PDB Short entry for 5J81 HEADER VIRAL PROTEIN 07-APR-16 5J81 TITLE CRYSTAL STRUCTURE OF GLYCOPROTEIN C FROM PUUMALA VIRUS IN THE POST- TITLE 2 FUSION CONFORMATION (PH 6.0) COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENVELOPMENT POLYPROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: M POLYPROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PUUMALA VIRUS (STRAIN P360); SOURCE 3 ORGANISM_TAXID: 39001; SOURCE 4 STRAIN: P360; SOURCE 5 GENE: GP; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_COMMON: CABBAGE LOOPER; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7111 KEYWDS MEMBRANE FUSION, VIRUS, GLYCOPROTEIN, CLASS II, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.WILLENSKY,M.DESSAU REVDAT 3 29-JUL-20 5J81 1 COMPND REMARK HETNAM HETSYN REVDAT 3 2 1 LINK SITE ATOM REVDAT 2 09-NOV-16 5J81 1 JRNL REVDAT 1 05-OCT-16 5J81 0 JRNL AUTH S.WILLENSKY,H.BAR-ROGOVSKY,E.A.BIGNON,N.D.TISCHLER,Y.MODIS, JRNL AUTH 2 M.DESSAU JRNL TITL CRYSTAL STRUCTURE OF GLYCOPROTEIN C FROM A HANTAVIRUS IN THE JRNL TITL 2 POST-FUSION CONFORMATION. JRNL REF PLOS PATHOG. V. 12 05948 2016 JRNL REFN ESSN 1553-7374 JRNL PMID 27783673 JRNL DOI 10.1371/JOURNAL.PPAT.1005948 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.22 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 41357 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 2103 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.2323 - 4.4383 1.00 2766 154 0.1733 0.1713 REMARK 3 2 4.4383 - 3.5231 1.00 2679 133 0.1474 0.1888 REMARK 3 3 3.5231 - 3.0779 1.00 2638 152 0.1657 0.1821 REMARK 3 4 3.0779 - 2.7965 1.00 2618 136 0.1790 0.2226 REMARK 3 5 2.7965 - 2.5961 1.00 2628 122 0.1828 0.2416 REMARK 3 6 2.5961 - 2.4430 1.00 2602 166 0.1846 0.2075 REMARK 3 7 2.4430 - 2.3207 1.00 2618 111 0.1904 0.2353 REMARK 3 8 2.3207 - 2.2197 1.00 2607 133 0.1926 0.2134 REMARK 3 9 2.2197 - 2.1342 1.00 2590 148 0.1982 0.2147 REMARK 3 10 2.1342 - 2.0606 1.00 2606 127 0.2010 0.2388 REMARK 3 11 2.0606 - 1.9961 1.00 2586 142 0.2141 0.2419 REMARK 3 12 1.9961 - 1.9391 1.00 2579 153 0.2320 0.2593 REMARK 3 13 1.9391 - 1.8880 1.00 2565 143 0.2784 0.3285 REMARK 3 14 1.8880 - 1.8420 1.00 2603 124 0.3418 0.3698 REMARK 3 15 1.8420 - 1.8001 1.00 2569 159 0.4707 0.4316 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.260 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3301 REMARK 3 ANGLE : 0.893 4490 REMARK 3 CHIRALITY : 0.050 511 REMARK 3 PLANARITY : 0.004 563 REMARK 3 DIHEDRAL : 11.787 1985 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 666 THROUGH 701 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.9461 50.4877 135.5243 REMARK 3 T TENSOR REMARK 3 T11: 0.0907 T22: 0.1212 REMARK 3 T33: 0.0105 T12: 0.0116 REMARK 3 T13: -0.0116 T23: 0.0258 REMARK 3 L TENSOR REMARK 3 L11: 0.2047 L22: 0.3228 REMARK 3 L33: 0.0233 L12: 0.0707 REMARK 3 L13: -0.0158 L23: -0.0288 REMARK 3 S TENSOR REMARK 3 S11: 0.0721 S12: -0.2146 S13: -0.0190 REMARK 3 S21: 0.1927 S22: -0.0262 S23: 0.0299 REMARK 3 S31: 0.0341 S32: 0.0668 S33: 0.0405 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 702 THROUGH 735 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.8766 48.8102 123.4473 REMARK 3 T TENSOR REMARK 3 T11: 0.0764 T22: 0.0589 REMARK 3 T33: 0.0401 T12: 0.0181 REMARK 3 T13: -0.0051 T23: 0.0006 REMARK 3 L TENSOR REMARK 3 L11: 0.2852 L22: 0.3199 REMARK 3 L33: 0.0117 L12: -0.0010 REMARK 3 L13: -0.0418 L23: -0.0073 REMARK 3 S TENSOR REMARK 3 S11: 0.0111 S12: -0.0658 S13: -0.0597 REMARK 3 S21: 0.1313 S22: -0.0416 S23: -0.2214 REMARK 3 S31: 0.0661 S32: 0.0921 S33: 0.0073 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 736 THROUGH 965 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.8698 51.1889 90.8191 REMARK 3 T TENSOR REMARK 3 T11: 0.0548 T22: 0.0859 REMARK 3 T33: 0.0333 T12: 0.0179 REMARK 3 T13: 0.0691 T23: 0.0078 REMARK 3 L TENSOR REMARK 3 L11: 0.1273 L22: 0.1889 REMARK 3 L33: 0.4776 L12: -0.1069 REMARK 3 L13: -0.0520 L23: 0.1818 REMARK 3 S TENSOR REMARK 3 S11: 0.0604 S12: 0.0746 S13: -0.0406 REMARK 3 S21: -0.0563 S22: -0.0097 S23: -0.1483 REMARK 3 S31: 0.0372 S32: 0.1317 S33: 0.2578 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 966 THROUGH 1076 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.8346 30.8243 116.5079 REMARK 3 T TENSOR REMARK 3 T11: 0.0950 T22: -0.1072 REMARK 3 T33: 0.1254 T12: 0.0918 REMARK 3 T13: 0.0185 T23: 0.0493 REMARK 3 L TENSOR REMARK 3 L11: 0.2652 L22: 0.2576 REMARK 3 L33: 0.1882 L12: -0.0015 REMARK 3 L13: -0.0361 L23: -0.0259 REMARK 3 S TENSOR REMARK 3 S11: -0.0119 S12: -0.2006 S13: -0.3720 REMARK 3 S21: 0.1685 S22: -0.0453 S23: -0.1397 REMARK 3 S31: 0.1630 S32: 0.0411 S33: 0.0362 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5J81 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-APR-16. REMARK 100 THE DEPOSITION ID IS D_1000220102. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-SEP-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41365 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 9.930 REMARK 200 R MERGE (I) : 0.09400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.6500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.84500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.380 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIRAS REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: SHARP EDGES RHOMBOHEDRONS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% PEG 2000 MME, 0.1 M MES PH 6.0, REMARK 280 0.2 M (NH4)2SO4, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 48.21500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 27.83694 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 82.37000 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 48.21500 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 27.83694 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 82.37000 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 48.21500 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 27.83694 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 82.37000 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 48.21500 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 27.83694 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 82.37000 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 48.21500 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 27.83694 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 82.37000 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 48.21500 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 27.83694 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 82.37000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 55.67389 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 164.74000 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 55.67389 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 164.74000 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 55.67389 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 164.74000 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 55.67389 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 164.74000 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 55.67389 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 164.74000 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 55.67389 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 164.74000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 19780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 47830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 48.21500 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 83.51083 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -48.21500 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 83.51083 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1638 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1644 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1664 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 659 REMARK 465 THR A 660 REMARK 465 GLN A 661 REMARK 465 ASN A 662 REMARK 465 LEU A 663 REMARK 465 ASN A 664 REMARK 465 ALA A 665 REMARK 465 GLY A 1077 REMARK 465 TYR A 1078 REMARK 465 ASN A 1079 REMARK 465 GLN A 1080 REMARK 465 ALA A 1081 REMARK 465 ASP A 1082 REMARK 465 SER A 1083 REMARK 465 ASP A 1084 REMARK 465 LYS A 1085 REMARK 465 ILE A 1086 REMARK 465 PHE A 1087 REMARK 465 ASP A 1088 REMARK 465 ASP A 1089 REMARK 465 GLY A 1090 REMARK 465 ALA A 1091 REMARK 465 PRO A 1092 REMARK 465 GLU A 1093 REMARK 465 CYS A 1094 REMARK 465 GLY A 1095 REMARK 465 MET A 1096 REMARK 465 SER A 1097 REMARK 465 CYS A 1098 REMARK 465 TRP A 1099 REMARK 465 PHE A 1100 REMARK 465 LYS A 1101 REMARK 465 LYS A 1102 REMARK 465 SER A 1103 REMARK 465 GLY A 1104 REMARK 465 GLU A 1105 REMARK 465 TRP A 1106 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1599 O HOH A 1627 1.91 REMARK 500 O PHE A 901 O HOH A 1301 1.93 REMARK 500 O HOH A 1559 O HOH A 1635 1.94 REMARK 500 NZ LYS A 893 NH2 ARG A 1074 2.02 REMARK 500 NZ LYS A 904 O HOH A 1302 2.05 REMARK 500 O HOH A 1526 O HOH A 1643 2.06 REMARK 500 N ASN A 898 O HOH A 1303 2.07 REMARK 500 O HOH A 1301 O HOH A 1522 2.11 REMARK 500 O HOH A 1455 O HOH A 1625 2.13 REMARK 500 NZ LYS A 893 CZ ARG A 1074 2.14 REMARK 500 NZ LYS A 893 NH1 ARG A 1074 2.14 REMARK 500 O HOH A 1361 O HOH A 1611 2.18 REMARK 500 OD1 ASP A 959 O HOH A 1304 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1596 O HOH A 1633 15554 1.84 REMARK 500 O HOH A 1592 O HOH A 1643 2665 1.89 REMARK 500 O HOH A 1612 O HOH A 1622 3565 2.09 REMARK 500 O HOH A 1339 O HOH A 1371 2665 2.10 REMARK 500 O HOH A 1547 O HOH A 1596 16445 2.13 REMARK 500 O HOH A 1513 O HOH A 1593 15554 2.17 REMARK 500 O HOH A 1363 O HOH A 1464 2665 2.17 REMARK 500 O HOH A 1547 O HOH A 1633 6556 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 893 CD LYS A 893 CE -0.173 REMARK 500 LYS A 893 CE LYS A 893 NZ -0.277 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A1074 CD - NE - CZ ANGL. DEV. = -8.6 DEGREES REMARK 500 ARG A1074 NE - CZ - NH1 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG A1074 NE - CZ - NH2 ANGL. DEV. = 5.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 708 -58.56 -130.41 REMARK 500 CYS A 775 11.69 -142.19 REMARK 500 THR A 846 -159.46 -169.27 REMARK 500 ILE A 847 133.21 -28.87 REMARK 500 SER A 853 -3.08 79.34 REMARK 500 SER A 853 -1.96 78.54 REMARK 500 THR A 874 -61.89 -130.27 REMARK 500 THR A 874 -63.00 -129.55 REMARK 500 ARG A 967 40.37 -85.22 REMARK 500 GLU A1008 -1.47 73.31 REMARK 500 ASP A1020 -165.36 -100.76 REMARK 500 ASP A1057 -114.55 57.76 REMARK 500 REMARK 500 REMARK: NULL DBREF 5J81 A 659 1106 UNP P41266 GP_PUUMP 659 1106 SEQRES 1 A 448 GLU THR GLN ASN LEU ASN ALA GLY TRP THR ASP THR ALA SEQRES 2 A 448 HIS GLY SER GLY ILE ILE PRO MET LYS THR ASP LEU GLU SEQRES 3 A 448 LEU ASP PHE SER LEU PRO SER SER ALA SER TYR THR TYR SEQRES 4 A 448 ARG ARG GLN LEU GLN ASN PRO ALA ASN GLU GLN GLU LYS SEQRES 5 A 448 ILE PRO PHE HIS LEU GLN LEU SER LYS GLN VAL ILE HIS SEQRES 6 A 448 ALA GLU ILE GLN HIS LEU GLY HIS TRP MET ASP ALA THR SEQRES 7 A 448 PHE ASN LEU LYS THR ALA PHE HIS CYS TYR GLY SER CYS SEQRES 8 A 448 GLU LYS TYR ALA TYR PRO TRP GLN THR ALA GLY CYS PHE SEQRES 9 A 448 ILE GLU LYS ASP TYR GLU TYR GLU THR GLY TRP GLY CYS SEQRES 10 A 448 ASN PRO PRO ASP CYS PRO GLY VAL GLY THR GLY CYS THR SEQRES 11 A 448 ALA CYS GLY VAL TYR LEU ASP LYS LEU LYS SER VAL GLY SEQRES 12 A 448 LYS VAL PHE LYS ILE VAL SER LEU ARG TYR THR ARG LYS SEQRES 13 A 448 VAL CYS ILE GLN LEU GLY THR GLU GLN THR CYS LYS THR SEQRES 14 A 448 VAL ASP SER ASN ASP CYS LEU ILE THR THR SER VAL LYS SEQRES 15 A 448 VAL CYS LEU ILE GLY THR ILE SER LYS PHE GLN PRO SER SEQRES 16 A 448 ASP THR LEU LEU PHE LEU GLY PRO LEU GLN GLN GLY GLY SEQRES 17 A 448 LEU ILE PHE LYS GLN TRP CYS THR THR THR CYS GLN PHE SEQRES 18 A 448 GLY ASP PRO GLY ASP ILE MET SER THR PRO THR GLY MET SEQRES 19 A 448 LYS CYS PRO GLU LEU ASN GLY SER PHE ARG LYS LYS CYS SEQRES 20 A 448 ALA PHE ALA THR THR PRO VAL CYS GLN PHE ASP GLY ASN SEQRES 21 A 448 THR ILE SER GLY TYR LYS ARG MET ILE ALA THR LYS ASP SEQRES 22 A 448 SER PHE GLN SER PHE ASN VAL THR GLU PRO HIS ILE SER SEQRES 23 A 448 THR SER ALA LEU GLU TRP ILE ASP PRO ASP SER SER LEU SEQRES 24 A 448 ARG ASP HIS ILE ASN VAL ILE VAL SER ARG ASP LEU SER SEQRES 25 A 448 PHE GLN ASP LEU SER GLU THR PRO CYS GLN ILE ASP LEU SEQRES 26 A 448 ALA THR ALA SER ILE ASP GLY ALA TRP GLY SER GLY VAL SEQRES 27 A 448 GLY PHE ASN LEU VAL CYS THR VAL SER LEU THR GLU CYS SEQRES 28 A 448 SER ALA PHE LEU THR SER ILE LYS ALA CYS ASP ALA ALA SEQRES 29 A 448 MET CYS TYR GLY SER THR THR ALA ASN LEU VAL ARG GLY SEQRES 30 A 448 GLN ASN THR ILE HIS ILE VAL GLY LYS GLY GLY HIS SER SEQRES 31 A 448 GLY SER LYS PHE MET CYS CYS HIS ASP THR LYS CYS SER SEQRES 32 A 448 SER THR GLY LEU VAL ALA ALA ALA PRO HIS LEU ASP ARG SEQRES 33 A 448 VAL THR GLY TYR ASN GLN ALA ASP SER ASP LYS ILE PHE SEQRES 34 A 448 ASP ASP GLY ALA PRO GLU CYS GLY MET SER CYS TRP PHE SEQRES 35 A 448 LYS LYS SER GLY GLU TRP HET NAG B 1 14 HET NAG B 2 14 HET BMA B 3 11 HET P33 A1204 22 HET SO4 A1205 5 HET ACT A1206 4 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM P33 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL HETNAM SO4 SULFATE ION HETNAM ACT ACETATE ION HETSYN P33 HEPTAETHYLENE GLYCOL; PEG330 FORMUL 2 NAG 2(C8 H15 N O6) FORMUL 2 BMA C6 H12 O6 FORMUL 3 P33 C14 H30 O8 FORMUL 4 SO4 O4 S 2- FORMUL 5 ACT C2 H3 O2 1- FORMUL 6 HOH *367(H2 O) HELIX 1 AA1 ILE A 677 THR A 681 5 5 HELIX 2 AA2 SER A 748 TYR A 752 5 5 HELIX 3 AA3 TYR A 754 ALA A 759 5 6 HELIX 4 AA4 PRO A 861 GLY A 865 5 5 HELIX 5 AA5 SER A 921 THR A 929 1 9 HELIX 6 AA6 LYS A 930 PHE A 933 5 4 SHEET 1 A 4 LEU A 683 PRO A 690 0 SHEET 2 A 4 ARG A 958 VAL A 965 -1 SHEET 3 A 4 VAL A 839 ILE A 844 -1 SHEET 4 A 4 CYS A 833 ILE A 835 -1 SHEET 1 B 4 TYR A 695 LEU A 701 0 SHEET 2 B 4 ILE A 711 LEU A 717 -1 SHEET 3 B 4 THR A 812 LEU A 819 -1 SHEET 4 B 4 GLU A 822 ASP A 829 -1 SHEET 1 C 7 HIS A 942 SER A 944 0 SHEET 2 C 7 ALA A 947 TRP A 950 -1 SHEET 3 C 7 VAL A 721 HIS A 728 -1 SHEET 4 C 7 LYS A 802 THR A 812 -1 SHEET 5 C 7 THR A 855 PHE A 858 -1 SHEET 6 C 7 GLY A 866 PHE A 869 -1 SHEET 7 C 7 GLN A 934 PHE A 936 -1 SHEET 1 D 3 THR A 736 HIS A 744 0 SHEET 2 D 3 CYS A 787 ASP A 795 -1 SHEET 3 D 3 CYS A 761 GLU A 768 -1 SHEET 1 E 2 MET A 886 THR A 888 0 SHEET 2 E 2 GLY A 891 LYS A 893 -1 SHEET 1 F 2 PHE A 901 LYS A 904 0 SHEET 2 F 2 VAL A 912 PHE A 915 -1 SHEET 1 G 3 GLY A1035 GLY A1043 0 SHEET 2 G 3 PHE A 998 THR A1007 -1 SHEET 3 G 3 GLN A 980 GLY A 990 -1 SHEET 1 H 3 SER A1027 VAL A1033 0 SHEET 2 H 3 ALA A1011 CYS A1019 -1 SHEET 3 H 3 MET A1053 CYS A1055 -1 SHEET 1 I 2 GLY A 730 ASP A 734 0 SHEET 2 I 2 LYS A 798 VAL A 803 -1 SSBOND 1 CYS A 745 CYS A 780 1555 1555 2.03 SSBOND 2 CYS A 749 CYS A 787 1555 1555 2.03 SSBOND 3 CYS A 761 CYS A 894 1555 1555 2.03 SSBOND 4 CYS A 775 CYS A 905 1555 1555 2.03 SSBOND 5 CYS A 790 CYS A 913 1555 1555 2.03 SSBOND 6 CYS A 816 CYS A 825 1555 1555 2.04 SSBOND 7 CYS A 833 CYS A 842 1555 1555 2.04 SSBOND 8 CYS A 873 CYS A 877 1555 1555 2.01 SSBOND 9 CYS A 979 CYS A 1009 1555 1555 2.03 SSBOND 10 CYS A 1002 CYS A 1054 1555 1555 2.03 SSBOND 11 CYS A 1019 CYS A 1024 1555 1555 2.04 SSBOND 12 CYS A 1055 CYS A 1060 1555 1555 2.03 LINK ND2 ASN A 937 C1 NAG B 1 1555 1555 1.43 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.44 LINK O4 NAG B 2 C1 BMA B 3 1555 1555 1.48 CRYST1 96.430 96.430 247.110 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010370 0.005987 0.000000 0.00000 SCALE2 0.000000 0.011974 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004047 0.00000