PDB Short entry for 5I5H HEADER MEMBRANE PROTEIN 15-FEB-16 5I5H TITLE ECOLI GLOBAL DOMAIN 245-586 COMPND MOL_ID: 1; COMPND 2 MOLECULE: INNER MEMBRANE PROTEIN YEJM; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI (STRAIN K12); SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: YEJM, YEJN, B2188, JW2176; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS ECOLI 245-586, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.DONG,H.DONG REVDAT 2 10-JAN-24 5I5H 1 ATOM REVDAT 1 17-AUG-16 5I5H 0 JRNL AUTH H.DONG,Z.ZHANG,X.TANG,S.HUANG,H.LI,B.PENG,C.DONG JRNL TITL STRUCTURAL INSIGHTS INTO CARDIOLIPIN TRANSFER FROM THE INNER JRNL TITL 2 MEMBRANE TO THE OUTER MEMBRANE BY PBGA IN GRAM-NEGATIVE JRNL TITL 3 BACTERIA. JRNL REF SCI REP V. 6 30815 2016 JRNL REFN ESSN 2045-2322 JRNL PMID 27487745 JRNL DOI 10.1038/SREP30815 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 41797 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2208 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2781 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.43 REMARK 3 BIN R VALUE (WORKING SET) : 0.4440 REMARK 3 BIN FREE R VALUE SET COUNT : 139 REMARK 3 BIN FREE R VALUE : 0.4540 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2604 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 495 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 25.61000 REMARK 3 B22 (A**2) : 25.61000 REMARK 3 B33 (A**2) : -51.21000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.030 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.023 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.062 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.040 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.973 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2690 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2478 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3659 ; 1.756 ; 1.937 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5670 ; 1.059 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 329 ; 6.957 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 138 ;33.620 ;23.986 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 434 ;13.565 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;19.532 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 399 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3127 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 676 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1319 ; 2.239 ; 2.564 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1318 ; 2.216 ; 2.561 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1647 ; 2.350 ; 3.836 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1648 ; 2.357 ; 3.839 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1371 ; 2.575 ; 3.003 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1372 ; 2.575 ; 3.003 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2013 ; 2.650 ; 4.330 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3585 ; 5.100 ;24.383 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3292 ; 3.903 ;22.556 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 5167 ; 2.159 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 136 ;32.132 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 5478 ;10.546 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 246 A 575 REMARK 3 ORIGIN FOR THE GROUP (A): 0.8526 37.5764 14.0851 REMARK 3 T TENSOR REMARK 3 T11: 0.0310 T22: 0.0381 REMARK 3 T33: 0.2200 T12: -0.0262 REMARK 3 T13: -0.0090 T23: 0.0120 REMARK 3 L TENSOR REMARK 3 L11: 0.1260 L22: 0.4988 REMARK 3 L33: 0.2798 L12: -0.0594 REMARK 3 L13: 0.0286 L23: 0.0995 REMARK 3 S TENSOR REMARK 3 S11: 0.0133 S12: -0.0258 S13: -0.0056 REMARK 3 S21: -0.0243 S22: -0.0232 S23: 0.0370 REMARK 3 S31: 0.0081 S32: 0.0248 S33: 0.0099 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 576 B 1084 REMARK 3 ORIGIN FOR THE GROUP (A): 0.6380 37.1220 13.2541 REMARK 3 T TENSOR REMARK 3 T11: 0.0467 T22: 0.0458 REMARK 3 T33: 0.2233 T12: -0.0347 REMARK 3 T13: -0.0030 T23: 0.0147 REMARK 3 L TENSOR REMARK 3 L11: 0.2320 L22: 0.3625 REMARK 3 L33: 0.1292 L12: -0.0502 REMARK 3 L13: 0.0351 L23: 0.0851 REMARK 3 S TENSOR REMARK 3 S11: -0.0092 S12: -0.0415 S13: -0.0368 REMARK 3 S21: -0.0447 S22: -0.0080 S23: 0.0203 REMARK 3 S31: -0.0103 S32: -0.0025 S33: 0.0172 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5I5H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-FEB-16. REMARK 100 THE DEPOSITION ID IS D_1000218300. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-OCT-15 REMARK 200 TEMPERATURE (KELVIN) : 193 REMARK 200 PH : 4.0-4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9798 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 47.830 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 9.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.71 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 9.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5I5D REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M LITHIUM SULPHATE, 0.1 M SODIUM REMARK 280 ACETATE PH 4.3 AND 48% PEG400, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 310K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.93667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 127.87333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 127.87333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 63.93667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 820 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 974 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 VAL A 2 REMARK 465 THR A 3 REMARK 465 HIS A 4 REMARK 465 ARG A 5 REMARK 465 GLN A 6 REMARK 465 ARG A 7 REMARK 465 TYR A 8 REMARK 465 ARG A 9 REMARK 465 GLU A 10 REMARK 465 LYS A 11 REMARK 465 VAL A 12 REMARK 465 SER A 13 REMARK 465 GLN A 14 REMARK 465 MET A 15 REMARK 465 VAL A 16 REMARK 465 SER A 17 REMARK 465 TRP A 18 REMARK 465 GLY A 19 REMARK 465 HIS A 20 REMARK 465 TRP A 21 REMARK 465 PHE A 22 REMARK 465 ALA A 23 REMARK 465 LEU A 24 REMARK 465 PHE A 25 REMARK 465 ASN A 26 REMARK 465 ILE A 27 REMARK 465 LEU A 28 REMARK 465 LEU A 29 REMARK 465 SER A 30 REMARK 465 LEU A 31 REMARK 465 VAL A 32 REMARK 465 ILE A 33 REMARK 465 GLY A 34 REMARK 465 SER A 35 REMARK 465 ARG A 36 REMARK 465 TYR A 37 REMARK 465 LEU A 38 REMARK 465 PHE A 39 REMARK 465 ILE A 40 REMARK 465 ALA A 41 REMARK 465 ASP A 42 REMARK 465 TRP A 43 REMARK 465 PRO A 44 REMARK 465 THR A 45 REMARK 465 THR A 46 REMARK 465 LEU A 47 REMARK 465 ALA A 48 REMARK 465 GLY A 49 REMARK 465 ARG A 50 REMARK 465 ILE A 51 REMARK 465 TYR A 52 REMARK 465 SER A 53 REMARK 465 TYR A 54 REMARK 465 VAL A 55 REMARK 465 SER A 56 REMARK 465 ILE A 57 REMARK 465 ILE A 58 REMARK 465 GLY A 59 REMARK 465 HIS A 60 REMARK 465 PHE A 61 REMARK 465 SER A 62 REMARK 465 PHE A 63 REMARK 465 LEU A 64 REMARK 465 VAL A 65 REMARK 465 PHE A 66 REMARK 465 ALA A 67 REMARK 465 THR A 68 REMARK 465 TYR A 69 REMARK 465 LEU A 70 REMARK 465 LEU A 71 REMARK 465 ILE A 72 REMARK 465 LEU A 73 REMARK 465 PHE A 74 REMARK 465 PRO A 75 REMARK 465 LEU A 76 REMARK 465 THR A 77 REMARK 465 PHE A 78 REMARK 465 ILE A 79 REMARK 465 VAL A 80 REMARK 465 GLY A 81 REMARK 465 SER A 82 REMARK 465 GLN A 83 REMARK 465 ARG A 84 REMARK 465 LEU A 85 REMARK 465 MET A 86 REMARK 465 ARG A 87 REMARK 465 PHE A 88 REMARK 465 LEU A 89 REMARK 465 SER A 90 REMARK 465 VAL A 91 REMARK 465 ILE A 92 REMARK 465 LEU A 93 REMARK 465 ALA A 94 REMARK 465 THR A 95 REMARK 465 ALA A 96 REMARK 465 GLY A 97 REMARK 465 MET A 98 REMARK 465 THR A 99 REMARK 465 LEU A 100 REMARK 465 LEU A 101 REMARK 465 LEU A 102 REMARK 465 ILE A 103 REMARK 465 ASP A 104 REMARK 465 SER A 105 REMARK 465 GLU A 106 REMARK 465 VAL A 107 REMARK 465 PHE A 108 REMARK 465 THR A 109 REMARK 465 ARG A 110 REMARK 465 PHE A 111 REMARK 465 HIS A 112 REMARK 465 LEU A 113 REMARK 465 HIS A 114 REMARK 465 LEU A 115 REMARK 465 ASN A 116 REMARK 465 PRO A 117 REMARK 465 ILE A 118 REMARK 465 VAL A 119 REMARK 465 TRP A 120 REMARK 465 GLN A 121 REMARK 465 LEU A 122 REMARK 465 VAL A 123 REMARK 465 ILE A 124 REMARK 465 ASN A 125 REMARK 465 PRO A 126 REMARK 465 ASP A 127 REMARK 465 GLU A 128 REMARK 465 ASN A 129 REMARK 465 GLU A 130 REMARK 465 MET A 131 REMARK 465 ALA A 132 REMARK 465 ARG A 133 REMARK 465 ASP A 134 REMARK 465 TRP A 135 REMARK 465 GLN A 136 REMARK 465 LEU A 137 REMARK 465 MET A 138 REMARK 465 PHE A 139 REMARK 465 ILE A 140 REMARK 465 SER A 141 REMARK 465 VAL A 142 REMARK 465 PRO A 143 REMARK 465 VAL A 144 REMARK 465 ILE A 145 REMARK 465 LEU A 146 REMARK 465 LEU A 147 REMARK 465 LEU A 148 REMARK 465 GLU A 149 REMARK 465 LEU A 150 REMARK 465 VAL A 151 REMARK 465 PHE A 152 REMARK 465 ALA A 153 REMARK 465 THR A 154 REMARK 465 TRP A 155 REMARK 465 SER A 156 REMARK 465 TRP A 157 REMARK 465 GLN A 158 REMARK 465 LYS A 159 REMARK 465 LEU A 160 REMARK 465 ARG A 161 REMARK 465 SER A 162 REMARK 465 LEU A 163 REMARK 465 THR A 164 REMARK 465 ARG A 165 REMARK 465 ARG A 166 REMARK 465 ARG A 167 REMARK 465 ARG A 168 REMARK 465 PHE A 169 REMARK 465 ALA A 170 REMARK 465 ARG A 171 REMARK 465 PRO A 172 REMARK 465 LEU A 173 REMARK 465 ALA A 174 REMARK 465 ALA A 175 REMARK 465 PHE A 176 REMARK 465 LEU A 177 REMARK 465 PHE A 178 REMARK 465 ILE A 179 REMARK 465 ALA A 180 REMARK 465 PHE A 181 REMARK 465 ILE A 182 REMARK 465 ALA A 183 REMARK 465 SER A 184 REMARK 465 HIS A 185 REMARK 465 VAL A 186 REMARK 465 VAL A 187 REMARK 465 TYR A 188 REMARK 465 ILE A 189 REMARK 465 TRP A 190 REMARK 465 ALA A 191 REMARK 465 ASP A 192 REMARK 465 ALA A 193 REMARK 465 ASN A 194 REMARK 465 PHE A 195 REMARK 465 TYR A 196 REMARK 465 ARG A 197 REMARK 465 PRO A 198 REMARK 465 ILE A 199 REMARK 465 THR A 200 REMARK 465 MET A 201 REMARK 465 GLN A 202 REMARK 465 ARG A 203 REMARK 465 ALA A 204 REMARK 465 ASN A 205 REMARK 465 LEU A 206 REMARK 465 PRO A 207 REMARK 465 LEU A 208 REMARK 465 SER A 209 REMARK 465 TYR A 210 REMARK 465 PRO A 211 REMARK 465 MET A 212 REMARK 465 THR A 213 REMARK 465 ALA A 214 REMARK 465 ARG A 215 REMARK 465 ARG A 216 REMARK 465 PHE A 217 REMARK 465 LEU A 218 REMARK 465 GLU A 219 REMARK 465 LYS A 220 REMARK 465 HIS A 221 REMARK 465 GLY A 222 REMARK 465 LEU A 223 REMARK 465 LEU A 224 REMARK 465 ASP A 225 REMARK 465 ALA A 226 REMARK 465 GLN A 227 REMARK 465 GLU A 228 REMARK 465 TYR A 229 REMARK 465 GLN A 230 REMARK 465 ARG A 231 REMARK 465 ARG A 232 REMARK 465 LEU A 233 REMARK 465 ILE A 234 REMARK 465 GLU A 235 REMARK 465 GLN A 236 REMARK 465 GLY A 237 REMARK 465 ASN A 238 REMARK 465 PRO A 239 REMARK 465 ASP A 240 REMARK 465 ALA A 241 REMARK 465 VAL A 242 REMARK 465 SER A 243 REMARK 465 VAL A 244 REMARK 465 GLN A 245 REMARK 465 LEU A 573 REMARK 465 LEU A 574 REMARK 465 GLN A 575 REMARK 465 VAL A 576 REMARK 465 LEU A 577 REMARK 465 THR A 578 REMARK 465 ASP A 579 REMARK 465 GLU A 580 REMARK 465 LYS A 581 REMARK 465 ARG A 582 REMARK 465 PHE A 583 REMARK 465 ILE A 584 REMARK 465 ALA A 585 REMARK 465 ASN A 586 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 607 O HOH A 983 1.77 REMARK 500 O HOH A 642 O HOH A 913 1.90 REMARK 500 O HOH A 823 O HOH A 898 2.04 REMARK 500 O HOH A 901 O HOH A 925 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 863 O HOH A 863 4555 1.33 REMARK 500 O HOH A 795 O HOH A 983 4555 1.65 REMARK 500 O HOH A 1076 O HOH A 1076 4555 2.05 REMARK 500 CG LYS A 567 CG LYS A 567 6555 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 247 C - N - CA ANGL. DEV. = -9.6 DEGREES REMARK 500 PRO A 568 C - N - CD ANGL. DEV. = 14.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 255 -169.64 -166.75 REMARK 500 ASN A 289 -151.23 -138.01 REMARK 500 ARG A 294 53.09 -142.14 REMARK 500 ALA A 357 -62.39 -147.58 REMARK 500 PHE A 362 56.11 -105.22 REMARK 500 ASN A 391 -98.43 -86.59 REMARK 500 ASN A 400 10.05 -141.55 REMARK 500 ASP A 405 53.06 -109.41 REMARK 500 ASP A 517 115.90 -27.31 REMARK 500 LEU A 518 -39.79 -38.37 REMARK 500 LYS A 567 115.00 99.17 REMARK 500 GLN A 569 49.75 80.09 REMARK 500 SER A 571 -130.69 44.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1078 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH A1079 DISTANCE = 5.88 ANGSTROMS REMARK 525 HOH A1080 DISTANCE = 5.99 ANGSTROMS REMARK 525 HOH A1081 DISTANCE = 6.34 ANGSTROMS REMARK 525 HOH A1082 DISTANCE = 6.43 ANGSTROMS REMARK 525 HOH A1083 DISTANCE = 6.43 ANGSTROMS REMARK 525 HOH A1084 DISTANCE = 6.46 ANGSTROMS REMARK 525 HOH A1085 DISTANCE = 6.51 ANGSTROMS REMARK 525 HOH A1086 DISTANCE = 6.76 ANGSTROMS REMARK 525 HOH A1087 DISTANCE = 6.98 ANGSTROMS REMARK 525 HOH A1088 DISTANCE = 7.01 ANGSTROMS REMARK 525 HOH A1089 DISTANCE = 7.13 ANGSTROMS REMARK 525 HOH A1090 DISTANCE = 7.22 ANGSTROMS REMARK 525 HOH A1091 DISTANCE = 7.67 ANGSTROMS REMARK 525 HOH A1092 DISTANCE = 7.81 ANGSTROMS REMARK 525 HOH A1093 DISTANCE = 7.91 ANGSTROMS REMARK 525 HOH A1094 DISTANCE = 8.52 ANGSTROMS REMARK 525 HOH A1095 DISTANCE = 8.81 ANGSTROMS DBREF 5I5H A 1 586 UNP P0AD27 YEJM_ECOLI 1 586 SEQRES 1 A 586 MET VAL THR HIS ARG GLN ARG TYR ARG GLU LYS VAL SER SEQRES 2 A 586 GLN MET VAL SER TRP GLY HIS TRP PHE ALA LEU PHE ASN SEQRES 3 A 586 ILE LEU LEU SER LEU VAL ILE GLY SER ARG TYR LEU PHE SEQRES 4 A 586 ILE ALA ASP TRP PRO THR THR LEU ALA GLY ARG ILE TYR SEQRES 5 A 586 SER TYR VAL SER ILE ILE GLY HIS PHE SER PHE LEU VAL SEQRES 6 A 586 PHE ALA THR TYR LEU LEU ILE LEU PHE PRO LEU THR PHE SEQRES 7 A 586 ILE VAL GLY SER GLN ARG LEU MET ARG PHE LEU SER VAL SEQRES 8 A 586 ILE LEU ALA THR ALA GLY MET THR LEU LEU LEU ILE ASP SEQRES 9 A 586 SER GLU VAL PHE THR ARG PHE HIS LEU HIS LEU ASN PRO SEQRES 10 A 586 ILE VAL TRP GLN LEU VAL ILE ASN PRO ASP GLU ASN GLU SEQRES 11 A 586 MET ALA ARG ASP TRP GLN LEU MET PHE ILE SER VAL PRO SEQRES 12 A 586 VAL ILE LEU LEU LEU GLU LEU VAL PHE ALA THR TRP SER SEQRES 13 A 586 TRP GLN LYS LEU ARG SER LEU THR ARG ARG ARG ARG PHE SEQRES 14 A 586 ALA ARG PRO LEU ALA ALA PHE LEU PHE ILE ALA PHE ILE SEQRES 15 A 586 ALA SER HIS VAL VAL TYR ILE TRP ALA ASP ALA ASN PHE SEQRES 16 A 586 TYR ARG PRO ILE THR MET GLN ARG ALA ASN LEU PRO LEU SEQRES 17 A 586 SER TYR PRO MET THR ALA ARG ARG PHE LEU GLU LYS HIS SEQRES 18 A 586 GLY LEU LEU ASP ALA GLN GLU TYR GLN ARG ARG LEU ILE SEQRES 19 A 586 GLU GLN GLY ASN PRO ASP ALA VAL SER VAL GLN TYR PRO SEQRES 20 A 586 LEU SER GLU LEU ARG TYR ARG ASP MET GLY THR GLY GLN SEQRES 21 A 586 ASN VAL LEU LEU ILE THR VAL ASP GLY LEU ASN TYR SER SEQRES 22 A 586 ARG PHE GLU LYS GLN MET PRO ALA LEU ALA GLY PHE ALA SEQRES 23 A 586 GLU GLN ASN ILE SER PHE THR ARG HIS MET SER SER GLY SEQRES 24 A 586 ASN THR THR ASP ASN GLY ILE PHE GLY LEU PHE TYR GLY SEQRES 25 A 586 ILE SER PRO SER TYR MET ASP GLY ILE LEU SER THR ARG SEQRES 26 A 586 THR PRO ALA ALA LEU ILE THR ALA LEU ASN GLN GLN GLY SEQRES 27 A 586 TYR GLN LEU GLY LEU PHE SER SER ASP GLY PHE THR SER SEQRES 28 A 586 PRO LEU TYR ARG GLN ALA LEU LEU SER ASP PHE SER MET SEQRES 29 A 586 PRO SER VAL ARG THR GLN SER ASP GLU GLN THR ALA THR SEQRES 30 A 586 GLN TRP ILE ASN TRP LEU GLY ARG TYR ALA GLN GLU ASP SEQRES 31 A 586 ASN ARG TRP PHE SER TRP VAL SER PHE ASN GLY THR ASN SEQRES 32 A 586 ILE ASP ASP SER ASN GLN GLN ALA PHE ALA ARG LYS TYR SEQRES 33 A 586 SER ARG ALA ALA GLY ASN VAL ASP ASP GLN ILE ASN ARG SEQRES 34 A 586 VAL LEU ASN ALA LEU ARG ASP SER GLY LYS LEU ASP ASN SEQRES 35 A 586 THR VAL VAL ILE ILE THR ALA GLY ARG GLY ILE PRO LEU SEQRES 36 A 586 SER GLU GLU GLU GLU THR PHE ASP TRP SER HIS GLY HIS SEQRES 37 A 586 LEU GLN VAL PRO LEU VAL ILE HIS TRP PRO GLY THR PRO SEQRES 38 A 586 ALA GLN ARG ILE ASN ALA LEU THR ASP HIS THR ASP LEU SEQRES 39 A 586 MET THR THR LEU MET GLN ARG LEU LEU HIS VAL SER THR SEQRES 40 A 586 PRO ALA SER GLU TYR SER GLN GLY GLN ASP LEU PHE ASN SEQRES 41 A 586 PRO GLN ARG ARG HIS TYR TRP VAL THR ALA ALA ASP ASN SEQRES 42 A 586 ASP THR LEU ALA ILE THR THR PRO LYS LYS THR LEU VAL SEQRES 43 A 586 LEU ASN ASN ASN GLY LYS TYR ARG THR TYR ASN LEU ARG SEQRES 44 A 586 GLY GLU ARG VAL LYS ASP GLU LYS PRO GLN LEU SER LEU SEQRES 45 A 586 LEU LEU GLN VAL LEU THR ASP GLU LYS ARG PHE ILE ALA SEQRES 46 A 586 ASN FORMUL 2 HOH *495(H2 O) HELIX 1 AA1 ARG A 274 MET A 279 1 6 HELIX 2 AA2 MET A 279 GLN A 288 1 10 HELIX 3 AA3 THR A 301 GLY A 312 1 12 HELIX 4 AA4 SER A 314 SER A 316 5 3 HELIX 5 AA5 TYR A 317 THR A 324 1 8 HELIX 6 AA6 ALA A 328 GLN A 337 1 10 HELIX 7 AA7 SER A 351 ALA A 357 1 7 HELIX 8 AA8 ALA A 357 PHE A 362 1 6 HELIX 9 AA9 SER A 371 TYR A 386 1 16 HELIX 10 AB1 ALA A 387 ASP A 390 5 4 HELIX 11 AB2 ASN A 408 SER A 437 1 30 HELIX 12 AB3 SER A 456 THR A 461 5 6 HELIX 13 AB4 SER A 465 GLN A 470 1 6 HELIX 14 AB5 HIS A 491 LEU A 502 1 12 HELIX 15 AB6 PRO A 508 TYR A 512 5 5 SHEET 1 AA1 8 SER A 366 ARG A 368 0 SHEET 2 AA1 8 GLN A 340 SER A 345 1 N LEU A 343 O VAL A 367 SHEET 3 AA1 8 TRP A 393 PHE A 399 1 O SER A 398 N PHE A 344 SHEET 4 AA1 8 VAL A 262 LEU A 270 1 N THR A 266 O PHE A 399 SHEET 5 AA1 8 VAL A 444 GLY A 452 1 O ILE A 446 N ILE A 265 SHEET 6 AA1 8 LEU A 473 HIS A 476 -1 O VAL A 474 N ILE A 447 SHEET 7 AA1 8 ILE A 290 PHE A 292 -1 N ILE A 290 O ILE A 475 SHEET 8 AA1 8 GLN A 483 ILE A 485 1 O ILE A 485 N SER A 291 SHEET 1 AA2 2 HIS A 295 MET A 296 0 SHEET 2 AA2 2 THR A 489 ASP A 490 1 O THR A 489 N MET A 296 SHEET 1 AA3 4 VAL A 528 ALA A 531 0 SHEET 2 AA3 4 THR A 535 THR A 539 -1 O ALA A 537 N ALA A 530 SHEET 3 AA3 4 LYS A 543 ASN A 548 -1 O LEU A 547 N LEU A 536 SHEET 4 AA3 4 TYR A 553 ASN A 557 -1 O ARG A 554 N VAL A 546 CISPEP 1 MET A 364 PRO A 365 0 2.30 CISPEP 2 GLU A 566 LYS A 567 0 0.97 CISPEP 3 LYS A 567 PRO A 568 0 -3.68 CISPEP 4 PRO A 568 GLN A 569 0 -6.33 CISPEP 5 SER A 571 LEU A 572 0 0.01 CRYST1 56.860 56.860 191.810 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017587 0.010154 0.000000 0.00000 SCALE2 0.000000 0.020308 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005213 0.00000