PDB Short entry for 5J13 HEADER IMMUNE SYSTEM 28-MAR-16 5J13 TITLE STRUCTURAL BASIS FOR TSLP ANTAGONISM BY THE THERAPEUTIC ANTIBODY TITLE 2 TEZEPELUMAB (MEDI9929 / AMG-157) COMPND MOL_ID: 1; COMPND 2 MOLECULE: THYMIC STROMAL LYMPHOPOIETIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 OTHER_DETAILS: BEFORE CRYSTALLISATION, THE N-TERMINAL HIS-TAG COMPND 7 (RESIDUES 1 - 17, MGSSHHHHHHSSGLVPR) WAS REMOVED BY THROMBIN COMPND 8 CLEAVAGE. RESIDUES 127 TO 131 OF TSLP (127-RRKRK-131) (ACCORDING TO COMPND 9 THE REFERENCE SEQUENCE NUMBERING SCHEME FOR TSLP) WERE DELETED IN THE COMPND 10 CONSTRUCT USED FOR CRYSTALLIZATION.; COMPND 11 MOL_ID: 2; COMPND 12 MOLECULE: ANTI-TSLP FAB-FRAGMENT, LIGHT CHAIN; COMPND 13 CHAIN: B; COMPND 14 ENGINEERED: YES; COMPND 15 OTHER_DETAILS: THE SIGNAL PEPTIDE (RESIDUES 1 - 28) IS REMOVED FROM COMPND 16 THE MATURE PROTEIN.; COMPND 17 MOL_ID: 3; COMPND 18 MOLECULE: ANTI-TSLP FAB-FRAGMENT, HEAVY CHAIN; COMPND 19 CHAIN: C; COMPND 20 ENGINEERED: YES; COMPND 21 OTHER_DETAILS: THE SIGNAL PEPTIDE (RESIDUES 1 - 28) IS REMOVED FROM COMPND 22 THE MATURE PROTEIN. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TSLP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15B-HTSLPDELTA127-131; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 15 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 17 EXPRESSION_SYSTEM_CELL_LINE: HEK-293T; SOURCE 18 EXPRESSION_SYSTEM_ATCC_NUMBER: CRL-3216; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PHLSEC; SOURCE 21 MOL_ID: 3; SOURCE 22 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 23 ORGANISM_COMMON: HUMAN; SOURCE 24 ORGANISM_TAXID: 9606; SOURCE 25 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 26 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 27 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 28 EXPRESSION_SYSTEM_CELL_LINE: HEK-293T; SOURCE 29 EXPRESSION_SYSTEM_ATCC_NUMBER: CRL-3216; SOURCE 30 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 31 EXPRESSION_SYSTEM_PLASMID: PHLSEC KEYWDS CYTOKINE INFLAMMATION TSLP ANTIBODY, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR K.VERSTRAETE,S.N.SAVVIDES REVDAT 4 10-JAN-24 5J13 1 REMARK REVDAT 3 28-FEB-18 5J13 1 SOURCE REVDAT 2 19-APR-17 5J13 1 JRNL REVDAT 1 05-APR-17 5J13 0 JRNL AUTH K.VERSTRAETE,F.PEELMAN,H.BRAUN,J.LOPEZ,D.VAN ROMPAEY, JRNL AUTH 2 A.DANSERCOER,I.VANDENBERGHE,K.PAUWELS,J.TAVERNIER, JRNL AUTH 3 B.N.LAMBRECHT,H.HAMMAD,H.DE WINTER,R.BEYAERT,G.LIPPENS, JRNL AUTH 4 S.N.SAVVIDES JRNL TITL STRUCTURE AND ANTAGONISM OF THE RECEPTOR COMPLEX MEDIATED BY JRNL TITL 2 HUMAN TSLP IN ALLERGY AND ASTHMA. JRNL REF NAT COMMUN V. 8 14937 2017 JRNL REFN ESSN 2041-1723 JRNL PMID 28368013 JRNL DOI 10.1038/NCOMMS14937 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.80 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.390 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 25275 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1265 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.8045 - 4.7778 1.00 2892 153 0.1609 0.1873 REMARK 3 2 4.7778 - 3.7929 1.00 2794 147 0.1445 0.1852 REMARK 3 3 3.7929 - 3.3136 1.00 2739 144 0.1800 0.2045 REMARK 3 4 3.3136 - 3.0107 1.00 2740 144 0.2131 0.2190 REMARK 3 5 3.0107 - 2.7950 1.00 2734 144 0.2309 0.2369 REMARK 3 6 2.7950 - 2.6302 1.00 2696 142 0.2341 0.2703 REMARK 3 7 2.6302 - 2.4985 1.00 2727 144 0.2638 0.2841 REMARK 3 8 2.4985 - 2.3897 0.92 2498 131 0.2800 0.2935 REMARK 3 9 2.3897 - 2.2978 0.81 2190 116 0.3078 0.3914 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.260 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 47.33 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 4116 REMARK 3 ANGLE : 0.765 5607 REMARK 3 CHIRALITY : 0.028 635 REMARK 3 PLANARITY : 0.004 712 REMARK 3 DIHEDRAL : 12.387 1425 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 - RIGID BODY REFINEMENT (SINGLE RIGID BODY PER DOMAIN) REMARK 3 REMARK 3 - ITERATIVE CYCLES OF REFINEMENT, MODEL (RE)BUILDING AND VALIDATION REMARK 3 XYZ COORDINATE REFINEMENT REMARK 3 REAL-SPACE REFINEMENT REMARK 3 INDIVIDUAL B-FACTORS REMARK 3 RIDING HYDROGENS REMARK 3 OPTIMISATION OF X-RAY/STEREOCHEMISTRY WEIGHT REMARK 3 OPTIMISATION OF X-RAY/ADP WEIGHT REMARK 3 STRUCTURE VALIDATION IN COOT, PHENIX (MOLPROBITY) AND PDB_REDO REMARK 4 REMARK 4 5J13 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-MAR-16. REMARK 100 THE DEPOSITION ID IS D_1000219511. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-DEC-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9801 REMARK 200 MONOCHROMATOR : SI[111] REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS VERSION OCT 15, 2015 REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25284 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.298 REMARK 200 RESOLUTION RANGE LOW (A) : 55.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 8.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.2300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.7 REMARK 200 STARTING MODEL: 4HK0, CHAIN B; 4HIE, CHAIN B REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM SULFATE 0.1 M SODIUM REMARK 280 ACETATE PH 4.6 25% W/V POLYETHYLENE GLYCOL 4000, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 1 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -Y,-X,-Z+1/3 REMARK 290 5555 -X+Y,Y,-Z+2/3 REMARK 290 6555 X,X-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 246.68533 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 123.34267 REMARK 290 SMTRY1 4 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 123.34267 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 246.68533 REMARK 290 SMTRY1 6 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -68.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 S SO4 B 302 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 8 REMARK 465 GLY A 9 REMARK 465 SER A 10 REMARK 465 SER A 11 REMARK 465 HIS A 12 REMARK 465 HIS A 13 REMARK 465 HIS A 14 REMARK 465 HIS A 15 REMARK 465 HIS A 16 REMARK 465 HIS A 17 REMARK 465 SER A 18 REMARK 465 SER A 19 REMARK 465 GLY A 20 REMARK 465 LEU A 21 REMARK 465 VAL A 22 REMARK 465 PRO A 23 REMARK 465 ARG A 24 REMARK 465 GLY A 25 REMARK 465 SER A 26 REMARK 465 HIS A 27 REMARK 465 GLU A 62 REMARK 465 PHE A 63 REMARK 465 GLU A 120 REMARK 465 THR A 121 REMARK 465 GLN A 122 REMARK 465 ILE A 123 REMARK 465 ASN A 124 REMARK 465 ALA A 125 REMARK 465 THR A 126 REMARK 465 GLN A 127 REMARK 465 ALA A 128 REMARK 465 MET A 129 REMARK 465 LYS A 130 REMARK 465 LYS A 131 REMARK 465 VAL A 132 REMARK 465 LYS A 157 REMARK 465 GLN A 158 REMARK 465 GLN A 159 REMARK 465 MET B -27 REMARK 465 GLY B -26 REMARK 465 ILE B -25 REMARK 465 LEU B -24 REMARK 465 PRO B -23 REMARK 465 SER B -22 REMARK 465 PRO B -21 REMARK 465 GLY B -20 REMARK 465 MET B -19 REMARK 465 PRO B -18 REMARK 465 ALA B -17 REMARK 465 LEU B -16 REMARK 465 LEU B -15 REMARK 465 SER B -14 REMARK 465 LEU B -13 REMARK 465 VAL B -12 REMARK 465 SER B -11 REMARK 465 LEU B -10 REMARK 465 LEU B -9 REMARK 465 SER B -8 REMARK 465 VAL B -7 REMARK 465 LEU B -6 REMARK 465 LEU B -5 REMARK 465 MET B -4 REMARK 465 GLY B -3 REMARK 465 CYS B -2 REMARK 465 VAL B -1 REMARK 465 ALA B 0 REMARK 465 GLU B 1 REMARK 465 THR B 2 REMARK 465 GLY B 3 REMARK 465 SER B 217 REMARK 465 MET C -27 REMARK 465 GLY C -26 REMARK 465 ILE C -25 REMARK 465 LEU C -24 REMARK 465 PRO C -23 REMARK 465 SER C -22 REMARK 465 PRO C -21 REMARK 465 GLY C -20 REMARK 465 MET C -19 REMARK 465 PRO C -18 REMARK 465 ALA C -17 REMARK 465 LEU C -16 REMARK 465 LEU C -15 REMARK 465 SER C -14 REMARK 465 LEU C -13 REMARK 465 VAL C -12 REMARK 465 SER C -11 REMARK 465 LEU C -10 REMARK 465 LEU C -9 REMARK 465 SER C -8 REMARK 465 VAL C -7 REMARK 465 LEU C -6 REMARK 465 LEU C -5 REMARK 465 MET C -4 REMARK 465 GLY C -3 REMARK 465 CYS C -2 REMARK 465 VAL C -1 REMARK 465 ALA C 0 REMARK 465 GLU C 1 REMARK 465 THR C 2 REMARK 465 GLY C 3 REMARK 465 ARG C 141 REMARK 465 SER C 142 REMARK 465 THR C 143 REMARK 465 SER C 144 REMARK 465 GLU C 145 REMARK 465 SER C 146 REMARK 465 SER C 198 REMARK 465 SER C 199 REMARK 465 ASN C 200 REMARK 465 PHE C 201 REMARK 465 GLY C 202 REMARK 465 THR C 203 REMARK 465 ARG C 225 REMARK 465 LYS C 226 REMARK 465 GLY C 227 REMARK 465 THR C 228 REMARK 465 LYS C 229 REMARK 465 HIS C 230 REMARK 465 HIS C 231 REMARK 465 HIS C 232 REMARK 465 HIS C 233 REMARK 465 HIS C 234 REMARK 465 HIS C 235 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 28 CG SD CE REMARK 470 GLU A 37 CD OE1 OE2 REMARK 470 LYS A 59 CD CE NZ REMARK 470 THR A 61 OG1 CG2 REMARK 470 ASN A 64 CG OD1 ND2 REMARK 470 LYS A 95 CG CD CE NZ REMARK 470 THR A 133 OG1 CG2 REMARK 470 ASN A 135 CG OD1 ND2 REMARK 470 LYS A 136 CG CD CE NZ REMARK 470 GLU A 139 CD OE1 OE2 REMARK 470 ARG A 149 NE CZ NH1 NH2 REMARK 470 LEU A 156 CG CD1 CD2 REMARK 470 GLU B 62 CD OE1 OE2 REMARK 470 LYS B 161 CG CD CE NZ REMARK 470 GLU B 188 CD OE1 OE2 REMARK 470 LYS B 191 CE NZ REMARK 470 GLU B 215 CD OE1 OE2 REMARK 470 GLN C 4 CG CD OE1 NE2 REMARK 470 THR C 147 OG1 CG2 REMARK 470 GLU C 224 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE ARG C 90 OE2 GLU C 92 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 46 -60.70 -141.85 REMARK 500 ASP B 53 -49.84 71.86 REMARK 500 ASP B 156 -103.32 57.87 REMARK 500 SER B 192 31.50 -93.87 REMARK 500 GLU C 106 -111.79 57.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 303 DBREF 5J13 A 29 159 UNP Q969D9 TSLP_HUMAN 29 159 DBREF 5J13 B -27 217 PDB 5J13 5J13 -27 217 DBREF 5J13 C -27 235 PDB 5J13 5J13 -27 235 SEQADV 5J13 MET A 8 UNP Q969D9 INITIATING METHIONINE SEQADV 5J13 GLY A 9 UNP Q969D9 EXPRESSION TAG SEQADV 5J13 SER A 10 UNP Q969D9 EXPRESSION TAG SEQADV 5J13 SER A 11 UNP Q969D9 EXPRESSION TAG SEQADV 5J13 HIS A 12 UNP Q969D9 EXPRESSION TAG SEQADV 5J13 HIS A 13 UNP Q969D9 EXPRESSION TAG SEQADV 5J13 HIS A 14 UNP Q969D9 EXPRESSION TAG SEQADV 5J13 HIS A 15 UNP Q969D9 EXPRESSION TAG SEQADV 5J13 HIS A 16 UNP Q969D9 EXPRESSION TAG SEQADV 5J13 HIS A 17 UNP Q969D9 EXPRESSION TAG SEQADV 5J13 SER A 18 UNP Q969D9 EXPRESSION TAG SEQADV 5J13 SER A 19 UNP Q969D9 EXPRESSION TAG SEQADV 5J13 GLY A 20 UNP Q969D9 EXPRESSION TAG SEQADV 5J13 LEU A 21 UNP Q969D9 EXPRESSION TAG SEQADV 5J13 VAL A 22 UNP Q969D9 EXPRESSION TAG SEQADV 5J13 PRO A 23 UNP Q969D9 EXPRESSION TAG SEQADV 5J13 ARG A 24 UNP Q969D9 EXPRESSION TAG SEQADV 5J13 GLY A 25 UNP Q969D9 EXPRESSION TAG SEQADV 5J13 SER A 26 UNP Q969D9 EXPRESSION TAG SEQADV 5J13 HIS A 27 UNP Q969D9 EXPRESSION TAG SEQADV 5J13 MET A 28 UNP Q969D9 EXPRESSION TAG SEQADV 5J13 A UNP Q969D9 LYS 126 DELETION SEQADV 5J13 A UNP Q969D9 ARG 127 DELETION SEQADV 5J13 A UNP Q969D9 ARG 128 DELETION SEQADV 5J13 A UNP Q969D9 LYS 129 DELETION SEQADV 5J13 A UNP Q969D9 ARG 130 DELETION SEQRES 1 A 147 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 147 LEU VAL PRO ARG GLY SER HIS MET TYR ASP PHE THR ASN SEQRES 3 A 147 CYS ASP PHE GLU LYS ILE LYS ALA ALA TYR LEU SER THR SEQRES 4 A 147 ILE SER LYS ASP LEU ILE THR TYR MET SER GLY THR LYS SEQRES 5 A 147 SER THR GLU PHE ASN ASN THR VAL SER CYS SER ASN ARG SEQRES 6 A 147 PRO HIS CYS LEU THR GLU ILE GLN SER LEU THR PHE ASN SEQRES 7 A 147 PRO THR ALA GLY CYS ALA SER LEU ALA LYS GLU MET PHE SEQRES 8 A 147 ALA MET LYS THR LYS ALA ALA LEU ALA ILE TRP CYS PRO SEQRES 9 A 147 GLY TYR SER GLU THR GLN ILE ASN ALA THR GLN ALA MET SEQRES 10 A 147 LYS LYS VAL THR THR ASN LYS CYS LEU GLU GLN VAL SER SEQRES 11 A 147 GLN LEU GLN GLY LEU TRP ARG ARG PHE ASN ARG PRO LEU SEQRES 12 A 147 LEU LYS GLN GLN SEQRES 1 B 245 MET GLY ILE LEU PRO SER PRO GLY MET PRO ALA LEU LEU SEQRES 2 B 245 SER LEU VAL SER LEU LEU SER VAL LEU LEU MET GLY CYS SEQRES 3 B 245 VAL ALA GLU THR GLY SER TYR VAL LEU THR GLN PRO PRO SEQRES 4 B 245 SER VAL SER VAL ALA PRO GLY GLN THR ALA ARG ILE THR SEQRES 5 B 245 CYS GLY GLY ASN ASN LEU GLY SER LYS SER VAL HIS TRP SEQRES 6 B 245 TYR GLN GLN LYS PRO GLY GLN ALA PRO VAL LEU VAL VAL SEQRES 7 B 245 TYR ASP ASP SER ASP ARG PRO SER TRP ILE PRO GLU ARG SEQRES 8 B 245 PHE SER GLY SER ASN SER GLY ASN THR ALA THR LEU THR SEQRES 9 B 245 ILE SER ARG GLY GLU ALA GLY ASP GLU ALA ASP TYR TYR SEQRES 10 B 245 CYS GLN VAL TRP ASP SER SER SER ASP HIS VAL VAL PHE SEQRES 11 B 245 GLY GLY GLY THR LYS LEU THR VAL LEU GLY GLN PRO LYS SEQRES 12 B 245 ALA ALA PRO SER VAL THR LEU PHE PRO PRO SER SER GLU SEQRES 13 B 245 GLU LEU GLN ALA ASN LYS ALA THR LEU VAL CYS LEU ILE SEQRES 14 B 245 SER ASP PHE TYR PRO GLY ALA VAL THR VAL ALA TRP LYS SEQRES 15 B 245 ALA ASP SER SER PRO VAL LYS ALA GLY VAL GLU THR THR SEQRES 16 B 245 THR PRO SER LYS GLN SER ASN ASN LYS TYR ALA ALA SER SEQRES 17 B 245 SER TYR LEU SER LEU THR PRO GLU GLN TRP LYS SER HIS SEQRES 18 B 245 ARG SER TYR SER CYS GLN VAL THR HIS GLU GLY SER THR SEQRES 19 B 245 VAL GLU LYS THR VAL ALA PRO THR GLU CYS SER SEQRES 1 C 263 MET GLY ILE LEU PRO SER PRO GLY MET PRO ALA LEU LEU SEQRES 2 C 263 SER LEU VAL SER LEU LEU SER VAL LEU LEU MET GLY CYS SEQRES 3 C 263 VAL ALA GLU THR GLY GLN MET GLN LEU VAL GLU SER GLY SEQRES 4 C 263 GLY GLY VAL VAL GLN PRO GLY ARG SER LEU ARG LEU SER SEQRES 5 C 263 CYS ALA ALA SER GLY PHE THR PHE ARG THR TYR GLY MET SEQRES 6 C 263 HIS TRP VAL ARG GLN ALA PRO GLY LYS GLY LEU GLU TRP SEQRES 7 C 263 VAL ALA VAL ILE TRP TYR ASP GLY SER ASN LYS HIS TYR SEQRES 8 C 263 ALA ASP SER VAL LYS GLY ARG PHE THR ILE THR ARG ASP SEQRES 9 C 263 ASN SER LYS ASN THR LEU ASN LEU GLN MET ASN SER LEU SEQRES 10 C 263 ARG ALA GLU ASP THR ALA VAL TYR TYR CYS ALA ARG ALA SEQRES 11 C 263 PRO GLN TRP GLU LEU VAL HIS GLU ALA PHE ASP ILE TRP SEQRES 12 C 263 GLY GLN GLY THR MET VAL THR VAL SER SER ALA SER THR SEQRES 13 C 263 LYS GLY PRO SER VAL PHE PRO LEU ALA PRO CYS SER ARG SEQRES 14 C 263 SER THR SER GLU SER THR ALA ALA LEU GLY CYS LEU VAL SEQRES 15 C 263 LYS ASP TYR PHE PRO GLU PRO VAL THR VAL SER TRP ASN SEQRES 16 C 263 SER GLY ALA LEU THR SER GLY VAL HIS THR PHE PRO ALA SEQRES 17 C 263 VAL LEU GLN SER SER GLY LEU TYR SER LEU SER SER VAL SEQRES 18 C 263 VAL THR VAL PRO SER SER ASN PHE GLY THR GLN THR TYR SEQRES 19 C 263 THR CYS ASN VAL ASP HIS LYS PRO SER ASN THR LYS VAL SEQRES 20 C 263 ASP LYS THR VAL GLU ARG LYS GLY THR LYS HIS HIS HIS SEQRES 21 C 263 HIS HIS HIS HET SO4 B 301 5 HET SO4 B 302 5 HET SO4 B 303 5 HETNAM SO4 SULFATE ION FORMUL 4 SO4 3(O4 S 2-) FORMUL 7 HOH *108(H2 O) HELIX 1 AA1 ASP A 30 CYS A 34 5 5 HELIX 2 AA2 ASP A 35 THR A 46 1 12 HELIX 3 AA3 THR A 46 MET A 55 1 10 HELIX 4 AA4 ASN A 71 ASN A 85 1 15 HELIX 5 AA5 GLU A 96 CYS A 110 1 15 HELIX 6 AA6 THR A 134 ASN A 152 1 19 HELIX 7 AA7 ASN B 29 LYS B 33 5 5 HELIX 8 AA8 GLU B 81 GLU B 85 5 5 HELIX 9 AA9 SER B 126 GLN B 131 1 6 HELIX 10 AB1 THR B 186 SER B 192 1 7 HELIX 11 AB2 ALA B 212 CYS B 216 5 5 HELIX 12 AB3 THR C 31 TYR C 35 5 5 HELIX 13 AB4 ARG C 90 THR C 94 5 5 HELIX 14 AB5 LYS C 213 ASN C 216 5 4 SHEET 1 AA1 5 SER B 12 VAL B 15 0 SHEET 2 AA1 5 THR B 106 VAL B 110 1 O THR B 109 N VAL B 15 SHEET 3 AA1 5 ALA B 86 ASP B 94 -1 N TYR B 88 O THR B 106 SHEET 4 AA1 5 HIS B 36 GLN B 40 -1 N HIS B 36 O GLN B 91 SHEET 5 AA1 5 VAL B 47 VAL B 50 -1 O VAL B 47 N GLN B 39 SHEET 1 AA2 4 SER B 12 VAL B 15 0 SHEET 2 AA2 4 THR B 106 VAL B 110 1 O THR B 109 N VAL B 15 SHEET 3 AA2 4 ALA B 86 ASP B 94 -1 N TYR B 88 O THR B 106 SHEET 4 AA2 4 HIS B 99 PHE B 102 -1 O HIS B 99 N ASP B 94 SHEET 1 AA3 3 ALA B 21 GLY B 26 0 SHEET 2 AA3 3 THR B 72 ILE B 77 -1 O LEU B 75 N ILE B 23 SHEET 3 AA3 3 PHE B 64 SER B 69 -1 N SER B 65 O THR B 76 SHEET 1 AA4 4 SER B 119 PHE B 123 0 SHEET 2 AA4 4 ALA B 135 PHE B 144 -1 O LEU B 140 N THR B 121 SHEET 3 AA4 4 TYR B 177 LEU B 185 -1 O ALA B 179 N ILE B 141 SHEET 4 AA4 4 VAL B 164 THR B 166 -1 N GLU B 165 O TYR B 182 SHEET 1 AA5 4 SER B 119 PHE B 123 0 SHEET 2 AA5 4 ALA B 135 PHE B 144 -1 O LEU B 140 N THR B 121 SHEET 3 AA5 4 TYR B 177 LEU B 185 -1 O ALA B 179 N ILE B 141 SHEET 4 AA5 4 SER B 170 LYS B 171 -1 N SER B 170 O ALA B 178 SHEET 1 AA6 4 SER B 158 VAL B 160 0 SHEET 2 AA6 4 THR B 150 ALA B 155 -1 N ALA B 155 O SER B 158 SHEET 3 AA6 4 TYR B 196 HIS B 202 -1 O GLN B 199 N ALA B 152 SHEET 4 AA6 4 SER B 205 VAL B 211 -1 O SER B 205 N HIS B 202 SHEET 1 AA7 4 GLN C 6 SER C 10 0 SHEET 2 AA7 4 LEU C 21 SER C 28 -1 O ALA C 26 N VAL C 8 SHEET 3 AA7 4 THR C 81 MET C 86 -1 O MET C 86 N LEU C 21 SHEET 4 AA7 4 PHE C 71 ASP C 76 -1 N THR C 72 O GLN C 85 SHEET 1 AA8 6 GLY C 13 VAL C 15 0 SHEET 2 AA8 6 THR C 119 VAL C 123 1 O THR C 122 N VAL C 15 SHEET 3 AA8 6 ALA C 95 ALA C 102 -1 N TYR C 97 O THR C 119 SHEET 4 AA8 6 GLY C 36 GLN C 42 -1 N VAL C 40 O TYR C 98 SHEET 5 AA8 6 LEU C 48 ILE C 54 -1 O VAL C 51 N TRP C 39 SHEET 6 AA8 6 LYS C 61 TYR C 63 -1 O HIS C 62 N VAL C 53 SHEET 1 AA9 4 GLY C 13 VAL C 15 0 SHEET 2 AA9 4 THR C 119 VAL C 123 1 O THR C 122 N VAL C 15 SHEET 3 AA9 4 ALA C 95 ALA C 102 -1 N TYR C 97 O THR C 119 SHEET 4 AA9 4 ILE C 114 TRP C 115 -1 O ILE C 114 N ARG C 101 SHEET 1 AB1 2 GLN C 104 TRP C 105 0 SHEET 2 AB1 2 VAL C 108 HIS C 109 -1 O VAL C 108 N TRP C 105 SHEET 1 AB2 4 SER C 132 LEU C 136 0 SHEET 2 AB2 4 ALA C 148 TYR C 157 -1 O LEU C 153 N PHE C 134 SHEET 3 AB2 4 TYR C 188 VAL C 196 -1 O VAL C 194 N LEU C 150 SHEET 4 AB2 4 VAL C 175 THR C 177 -1 N HIS C 176 O VAL C 193 SHEET 1 AB3 4 SER C 132 LEU C 136 0 SHEET 2 AB3 4 ALA C 148 TYR C 157 -1 O LEU C 153 N PHE C 134 SHEET 3 AB3 4 TYR C 188 VAL C 196 -1 O VAL C 194 N LEU C 150 SHEET 4 AB3 4 VAL C 181 LEU C 182 -1 N VAL C 181 O SER C 189 SHEET 1 AB4 3 THR C 163 TRP C 166 0 SHEET 2 AB4 3 THR C 207 HIS C 212 -1 O ASN C 209 N SER C 165 SHEET 3 AB4 3 THR C 217 THR C 222 -1 O VAL C 219 N VAL C 210 SSBOND 1 CYS A 34 CYS A 110 1555 1555 2.04 SSBOND 2 CYS A 69 CYS A 75 1555 1555 2.04 SSBOND 3 CYS A 90 CYS A 137 1555 1555 2.03 SSBOND 4 CYS B 25 CYS B 90 1555 1555 2.04 SSBOND 5 CYS B 139 CYS B 198 1555 1555 2.03 SSBOND 6 CYS B 216 CYS C 139 1555 1555 2.03 SSBOND 7 CYS C 25 CYS C 99 1555 1555 2.04 SSBOND 8 CYS C 152 CYS C 208 1555 1555 2.05 CISPEP 1 TYR B 145 PRO B 146 0 2.06 CISPEP 2 PHE C 158 PRO C 159 0 -7.68 CISPEP 3 GLU C 160 PRO C 161 0 -1.28 SITE 1 AC1 5 GLU B 85 TYR B 145 LYS B 171 TYR B 177 SITE 2 AC1 5 HOH B 415 SITE 1 AC2 5 LYS B 134 HOH B 406 SER C 132 PHE C 134 SITE 2 AC2 5 HOH C 310 SITE 1 AC3 8 GLN B 172 SER B 173 HOH B 401 HOH B 405 SITE 2 AC3 8 HOH B 408 HOH B 423 LYS C 68 HIS C 176 CRYST1 51.726 51.726 370.028 90.00 90.00 120.00 P 32 1 2 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019333 0.011162 0.000000 0.00000 SCALE2 0.000000 0.022323 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002702 0.00000