PDB Short entry for 5J42 HEADER HYDROLASE 31-MAR-16 5J42 TITLE CRYSTAL STRUCTURE OF M2HTDP2-CAT IN COMPLEX WITH A SMALL MOLECULE TITLE 2 INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSYL-DNA PHOSPHODIESTERASE 2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 118-370; COMPND 5 SYNONYM: M2HTDP2-CAT, TYR-DNA PHOSPHODIESTERASE 2,5'-TYROSYL-DNA COMPND 6 PHOSPHODIESTERASE,5'-TYR-DNA PHOSPHODIESTERASE,TRAF AND TNF RECEPTOR- COMPND 7 ASSOCIATED PROTEIN; COMPND 8 EC: 3.1.4.-; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: TDP2, TTRAP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: PLYSS KEYWDS TYROSYL DNA PHOSPHODIESTERASE 2 CATALYTIC DOMAIN, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR P.HORNYAK,L.H.PEARL,K.W.CALDECOTT,A.W.OLIVER REVDAT 5 10-JAN-24 5J42 1 LINK REVDAT 4 16-OCT-19 5J42 1 REMARK REVDAT 3 24-JAN-18 5J42 1 SOURCE REVDAT 2 06-JUL-16 5J42 1 JRNL REVDAT 1 04-MAY-16 5J42 0 JRNL AUTH P.HORNYAK,T.ASKWITH,S.WALKER,E.KOMULAINEN,M.PARADOWSKI, JRNL AUTH 2 L.E.PENNICOTT,E.J.BARTLETT,N.C.BRISSETT,A.RAOOF,M.WATSON, JRNL AUTH 3 A.M.JORDAN,D.J.OGILVIE,S.E.WARD,J.R.ATACK,L.H.PEARL, JRNL AUTH 4 K.W.CALDECOTT,A.W.OLIVER JRNL TITL MODE OF ACTION OF DNA-COMPETITIVE SMALL MOLECULE INHIBITORS JRNL TITL 2 OF TYROSYL DNA PHOSPHODIESTERASE 2. JRNL REF BIOCHEM.J. V. 473 1869 2016 JRNL REFN ESSN 1470-8728 JRNL PMID 27099339 JRNL DOI 10.1042/BCJ20160180 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.07 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.030 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.1 REMARK 3 NUMBER OF REFLECTIONS : 112934 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 5712 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.0830 - 5.2789 0.94 3629 188 0.1608 0.1932 REMARK 3 2 5.2789 - 4.1913 0.95 3655 193 0.1151 0.1321 REMARK 3 3 4.1913 - 3.6618 0.95 3639 220 0.1086 0.1428 REMARK 3 4 3.6618 - 3.3272 0.97 3754 187 0.1273 0.1567 REMARK 3 5 3.3272 - 3.0888 0.96 3602 204 0.1252 0.1624 REMARK 3 6 3.0888 - 2.9067 0.96 3738 193 0.1346 0.1759 REMARK 3 7 2.9067 - 2.7612 0.97 3690 202 0.1310 0.1753 REMARK 3 8 2.7612 - 2.6410 0.96 3658 212 0.1323 0.1695 REMARK 3 9 2.6410 - 2.5393 0.96 3719 197 0.1409 0.2038 REMARK 3 10 2.5393 - 2.4517 0.95 3671 219 0.1434 0.1721 REMARK 3 11 2.4517 - 2.3751 0.94 3588 200 0.1443 0.1838 REMARK 3 12 2.3751 - 2.3072 0.93 3619 183 0.1489 0.1829 REMARK 3 13 2.3072 - 2.2465 0.94 3558 191 0.1561 0.2124 REMARK 3 14 2.2465 - 2.1916 0.93 3584 199 0.1604 0.1868 REMARK 3 15 2.1916 - 2.1418 0.92 3526 192 0.1650 0.2124 REMARK 3 16 2.1418 - 2.0962 0.92 3562 209 0.1807 0.2475 REMARK 3 17 2.0962 - 2.0543 0.92 3549 164 0.1861 0.2765 REMARK 3 18 2.0543 - 2.0155 0.92 3548 159 0.2096 0.2395 REMARK 3 19 2.0155 - 1.9796 0.92 3530 203 0.2335 0.3000 REMARK 3 20 1.9796 - 1.9460 0.90 3422 176 0.2562 0.3411 REMARK 3 21 1.9460 - 1.9146 0.89 3416 177 0.2658 0.2750 REMARK 3 22 1.9146 - 1.8852 0.92 3551 200 0.2712 0.3235 REMARK 3 23 1.8852 - 1.8574 0.92 3464 169 0.2831 0.3376 REMARK 3 24 1.8574 - 1.8313 0.91 3543 214 0.2970 0.3290 REMARK 3 25 1.8313 - 1.8065 0.91 3518 144 0.3034 0.3642 REMARK 3 26 1.8065 - 1.7831 0.92 3417 186 0.3233 0.3289 REMARK 3 27 1.7831 - 1.7608 0.90 3547 193 0.3371 0.3834 REMARK 3 28 1.7608 - 1.7396 0.91 3501 187 0.3533 0.4019 REMARK 3 29 1.7396 - 1.7193 0.92 3563 186 0.3376 0.3564 REMARK 3 30 1.7193 - 1.7000 0.91 3461 165 0.3438 0.3467 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.170 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.020 4213 REMARK 3 ANGLE : 1.654 5744 REMARK 3 CHIRALITY : 0.102 644 REMARK 3 PLANARITY : 0.011 740 REMARK 3 DIHEDRAL : 15.759 2644 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 19 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 123 THROUGH 153 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.8186 -0.6531 -43.5518 REMARK 3 T TENSOR REMARK 3 T11: 0.1763 T22: 0.1844 REMARK 3 T33: 0.2172 T12: 0.0191 REMARK 3 T13: 0.0117 T23: -0.0097 REMARK 3 L TENSOR REMARK 3 L11: 0.5578 L22: 0.3648 REMARK 3 L33: 0.3138 L12: 0.3971 REMARK 3 L13: 0.3400 L23: 0.1481 REMARK 3 S TENSOR REMARK 3 S11: -0.0610 S12: -0.1016 S13: 0.1545 REMARK 3 S21: 0.1110 S22: 0.0057 S23: 0.0991 REMARK 3 S31: -0.0545 S32: -0.0961 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 154 THROUGH 240 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.5360 -11.4573 -51.9249 REMARK 3 T TENSOR REMARK 3 T11: 0.1398 T22: 0.1283 REMARK 3 T33: 0.1766 T12: 0.0049 REMARK 3 T13: 0.0007 T23: 0.0123 REMARK 3 L TENSOR REMARK 3 L11: 0.9768 L22: 0.7367 REMARK 3 L33: 0.7998 L12: -0.0301 REMARK 3 L13: 0.3999 L23: -0.1319 REMARK 3 S TENSOR REMARK 3 S11: 0.0384 S12: -0.0536 S13: -0.0786 REMARK 3 S21: -0.0074 S22: -0.0034 S23: 0.0706 REMARK 3 S31: 0.1039 S32: 0.0248 S33: 0.0001 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 241 THROUGH 260 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.1488 -17.5848 -48.2304 REMARK 3 T TENSOR REMARK 3 T11: 0.2015 T22: 0.2378 REMARK 3 T33: 0.2456 T12: 0.0336 REMARK 3 T13: 0.0021 T23: 0.0135 REMARK 3 L TENSOR REMARK 3 L11: 0.1165 L22: 0.2504 REMARK 3 L33: 0.0466 L12: -0.1025 REMARK 3 L13: -0.0434 L23: 0.0856 REMARK 3 S TENSOR REMARK 3 S11: -0.0311 S12: 0.0425 S13: -0.0623 REMARK 3 S21: -0.0815 S22: -0.0558 S23: -0.1372 REMARK 3 S31: 0.2958 S32: 0.3045 S33: -0.0010 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 261 THROUGH 325 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.7442 -4.5752 -45.2845 REMARK 3 T TENSOR REMARK 3 T11: 0.1442 T22: 0.1696 REMARK 3 T33: 0.1628 T12: -0.0036 REMARK 3 T13: 0.0035 T23: 0.0104 REMARK 3 L TENSOR REMARK 3 L11: 1.2759 L22: 0.8939 REMARK 3 L33: 0.3459 L12: 0.0870 REMARK 3 L13: 0.3246 L23: -0.1350 REMARK 3 S TENSOR REMARK 3 S11: -0.0006 S12: -0.0646 S13: 0.0101 REMARK 3 S21: 0.0175 S22: -0.0346 S23: -0.2033 REMARK 3 S31: 0.0348 S32: 0.2544 S33: 0.0002 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 326 THROUGH 345 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.1715 -0.7030 -56.0932 REMARK 3 T TENSOR REMARK 3 T11: 0.1874 T22: 0.2429 REMARK 3 T33: 0.1658 T12: 0.0103 REMARK 3 T13: 0.0265 T23: 0.0272 REMARK 3 L TENSOR REMARK 3 L11: 0.3952 L22: 0.2909 REMARK 3 L33: 0.1993 L12: 0.1185 REMARK 3 L13: 0.2778 L23: 0.1168 REMARK 3 S TENSOR REMARK 3 S11: 0.0028 S12: 0.3262 S13: 0.0604 REMARK 3 S21: -0.2755 S22: -0.0427 S23: -0.1985 REMARK 3 S31: -0.0684 S32: 0.1660 S33: -0.0030 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 346 THROUGH 370 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.9770 3.4093 -44.8353 REMARK 3 T TENSOR REMARK 3 T11: 0.1922 T22: 0.1942 REMARK 3 T33: 0.2360 T12: 0.0232 REMARK 3 T13: 0.0163 T23: -0.0056 REMARK 3 L TENSOR REMARK 3 L11: 0.8422 L22: 0.5762 REMARK 3 L33: 0.2328 L12: 0.3512 REMARK 3 L13: 0.3896 L23: 0.0120 REMARK 3 S TENSOR REMARK 3 S11: -0.0084 S12: 0.0630 S13: 0.2073 REMARK 3 S21: 0.1091 S22: 0.0141 S23: 0.0833 REMARK 3 S31: -0.2054 S32: -0.1871 S33: 0.0004 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 122 THROUGH 138 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.1682 -7.7350 -9.7595 REMARK 3 T TENSOR REMARK 3 T11: 0.1962 T22: 0.2487 REMARK 3 T33: 0.1683 T12: -0.0024 REMARK 3 T13: -0.0052 T23: -0.0139 REMARK 3 L TENSOR REMARK 3 L11: 0.1372 L22: 0.1979 REMARK 3 L33: 0.0809 L12: -0.0846 REMARK 3 L13: -0.0080 L23: 0.1110 REMARK 3 S TENSOR REMARK 3 S11: -0.1278 S12: -0.0726 S13: 0.0359 REMARK 3 S21: -0.0526 S22: 0.0662 S23: 0.0144 REMARK 3 S31: 0.0205 S32: -0.1786 S33: -0.0001 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 139 THROUGH 153 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.9875 -10.9395 -12.0997 REMARK 3 T TENSOR REMARK 3 T11: 0.2109 T22: 0.2548 REMARK 3 T33: 0.2109 T12: -0.0346 REMARK 3 T13: -0.0177 T23: 0.0105 REMARK 3 L TENSOR REMARK 3 L11: 0.0956 L22: 0.0554 REMARK 3 L33: 0.0320 L12: -0.0023 REMARK 3 L13: -0.0548 L23: -0.0048 REMARK 3 S TENSOR REMARK 3 S11: 0.1023 S12: 0.0553 S13: -0.0713 REMARK 3 S21: 0.0147 S22: 0.0994 S23: 0.2271 REMARK 3 S31: 0.0763 S32: -0.1926 S33: -0.0011 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 154 THROUGH 174 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.6263 -2.8751 -7.6553 REMARK 3 T TENSOR REMARK 3 T11: 0.2174 T22: 0.3080 REMARK 3 T33: 0.2463 T12: -0.0010 REMARK 3 T13: 0.0001 T23: 0.0274 REMARK 3 L TENSOR REMARK 3 L11: 0.1091 L22: 0.3869 REMARK 3 L33: 0.0849 L12: 0.0080 REMARK 3 L13: -0.0066 L23: 0.0716 REMARK 3 S TENSOR REMARK 3 S11: 0.0241 S12: -0.1332 S13: 0.0261 REMARK 3 S21: -0.0612 S22: 0.0576 S23: 0.2295 REMARK 3 S31: 0.0714 S32: -0.1131 S33: -0.0002 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 175 THROUGH 190 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.7395 2.9525 -5.4008 REMARK 3 T TENSOR REMARK 3 T11: 0.2630 T22: 0.2932 REMARK 3 T33: 0.2656 T12: 0.0306 REMARK 3 T13: 0.0006 T23: 0.0020 REMARK 3 L TENSOR REMARK 3 L11: 0.0746 L22: 0.0959 REMARK 3 L33: 0.2317 L12: -0.0835 REMARK 3 L13: -0.1316 L23: 0.1471 REMARK 3 S TENSOR REMARK 3 S11: 0.1283 S12: -0.1533 S13: 0.1495 REMARK 3 S21: 0.0481 S22: -0.0051 S23: 0.3371 REMARK 3 S31: -0.1448 S32: -0.2067 S33: 0.0010 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 191 THROUGH 208 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.4141 0.0187 4.7397 REMARK 3 T TENSOR REMARK 3 T11: 0.2757 T22: 0.3293 REMARK 3 T33: 0.2224 T12: 0.0011 REMARK 3 T13: 0.0253 T23: 0.0078 REMARK 3 L TENSOR REMARK 3 L11: 0.1382 L22: 0.0812 REMARK 3 L33: 0.1758 L12: -0.1044 REMARK 3 L13: -0.1554 L23: 0.1190 REMARK 3 S TENSOR REMARK 3 S11: -0.0425 S12: -0.2688 S13: 0.0041 REMARK 3 S21: 0.1179 S22: -0.0052 S23: 0.1353 REMARK 3 S31: -0.0701 S32: -0.0772 S33: -0.0005 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 209 THROUGH 225 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.0018 4.6479 -2.5592 REMARK 3 T TENSOR REMARK 3 T11: 0.2372 T22: 0.2576 REMARK 3 T33: 0.2222 T12: 0.0084 REMARK 3 T13: -0.0084 T23: -0.0098 REMARK 3 L TENSOR REMARK 3 L11: 0.4159 L22: 0.1068 REMARK 3 L33: 0.1395 L12: 0.0369 REMARK 3 L13: 0.1116 L23: 0.0282 REMARK 3 S TENSOR REMARK 3 S11: -0.0575 S12: -0.3020 S13: 0.0521 REMARK 3 S21: 0.1375 S22: -0.0420 S23: 0.1033 REMARK 3 S31: -0.0127 S32: -0.0370 S33: -0.0229 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 226 THROUGH 240 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.1653 -2.6815 1.1941 REMARK 3 T TENSOR REMARK 3 T11: 0.2747 T22: 0.3078 REMARK 3 T33: 0.2327 T12: -0.0142 REMARK 3 T13: 0.0119 T23: -0.0016 REMARK 3 L TENSOR REMARK 3 L11: 0.5522 L22: 0.3900 REMARK 3 L33: 0.2770 L12: -0.2545 REMARK 3 L13: 0.2647 L23: 0.0344 REMARK 3 S TENSOR REMARK 3 S11: -0.0523 S12: -0.4469 S13: -0.0341 REMARK 3 S21: 0.2472 S22: -0.0005 S23: -0.0252 REMARK 3 S31: 0.0837 S32: 0.0918 S33: -0.0000 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 241 THROUGH 260 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.1021 1.3768 -3.0529 REMARK 3 T TENSOR REMARK 3 T11: 0.2118 T22: 0.1759 REMARK 3 T33: 0.1895 T12: -0.0186 REMARK 3 T13: -0.0374 T23: -0.0248 REMARK 3 L TENSOR REMARK 3 L11: 0.2654 L22: 0.2350 REMARK 3 L33: 0.1036 L12: -0.0514 REMARK 3 L13: 0.0750 L23: -0.1355 REMARK 3 S TENSOR REMARK 3 S11: -0.0239 S12: -0.0016 S13: 0.0873 REMARK 3 S21: 0.0317 S22: -0.0363 S23: -0.1950 REMARK 3 S31: -0.2981 S32: 0.1133 S33: -0.0005 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 261 THROUGH 283 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.5713 -5.5693 -1.0995 REMARK 3 T TENSOR REMARK 3 T11: 0.2608 T22: 0.3436 REMARK 3 T33: 0.2623 T12: -0.0145 REMARK 3 T13: -0.0206 T23: 0.0258 REMARK 3 L TENSOR REMARK 3 L11: 0.3464 L22: 0.2783 REMARK 3 L33: 0.0994 L12: -0.1730 REMARK 3 L13: 0.1479 L23: -0.1471 REMARK 3 S TENSOR REMARK 3 S11: -0.0870 S12: -0.2581 S13: -0.1683 REMARK 3 S21: 0.1079 S22: -0.1042 S23: -0.1535 REMARK 3 S31: -0.1148 S32: 0.2469 S33: -0.0014 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 284 THROUGH 303 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.3607 -15.6500 0.6021 REMARK 3 T TENSOR REMARK 3 T11: 0.2161 T22: 0.2202 REMARK 3 T33: 0.2352 T12: -0.0044 REMARK 3 T13: -0.0507 T23: 0.0068 REMARK 3 L TENSOR REMARK 3 L11: 0.3564 L22: 0.2688 REMARK 3 L33: 0.1126 L12: -0.3017 REMARK 3 L13: 0.1703 L23: -0.1221 REMARK 3 S TENSOR REMARK 3 S11: -0.0051 S12: -0.0020 S13: -0.1465 REMARK 3 S21: 0.0179 S22: 0.0105 S23: -0.1326 REMARK 3 S31: 0.1696 S32: 0.0825 S33: 0.0001 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 304 THROUGH 325 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.4214 -13.2566 -18.9065 REMARK 3 T TENSOR REMARK 3 T11: 0.3285 T22: 0.2859 REMARK 3 T33: 0.2532 T12: 0.0260 REMARK 3 T13: 0.0156 T23: -0.0387 REMARK 3 L TENSOR REMARK 3 L11: 0.4482 L22: 0.0795 REMARK 3 L33: 0.1126 L12: 0.0544 REMARK 3 L13: -0.2215 L23: -0.0304 REMARK 3 S TENSOR REMARK 3 S11: -0.0054 S12: 0.3239 S13: -0.1924 REMARK 3 S21: -0.1910 S22: -0.1054 S23: -0.0431 REMARK 3 S31: 0.2592 S32: 0.2103 S33: -0.0033 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 326 THROUGH 345 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.1031 -14.1471 3.6990 REMARK 3 T TENSOR REMARK 3 T11: 0.2618 T22: 0.3090 REMARK 3 T33: 0.1895 T12: -0.0303 REMARK 3 T13: -0.0069 T23: 0.0159 REMARK 3 L TENSOR REMARK 3 L11: 0.0786 L22: 0.1989 REMARK 3 L33: 0.0384 L12: -0.0824 REMARK 3 L13: -0.0331 L23: -0.0180 REMARK 3 S TENSOR REMARK 3 S11: 0.0783 S12: -0.3490 S13: -0.1828 REMARK 3 S21: 0.2759 S22: -0.0105 S23: 0.0480 REMARK 3 S31: 0.1099 S32: -0.2646 S33: -0.0008 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 346 THROUGH 370 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.3085 -14.3644 -9.3291 REMARK 3 T TENSOR REMARK 3 T11: 0.2333 T22: 0.2352 REMARK 3 T33: 0.1935 T12: -0.0290 REMARK 3 T13: -0.0306 T23: -0.0044 REMARK 3 L TENSOR REMARK 3 L11: 0.4584 L22: 0.9228 REMARK 3 L33: 0.0214 L12: -0.1208 REMARK 3 L13: -0.0384 L23: -0.1097 REMARK 3 S TENSOR REMARK 3 S11: 0.0188 S12: -0.1234 S13: -0.1331 REMARK 3 S21: -0.1017 S22: 0.0094 S23: 0.1019 REMARK 3 S31: 0.3349 S32: -0.1648 S33: -0.0001 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5J42 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-APR-16. REMARK 100 THE DEPOSITION ID IS D_1000219921. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JAN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 112934 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 42.070 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.04300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.81000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4GYZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BIS-TRIS PROPANE PH 6.5, 0.2 M REMARK 280 SODIUM TARTRATE, 20% W/V PEG3350, 0.3% V/V DMSO, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 21.43600 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 115 REMARK 465 ASN A 116 REMARK 465 ALA A 117 REMARK 465 LEU A 118 REMARK 465 GLU A 119 REMARK 465 ASP A 120 REMARK 465 SER A 121 REMARK 465 SER A 122 REMARK 465 SER B 115 REMARK 465 ASN B 116 REMARK 465 ALA B 117 REMARK 465 LEU B 118 REMARK 465 GLU B 119 REMARK 465 ASP B 120 REMARK 465 SER B 121 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 173 CG CD CE NZ REMARK 470 LYS A 310 CG CD CE NZ REMARK 470 GLU A 334 CG CD OE1 OE2 REMARK 470 HIS A 336 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 348 CG CD OE1 OE2 REMARK 470 SER B 122 OG REMARK 470 LYS B 173 CG CD CE NZ REMARK 470 LYS B 200 CG CD CE NZ REMARK 470 ASP B 263 CG OD1 OD2 REMARK 470 GLU B 333 CG CD OE1 OE2 REMARK 470 GLU B 334 CG CD OE1 OE2 REMARK 470 GLU B 348 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O1 GOL A 404 O HOH A 501 1.82 REMARK 500 O HOH A 683 O HOH A 754 2.00 REMARK 500 O HOH A 671 O HOH A 676 2.02 REMARK 500 O HOH B 685 O HOH B 759 2.04 REMARK 500 O3 GOL A 404 O HOH A 502 2.06 REMARK 500 O HOH B 733 O HOH B 739 2.06 REMARK 500 O HOH B 576 O HOH B 802 2.12 REMARK 500 O3 GOL A 404 O HOH A 503 2.14 REMARK 500 O HOH A 587 O HOH A 648 2.15 REMARK 500 O HOH B 587 O HOH B 803 2.17 REMARK 500 O HOH B 550 O HOH B 564 2.18 REMARK 500 O HOH A 553 O HOH A 638 2.18 REMARK 500 O HOH B 537 O HOH B 648 2.19 REMARK 500 O HOH A 519 O HOH A 759 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 557 O HOH B 694 2555 2.02 REMARK 500 O HOH B 551 O HOH B 689 2445 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO A 165 CD PRO A 165 N -0.212 REMARK 500 CYS A 168 CB CYS A 168 SG -0.099 REMARK 500 TYR A 170 CB TYR A 170 CG -0.116 REMARK 500 CYS B 168 CB CYS B 168 SG -0.192 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 160 CB - CG - CD1 ANGL. DEV. = -11.5 DEGREES REMARK 500 ARG A 278 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 MET B 214 CG - SD - CE ANGL. DEV. = 12.2 DEGREES REMARK 500 ARG B 316 NE - CZ - NH1 ANGL. DEV. = -4.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 240 157.30 87.27 REMARK 500 ASN A 274 15.51 58.05 REMARK 500 ASP A 277 -134.25 54.79 REMARK 500 ARG A 324 70.78 -118.70 REMARK 500 GLU A 333 25.85 -140.22 REMARK 500 GLU A 334 88.59 58.23 REMARK 500 HIS A 336 -126.81 -116.82 REMARK 500 THR B 240 156.81 86.36 REMARK 500 ARG B 324 73.08 -108.64 REMARK 500 GLU B 334 119.87 -39.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 856 DISTANCE = 6.59 ANGSTROMS REMARK 525 HOH B 836 DISTANCE = 5.97 ANGSTROMS REMARK 525 HOH B 837 DISTANCE = 6.58 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 406 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 132 OD1 REMARK 620 2 GLU A 162 OE2 94.7 REMARK 620 3 TLA A 403 O3 169.9 89.7 REMARK 620 4 TLA A 403 O4 95.2 93.9 75.4 REMARK 620 5 HOH A 530 O 93.8 170.5 82.6 89.6 REMARK 620 6 HOH A 613 O 97.7 89.3 91.4 166.4 85.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 408 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 132 OD1 REMARK 620 2 GLU B 162 OE1 92.1 REMARK 620 3 TLA B 403 O3 169.9 93.9 REMARK 620 4 TLA B 403 O41 94.6 96.1 76.8 REMARK 620 5 HOH B 553 O 97.5 87.7 90.8 167.3 REMARK 620 6 HOH B 647 O 91.4 173.0 83.4 89.5 85.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6FV A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TLA A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TLA A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6FV B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TLA B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TLA B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TLA B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TLA B 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN B 408 DBREF 5J42 A 118 370 UNP Q9JJX7 TYDP2_MOUSE 118 370 DBREF 5J42 B 118 370 UNP Q9JJX7 TYDP2_MOUSE 118 370 SEQADV 5J42 SER A 115 UNP Q9JJX7 EXPRESSION TAG SEQADV 5J42 ASN A 116 UNP Q9JJX7 EXPRESSION TAG SEQADV 5J42 ALA A 117 UNP Q9JJX7 EXPRESSION TAG SEQADV 5J42 GLY A 242 UNP Q9JJX7 GLU 242 ENGINEERED MUTATION SEQADV 5J42 ARG A 278 UNP Q9JJX7 GLN 278 ENGINEERED MUTATION SEQADV 5J42 CYS A 321 UNP Q9JJX7 TYR 321 ENGINEERED MUTATION SEQADV 5J42 LEU A 323 UNP Q9JJX7 HIS 323 ENGINEERED MUTATION SEQADV 5J42 SER B 115 UNP Q9JJX7 EXPRESSION TAG SEQADV 5J42 ASN B 116 UNP Q9JJX7 EXPRESSION TAG SEQADV 5J42 ALA B 117 UNP Q9JJX7 EXPRESSION TAG SEQADV 5J42 GLY B 242 UNP Q9JJX7 GLU 242 ENGINEERED MUTATION SEQADV 5J42 ARG B 278 UNP Q9JJX7 GLN 278 ENGINEERED MUTATION SEQADV 5J42 CYS B 321 UNP Q9JJX7 TYR 321 ENGINEERED MUTATION SEQADV 5J42 LEU B 323 UNP Q9JJX7 HIS 323 ENGINEERED MUTATION SEQRES 1 A 256 SER ASN ALA LEU GLU ASP SER SER THR ILE SER PHE ILE SEQRES 2 A 256 THR TRP ASN ILE ASP GLY LEU ASP GLY CYS ASN LEU PRO SEQRES 3 A 256 GLU ARG ALA ARG GLY VAL CYS SER CYS LEU ALA LEU TYR SEQRES 4 A 256 SER PRO ASP VAL VAL PHE LEU GLN GLU VAL ILE PRO PRO SEQRES 5 A 256 TYR CYS ALA TYR LEU LYS LYS ARG ALA ALA SER TYR THR SEQRES 6 A 256 ILE ILE THR GLY ASN GLU GLU GLY TYR PHE THR ALA ILE SEQRES 7 A 256 LEU LEU LYS LYS GLY ARG VAL LYS PHE LYS SER GLN GLU SEQRES 8 A 256 ILE ILE PRO PHE PRO ASN THR LYS MET MET ARG ASN LEU SEQRES 9 A 256 LEU CYS VAL ASN VAL SER LEU GLY GLY ASN GLU PHE CYS SEQRES 10 A 256 LEU MET THR SER HIS LEU GLU SER THR ARG GLY HIS SER SEQRES 11 A 256 ALA GLU ARG ILE ARG GLN LEU LYS THR VAL LEU GLY LYS SEQRES 12 A 256 MET GLN GLU ALA PRO ASP SER THR THR VAL ILE PHE ALA SEQRES 13 A 256 GLY ASP THR ASN LEU ARG ASP ARG GLU VAL ILE LYS CYS SEQRES 14 A 256 GLY GLY LEU PRO ASP ASN VAL PHE ASP ALA TRP GLU PHE SEQRES 15 A 256 LEU GLY LYS PRO LYS HIS CYS GLN TYR THR TRP ASP THR SEQRES 16 A 256 LYS ALA ASN ASN ASN LEU ARG ILE PRO ALA ALA CYS LYS SEQRES 17 A 256 LEU ARG PHE ASP ARG ILE PHE PHE ARG ALA GLU GLU GLY SEQRES 18 A 256 HIS LEU ILE PRO GLN SER LEU ASP LEU VAL GLY LEU GLU SEQRES 19 A 256 LYS LEU ASP CYS GLY ARG PHE PRO SER ASP HIS TRP GLY SEQRES 20 A 256 LEU LEU CYS THR LEU ASN VAL VAL LEU SEQRES 1 B 256 SER ASN ALA LEU GLU ASP SER SER THR ILE SER PHE ILE SEQRES 2 B 256 THR TRP ASN ILE ASP GLY LEU ASP GLY CYS ASN LEU PRO SEQRES 3 B 256 GLU ARG ALA ARG GLY VAL CYS SER CYS LEU ALA LEU TYR SEQRES 4 B 256 SER PRO ASP VAL VAL PHE LEU GLN GLU VAL ILE PRO PRO SEQRES 5 B 256 TYR CYS ALA TYR LEU LYS LYS ARG ALA ALA SER TYR THR SEQRES 6 B 256 ILE ILE THR GLY ASN GLU GLU GLY TYR PHE THR ALA ILE SEQRES 7 B 256 LEU LEU LYS LYS GLY ARG VAL LYS PHE LYS SER GLN GLU SEQRES 8 B 256 ILE ILE PRO PHE PRO ASN THR LYS MET MET ARG ASN LEU SEQRES 9 B 256 LEU CYS VAL ASN VAL SER LEU GLY GLY ASN GLU PHE CYS SEQRES 10 B 256 LEU MET THR SER HIS LEU GLU SER THR ARG GLY HIS SER SEQRES 11 B 256 ALA GLU ARG ILE ARG GLN LEU LYS THR VAL LEU GLY LYS SEQRES 12 B 256 MET GLN GLU ALA PRO ASP SER THR THR VAL ILE PHE ALA SEQRES 13 B 256 GLY ASP THR ASN LEU ARG ASP ARG GLU VAL ILE LYS CYS SEQRES 14 B 256 GLY GLY LEU PRO ASP ASN VAL PHE ASP ALA TRP GLU PHE SEQRES 15 B 256 LEU GLY LYS PRO LYS HIS CYS GLN TYR THR TRP ASP THR SEQRES 16 B 256 LYS ALA ASN ASN ASN LEU ARG ILE PRO ALA ALA CYS LYS SEQRES 17 B 256 LEU ARG PHE ASP ARG ILE PHE PHE ARG ALA GLU GLU GLY SEQRES 18 B 256 HIS LEU ILE PRO GLN SER LEU ASP LEU VAL GLY LEU GLU SEQRES 19 B 256 LYS LEU ASP CYS GLY ARG PHE PRO SER ASP HIS TRP GLY SEQRES 20 B 256 LEU LEU CYS THR LEU ASN VAL VAL LEU HET 6FV A 401 25 HET TLA A 402 10 HET TLA A 403 10 HET GOL A 404 6 HET EDO A 405 4 HET MN A 406 1 HET 6FV B 401 25 HET TLA B 402 10 HET TLA B 403 10 HET TLA B 404 10 HET TLA B 405 20 HET GOL B 406 6 HET EDO B 407 4 HET MN B 408 1 HETNAM 6FV 10-(4-HYDROXYPHENYL)-2,4-DIOXO-2,3,4,10- HETNAM 2 6FV TETRAHYDROPYRIMIDO[4,5-B]QUINOLINE-8-CARBONITRILE HETNAM TLA L(+)-TARTARIC ACID HETNAM GOL GLYCEROL HETNAM EDO 1,2-ETHANEDIOL HETNAM MN MANGANESE (II) ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 6FV 2(C18 H10 N4 O3) FORMUL 4 TLA 6(C4 H6 O6) FORMUL 6 GOL 2(C3 H8 O3) FORMUL 7 EDO 2(C2 H6 O2) FORMUL 8 MN 2(MN 2+) FORMUL 17 HOH *693(H2 O) HELIX 1 AA1 ASN A 138 SER A 154 1 17 HELIX 2 AA2 ILE A 164 ALA A 175 1 12 HELIX 3 AA3 THR A 240 GLY A 242 5 3 HELIX 4 AA4 HIS A 243 ALA A 261 1 19 HELIX 5 AA5 ARG A 278 CYS A 283 1 6 HELIX 6 AA6 ALA A 293 LEU A 297 1 5 HELIX 7 AA7 PRO A 300 GLN A 304 5 5 HELIX 8 AA8 ASN B 138 SER B 154 1 17 HELIX 9 AA9 ILE B 164 ALA B 175 1 12 HELIX 10 AB1 THR B 240 GLY B 242 5 3 HELIX 11 AB2 HIS B 243 ALA B 261 1 19 HELIX 12 AB3 ARG B 276 GLY B 284 1 9 HELIX 13 AB4 ALA B 293 LEU B 297 1 5 HELIX 14 AB5 PRO B 300 GLN B 304 5 5 SHEET 1 AA1 6 TYR A 178 THR A 182 0 SHEET 2 AA1 6 PHE A 189 LYS A 195 -1 O LEU A 194 N THR A 179 SHEET 3 AA1 6 VAL A 157 VAL A 163 -1 N LEU A 160 O ALA A 191 SHEET 4 AA1 6 ILE A 124 ASN A 130 1 N ILE A 127 O PHE A 159 SHEET 5 AA1 6 GLY A 361 VAL A 368 -1 O CYS A 364 N PHE A 126 SHEET 6 AA1 6 LEU A 337 VAL A 345 -1 N GLN A 340 O THR A 365 SHEET 1 AA2 6 VAL A 199 PRO A 208 0 SHEET 2 AA2 6 ASN A 217 LEU A 225 -1 O LEU A 218 N ILE A 207 SHEET 3 AA2 6 ASN A 228 THR A 234 -1 O LEU A 232 N VAL A 221 SHEET 4 AA2 6 THR A 266 ASP A 272 1 O ILE A 268 N MET A 233 SHEET 5 AA2 6 ASP A 326 ARG A 331 -1 O PHE A 329 N PHE A 269 SHEET 6 AA2 6 VAL A 290 ASP A 292 -1 N PHE A 291 O PHE A 330 SHEET 1 AA3 2 TRP A 307 ASP A 308 0 SHEET 2 AA3 2 LYS A 322 LEU A 323 -1 O LEU A 323 N TRP A 307 SHEET 1 AA4 6 TYR B 178 THR B 182 0 SHEET 2 AA4 6 PHE B 189 LYS B 195 -1 O ILE B 192 N ILE B 181 SHEET 3 AA4 6 VAL B 157 VAL B 163 -1 N LEU B 160 O ALA B 191 SHEET 4 AA4 6 THR B 123 ASN B 130 1 N ILE B 127 O PHE B 159 SHEET 5 AA4 6 GLY B 361 VAL B 368 -1 O LEU B 366 N ILE B 124 SHEET 6 AA4 6 LEU B 337 VAL B 345 -1 N GLN B 340 O THR B 365 SHEET 1 AA5 6 LYS B 200 PRO B 208 0 SHEET 2 AA5 6 ASN B 217 LEU B 225 -1 O LEU B 218 N ILE B 207 SHEET 3 AA5 6 ASN B 228 THR B 234 -1 O LEU B 232 N VAL B 221 SHEET 4 AA5 6 THR B 266 ASP B 272 1 O ILE B 268 N MET B 233 SHEET 5 AA5 6 ASP B 326 ARG B 331 -1 O PHE B 329 N PHE B 269 SHEET 6 AA5 6 PHE B 291 ASP B 292 -1 N PHE B 291 O PHE B 330 SHEET 1 AA6 2 TRP B 307 ASP B 308 0 SHEET 2 AA6 2 LYS B 322 LEU B 323 -1 O LEU B 323 N TRP B 307 SSBOND 1 CYS A 137 CYS B 137 1555 1555 2.02 LINK OD1 ASP A 132 MN MN A 406 1555 1555 2.09 LINK OE2 GLU A 162 MN MN A 406 1555 1555 2.27 LINK O3 TLA A 403 MN MN A 406 1555 1555 2.25 LINK O4 TLA A 403 MN MN A 406 1555 1555 2.08 LINK MN MN A 406 O HOH A 530 1555 1555 2.39 LINK MN MN A 406 O HOH A 613 1555 1555 2.23 LINK OD1 ASP B 132 MN MN B 408 1555 1555 2.10 LINK OE1 GLU B 162 MN MN B 408 1555 1555 2.23 LINK O3 TLA B 403 MN MN B 408 1555 1555 2.20 LINK O41 TLA B 403 MN MN B 408 1555 1555 2.18 LINK MN MN B 408 O HOH B 553 1555 1555 2.21 LINK MN MN B 408 O HOH B 647 1555 1555 2.24 SITE 1 AC1 14 THR A 240 ARG A 241 ARG A 276 CYS A 321 SITE 2 AC1 14 LEU A 323 TLA A 402 HOH A 528 HOH A 539 SITE 3 AC1 14 HOH A 541 HOH A 582 ILE B 317 PRO B 318 SITE 4 AC1 14 6FV B 401 TLA B 405 SITE 1 AC2 11 THR A 240 ARG A 241 GLY A 242 6FV A 401 SITE 2 AC2 11 HOH A 521 HOH A 534 HOH A 716 HOH A 720 SITE 3 AC2 11 ALA B 319 ALA B 320 HOH B 591 SITE 1 AC3 15 ASP A 132 LEU A 134 GLU A 162 ARG A 216 SITE 2 AC3 15 HIS A 236 SER A 239 MN A 406 HOH A 528 SITE 3 AC3 15 HOH A 530 HOH A 536 HOH A 601 HOH A 616 SITE 4 AC3 15 HOH A 625 HOH A 642 ARG B 316 SITE 1 AC4 10 LYS A 252 LEU A 255 GLY A 256 GLN A 259 SITE 2 AC4 10 GLY A 285 PRO A 287 HOH A 501 HOH A 502 SITE 3 AC4 10 HOH A 503 HOH A 666 SITE 1 AC5 8 ARG A 276 ASP A 277 LEU A 323 ARG A 327 SITE 2 AC5 8 HOH A 506 HOH A 533 HOH A 604 HOH A 615 SITE 1 AC6 5 ASP A 132 GLU A 162 TLA A 403 HOH A 530 SITE 2 AC6 5 HOH A 613 SITE 1 AC7 14 ILE A 317 PRO A 318 6FV A 401 THR B 240 SITE 2 AC7 14 ARG B 241 ARG B 276 ARG B 278 TRP B 307 SITE 3 AC7 14 CYS B 321 TLA B 402 TLA B 405 HOH B 510 SITE 4 AC7 14 HOH B 533 HOH B 583 SITE 1 AC8 13 PRO A 318 ALA A 319 ALA A 320 HOH A 566 SITE 2 AC8 13 THR B 240 ARG B 241 GLY B 242 6FV B 401 SITE 3 AC8 13 HOH B 505 HOH B 506 HOH B 512 HOH B 632 SITE 4 AC8 13 HOH B 725 SITE 1 AC9 15 ARG A 316 ASP B 132 LEU B 134 GLU B 162 SITE 2 AC9 15 ARG B 216 HIS B 236 SER B 239 MN B 408 SITE 3 AC9 15 HOH B 510 HOH B 547 HOH B 559 HOH B 594 SITE 4 AC9 15 HOH B 606 HOH B 647 HOH B 659 SITE 1 AD1 10 ARG B 276 ASP B 277 TYR B 305 LEU B 323 SITE 2 AD1 10 HOH B 504 HOH B 517 HOH B 602 HOH B 617 SITE 3 AD1 10 HOH B 640 HOH B 644 SITE 1 AD2 10 ARG A 241 ALA A 319 6FV A 401 ARG B 241 SITE 2 AD2 10 ALA B 319 6FV B 401 HOH B 501 HOH B 512 SITE 3 AD2 10 HOH B 632 HOH B 639 SITE 1 AD3 7 PHE B 209 PRO B 210 ASN B 211 GLU B 246 SITE 2 AD3 7 ARG B 249 THR B 253 HOH B 624 SITE 1 AD4 7 LYS B 301 GLN B 304 TYR B 305 ASP B 308 SITE 2 AD4 7 LEU B 344 TRP B 360 HOH B 609 SITE 1 AD5 6 ARG A 316 ASP B 132 GLU B 162 TLA B 403 SITE 2 AD5 6 HOH B 553 HOH B 647 CRYST1 61.054 42.872 109.054 90.00 94.05 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016379 0.000000 0.001159 0.00000 SCALE2 0.000000 0.023325 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009193 0.00000