LEU GLY LYS GLU GLY THR GLY PHE ARG SER ASN SEQRES 17 A 422 TYR PHE ALA TYR GLU THR GLY GLY LYS ALA CYS LYS MET SEQRES 18 A 422 GLN TYR CYS LYS HIS TRP GLY VAL ARG LEU PRO SER GLY SEQRES 19 A 422 VAL TRP PHE GLU MET ALA ASP LYS ASP LEU PHE ALA ALA SEQRES 20 A 422 ALA ARG PHE PRO GLU CYS PRO GLU GLY SER SER ILE SER SEQRES 21 A 422 ALA PRO SER GLN THR SER VAL ASP VAL SER LEU ILE GLN SEQRES 22 A 422 ASP VAL GLU ARG ILE LEU ASP TYR SER LEU CYS GLN GLU SEQRES 23 A 422 THR TRP SER LYS ILE ARG ALA GLY LEU PRO ILE SER PRO SEQRES 24 A 422 VAL ASP LEU SER TYR LEU ALA PRO LYS ASN PRO GLY THR SEQRES 25 A 422 GLY PRO ALA PHE THR ILE ILE ASN GLY THR LEU LYS TYR SEQRES 26 A 422 PHE GLU THR ARG TYR ILE ARG VAL ASP ILE ALA ALA PRO SEQRES 27 A 422 ILE LEU SER ARG MET VAL GLY MET ILE SER GLY THR THR SEQRES 28 A 422 THR GLU ARG GLU LEU TRP ASP ASP TRP ALA PRO TYR GLU SEQRES 29 A 422 ASP VAL GLU ILE GLY PRO ASN GLY VAL LEU ARG THR SER SEQRES 30 A 422 SER GLY TYR LYS PHE PRO LEU TYR MET ILE GLY HIS GLY SEQRES 31 A 422 MET LEU ASP SER ASP LEU HIS LEU SER SER LYS ALA GLN SEQRES 32 A 422 VAL PHE GLU HIS PRO HIS ILE GLN ASP ALA ALA SER GLN SEQRES 33 A 422 LEU PRO ASP ASP GLU SER HET NAG B 1 14 HET NAG B 2 14 HET NAG A 503 14 HET YB A 504 1 HET YB A 505 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM YB YTTERBIUM (III) ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 2 NAG 3(C8 H15 N O6) FORMUL 4 YB 2(YB 3+) HELIX 1 AA1 SER A 88 GLN A 101 1 14 HELIX 2 AA2 PHE A 148 ASN A 150 5 3 HELIX 3 AA3 GLU A 194 LEU A 198 5 5 HELIX 4 AA4 ASP A 241 ARG A 249 1 9 HELIX 5 AA5 ASP A 268 ILE A 272 5 5 HELIX 6 AA6 GLN A 273 ALA A 293 1 21 HELIX 7 AA7 SER A 298 TYR A 304 1 7 HELIX 8 AA8 PRO A 370 GLY A 372 5 3 HELIX 9 AA9 PHE A 382 ILE A 387 1 6 HELIX 10 AB1 ASP A 393 HIS A 397 5 5 SHEET 1 AA1 3 PHE A 2 PRO A 7 0 SHEET 2 AA1 3 THR A 322 ILE A 335 -1 O VAL A 333 N ILE A 4 SHEET 3 AA1 3 GLY A 311 ILE A 319 -1 N THR A 317 O LYS A 324 SHEET 1 AA2 4 LYS A 15 ASN A 16 0 SHEET 2 AA2 4 THR A 322 ILE A 335 -1 O TYR A 325 N LYS A 15 SHEET 3 AA2 4 VAL A 344 ILE A 347 -1 O MET A 346 N ASP A 334 SHEET 4 AA2 4 GLU A 353 GLU A 355 -1 O ARG A 354 N GLY A 345 SHEET 1 AA3 6 GLY A 204 ARG A 206 0 SHEET 2 AA3 6 ILE A 182 SER A 190 -1 N THR A 187 O ARG A 206 SHEET 3 AA3 6 ILE A 37 MET A 45 -1 N ILE A 37 O SER A 190 SHEET 4 AA3 6 TRP A 236 MET A 239 -1 O GLU A 238 N LYS A 44 SHEET 5 AA3 6 HIS A 226 ARG A 230 -1 N VAL A 229 O PHE A 237 SHEET 6 AA3 6 CYS A 219 TYR A 223 -1 N CYS A 219 O ARG A 230 SHEET 1 AA4 4 GLN A 53 ALA A 54 0 SHEET 2 AA4 4 VAL A 134 VAL A 136 -1 O VAL A 134 N ALA A 54 SHEET 3 AA4 4 TRP A 143 VAL A 144 -1 O VAL A 144 N LEU A 135 SHEET 4 AA4 4 LYS A 152 CYS A 153 -1 O CYS A 153 N TRP A 143 SHEET 1 AA5 3 LYS A 76 PHE A 85 0 SHEET 2 AA5 3 GLY A 56 PHE A 70 -1 N THR A 67 O THR A 79 SHEET 3 AA5 3 THR A 120 PRO A 131 -1 O ALA A 122 N THR A 66 SHEET 1 AA6 4 LYS A 76 PHE A 85 0 SHEET 2 AA6 4 GLY A 56 PHE A 70 -1 N THR A 67 O THR A 79 SHEET 3 AA6 4 THR A 166 SER A 169 -1 O THR A 166 N CYS A 59 SHEET 4 AA6 4 ILE A 157 PRO A 159 -1 N CYS A 158 O TRP A 167 SHEET 1 AA7 5 ILE A 339 LEU A 340 0 SHEET 2 AA7 5 GLY A 379 LYS A 381 -1 O TYR A 380 N LEU A 340 SHEET 3 AA7 5 LEU A 374 THR A 376 -1 N LEU A 374 O LYS A 381 SHEET 4 AA7 5 VAL A 366 ILE A 368 -1 N GLU A 367 O ARG A 375 SHEET 5 AA7 5 ALA A 361 TYR A 363 -1 N TYR A 363 O VAL A 366 SSBOND 1 CYS A 24 CYS A 284 1555 1555 2.05 SSBOND 2 CYS A 59 CYS A 92 1555 1555 2.04 SSBOND 3 CYS A 68 CYS A 114 1555 1555 2.03 SSBOND 4 CYS A 153 CYS A 158 1555 1555 2.05 SSBOND 5 CYS A 177 CYS A 224 1555 1555 2.03 SSBOND 6 CYS A 219 CYS A 253 1555 1555 2.03 LINK ND2 ASN A 163 C1 NAG B 1 1555 1555 1.44 LINK ND2 ASN A 320 C1 NAG A 503 1555 1555 1.44 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.43 LINK OE1 GLU A 191 YB YB A 505 1555 1555 2.79 LINK OE2 GLU A 191 YB YB A 505 1555 1555 3.20 LINK OE1 GLU A 191 YB YB A 505 1555 12566 3.03 LINK OE2 GLU A 191 YB YB A 505 1555 12566 3.21 LINK OE1 GLU A 286 YB YB A 504 1555 1555 3.17 LINK OE2 GLU A 286 YB YB A 504 1555 1555 2.42 LINK OE1 GLU A 286 YB YB A 504 1555 2665 3.15 LINK OE2 GLU A 286 YB YB A 504 1555 2665 2.41 CRYST1 120.510 120.510 183.130 90.00 90.00 120.00 P 6 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008298 0.004791 0.000000 0.00000 SCALE2 0.000000 0.009582 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005461 0.00000