PDB Short entry for 5J9H HEADER VIRAL PROTEIN 10-APR-16 5J9H TITLE CRYSTAL STRUCTURE OF GLYCOPROTEIN C FROM PUUMALA VIRUS IN THE POST- TITLE 2 FUSION CONFORMATION (PH 8.0) COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENVELOPMENT POLYPROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: M POLYPROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PUUMALA VIRUS (STRAIN P360); SOURCE 3 ORGANISM_TAXID: 39001; SOURCE 4 STRAIN: P360; SOURCE 5 GENE: GP; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_COMMON: CABBAGE LOOPER; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7111 KEYWDS HANTAVIRUS, MEMBRANE FUSION, CONFORMATIONAL CHANGES, ENVELOPED KEYWDS 2 VIRUSES, VIRUS ENTRY, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.WILLENSKY,M.DESSAU REVDAT 4 10-JAN-24 5J9H 1 HETSYN REVDAT 3 29-JUL-20 5J9H 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 09-NOV-16 5J9H 1 JRNL REVDAT 1 05-OCT-16 5J9H 0 JRNL AUTH S.WILLENSKY,H.BAR-ROGOVSKY,E.A.BIGNON,N.D.TISCHLER,Y.MODIS, JRNL AUTH 2 M.DESSAU JRNL TITL CRYSTAL STRUCTURE OF GLYCOPROTEIN C FROM A HANTAVIRUS IN THE JRNL TITL 2 POST-FUSION CONFORMATION. JRNL REF PLOS PATHOG. V. 12 05948 2016 JRNL REFN ESSN 1553-7374 JRNL PMID 27783673 JRNL DOI 10.1371/JOURNAL.PPAT.1005948 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 14611 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 780 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1064 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.64 REMARK 3 BIN R VALUE (WORKING SET) : 0.3220 REMARK 3 BIN FREE R VALUE SET COUNT : 56 REMARK 3 BIN FREE R VALUE : 0.4080 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3149 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 44 REMARK 3 SOLVENT ATOMS : 10 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 60.94 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 67.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.709 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.308 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.255 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 26.287 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.912 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3281 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2996 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4466 ; 1.271 ; 1.959 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6947 ; 0.856 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 412 ; 7.386 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 129 ;39.944 ;24.574 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 529 ;14.355 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;10.663 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 508 ; 0.070 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3674 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 730 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1651 ; 0.830 ; 4.964 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1650 ; 0.830 ; 4.962 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2062 ; 1.492 ; 7.443 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 666 A 1078 REMARK 3 ORIGIN FOR THE GROUP (A): 10.8500 -9.7190 2.2870 REMARK 3 T TENSOR REMARK 3 T11: 0.0278 T22: 0.0742 REMARK 3 T33: 0.1035 T12: -0.0262 REMARK 3 T13: -0.0256 T23: 0.0050 REMARK 3 L TENSOR REMARK 3 L11: 0.8356 L22: 0.6622 REMARK 3 L33: 0.6226 L12: -0.0474 REMARK 3 L13: -0.0547 L23: -0.0380 REMARK 3 S TENSOR REMARK 3 S11: -0.0026 S12: -0.1450 S13: -0.0569 REMARK 3 S21: 0.0274 S22: 0.0112 S23: -0.2054 REMARK 3 S31: -0.0564 S32: 0.1500 S33: -0.0086 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.00 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5J9H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-APR-16. REMARK 100 THE DEPOSITION ID IS D_1000220107. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-SEP-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15391 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 49.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.4300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.78300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.150 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 5J81 REMARK 200 REMARK 200 REMARK: SHARP AND ROUNDED EDGES, CUBIC CRYSTALS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 40% PEG 400 0.2 M LITHIUM SULPHATE 0.1 REMARK 280 M TRIS BUFFER PH 8.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X,-Y+1/2,Z REMARK 290 15555 -X+1/2,Y,-Z REMARK 290 16555 X,-Y,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z,-X,-Y+1/2 REMARK 290 19555 -Z,-X+1/2,Y REMARK 290 20555 -Z+1/2,X,-Y REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z,-X REMARK 290 23555 Y,-Z,-X+1/2 REMARK 290 24555 -Y,-Z+1/2,X REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 69.26050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.26050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 69.26050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 69.26050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 69.26050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 69.26050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 69.26050 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 69.26050 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 69.26050 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 69.26050 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 69.26050 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 69.26050 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 69.26050 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 69.26050 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 69.26050 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 69.26050 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 69.26050 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 69.26050 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 69.26050 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 69.26050 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 69.26050 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 69.26050 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 69.26050 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 69.26050 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 69.26050 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 69.26050 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 69.26050 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 69.26050 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 69.26050 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 69.26050 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 69.26050 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 69.26050 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 69.26050 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 69.26050 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 69.26050 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 69.26050 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 18570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 48750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 659 REMARK 465 THR A 660 REMARK 465 GLN A 661 REMARK 465 ASN A 662 REMARK 465 LEU A 663 REMARK 465 ASN A 664 REMARK 465 ALA A 665 REMARK 465 ASN A 1079 REMARK 465 GLN A 1080 REMARK 465 ALA A 1081 REMARK 465 ASP A 1082 REMARK 465 SER A 1083 REMARK 465 ASP A 1084 REMARK 465 LYS A 1085 REMARK 465 ILE A 1086 REMARK 465 PHE A 1087 REMARK 465 ASP A 1088 REMARK 465 ASP A 1089 REMARK 465 GLY A 1090 REMARK 465 ALA A 1091 REMARK 465 PRO A 1092 REMARK 465 GLU A 1093 REMARK 465 CYS A 1094 REMARK 465 GLY A 1095 REMARK 465 MET A 1096 REMARK 465 SER A 1097 REMARK 465 CYS A 1098 REMARK 465 TRP A 1099 REMARK 465 PHE A 1100 REMARK 465 LYS A 1101 REMARK 465 LYS A 1102 REMARK 465 SER A 1103 REMARK 465 GLY A 1104 REMARK 465 GLU A 1105 REMARK 465 TRP A 1106 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS A 873 SG CYS A 877 1.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 905 CA - CB - SG ANGL. DEV. = 8.6 DEGREES REMARK 500 PHE A 907 N - CA - CB ANGL. DEV. = 12.8 DEGREES REMARK 500 CYS A1019 CA - CB - SG ANGL. DEV. = 8.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 787 115.61 -173.44 REMARK 500 THR A 788 73.99 -106.65 REMARK 500 THR A 836 -166.20 -117.57 REMARK 500 THR A 846 176.84 -58.57 REMARK 500 ILE A 847 150.11 -45.34 REMARK 500 SER A 853 -7.27 81.00 REMARK 500 THR A 874 -78.60 -129.07 REMARK 500 LEU A 897 -74.15 -86.41 REMARK 500 ASN A 898 108.91 77.04 REMARK 500 ALA A 906 177.36 126.13 REMARK 500 ASP A1020 -156.49 -104.35 REMARK 500 ALA A1022 -74.09 -79.58 REMARK 500 ASP A1057 -113.77 53.55 REMARK 500 THR A1076 79.38 -109.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5J81 RELATED DB: PDB REMARK 900 THIS IS THE SAME MOLECULE AS IN THE ABOVE ENTRY BUT IN A DIFFERENT REMARK 900 CRYSTAL FORM, DIFFERENT PH DBREF 5J9H A 659 1106 UNP P41266 GP_PUUMP 659 1106 SEQRES 1 A 448 GLU THR GLN ASN LEU ASN ALA GLY TRP THR ASP THR ALA SEQRES 2 A 448 HIS GLY SER GLY ILE ILE PRO MET LYS THR ASP LEU GLU SEQRES 3 A 448 LEU ASP PHE SER LEU PRO SER SER ALA SER TYR THR TYR SEQRES 4 A 448 ARG ARG GLN LEU GLN ASN PRO ALA ASN GLU GLN GLU LYS SEQRES 5 A 448 ILE PRO PHE HIS LEU GLN LEU SER LYS GLN VAL ILE HIS SEQRES 6 A 448 ALA GLU ILE GLN HIS LEU GLY HIS TRP MET ASP ALA THR SEQRES 7 A 448 PHE ASN LEU LYS THR ALA PHE HIS CYS TYR GLY SER CYS SEQRES 8 A 448 GLU LYS TYR ALA TYR PRO TRP GLN THR ALA GLY CYS PHE SEQRES 9 A 448 ILE GLU LYS ASP TYR GLU TYR GLU THR GLY TRP GLY CYS SEQRES 10 A 448 ASN PRO PRO ASP CYS PRO GLY VAL GLY THR GLY CYS THR SEQRES 11 A 448 ALA CYS GLY VAL TYR LEU ASP LYS LEU LYS SER VAL GLY SEQRES 12 A 448 LYS VAL PHE LYS ILE VAL SER LEU ARG TYR THR ARG LYS SEQRES 13 A 448 VAL CYS ILE GLN LEU GLY THR GLU GLN THR CYS LYS THR SEQRES 14 A 448 VAL ASP SER ASN ASP CYS LEU ILE THR THR SER VAL LYS SEQRES 15 A 448 VAL CYS LEU ILE GLY THR ILE SER LYS PHE GLN PRO SER SEQRES 16 A 448 ASP THR LEU LEU PHE LEU GLY PRO LEU GLN GLN GLY GLY SEQRES 17 A 448 LEU ILE PHE LYS GLN TRP CYS THR THR THR CYS GLN PHE SEQRES 18 A 448 GLY ASP PRO GLY ASP ILE MET SER THR PRO THR GLY MET SEQRES 19 A 448 LYS CYS PRO GLU LEU ASN GLY SER PHE ARG LYS LYS CYS SEQRES 20 A 448 ALA PHE ALA THR THR PRO VAL CYS GLN PHE ASP GLY ASN SEQRES 21 A 448 THR ILE SER GLY TYR LYS ARG MET ILE ALA THR LYS ASP SEQRES 22 A 448 SER PHE GLN SER PHE ASN VAL THR GLU PRO HIS ILE SER SEQRES 23 A 448 THR SER ALA LEU GLU TRP ILE ASP PRO ASP SER SER LEU SEQRES 24 A 448 ARG ASP HIS ILE ASN VAL ILE VAL SER ARG ASP LEU SER SEQRES 25 A 448 PHE GLN ASP LEU SER GLU THR PRO CYS GLN ILE ASP LEU SEQRES 26 A 448 ALA THR ALA SER ILE ASP GLY ALA TRP GLY SER GLY VAL SEQRES 27 A 448 GLY PHE ASN LEU VAL CYS THR VAL SER LEU THR GLU CYS SEQRES 28 A 448 SER ALA PHE LEU THR SER ILE LYS ALA CYS ASP ALA ALA SEQRES 29 A 448 MET CYS TYR GLY SER THR THR ALA ASN LEU VAL ARG GLY SEQRES 30 A 448 GLN ASN THR ILE HIS ILE VAL GLY LYS GLY GLY HIS SER SEQRES 31 A 448 GLY SER LYS PHE MET CYS CYS HIS ASP THR LYS CYS SER SEQRES 32 A 448 SER THR GLY LEU VAL ALA ALA ALA PRO HIS LEU ASP ARG SEQRES 33 A 448 VAL THR GLY TYR ASN GLN ALA ASP SER ASP LYS ILE PHE SEQRES 34 A 448 ASP ASP GLY ALA PRO GLU CYS GLY MET SER CYS TRP PHE SEQRES 35 A 448 LYS LYS SER GLY GLU TRP HET NAG B 1 14 HET NAG B 2 14 HET BMA B 3 11 HET SO4 A1201 5 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM SO4 SULFATE ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 2 NAG 2(C8 H15 N O6) FORMUL 2 BMA C6 H12 O6 FORMUL 3 SO4 O4 S 2- FORMUL 4 HOH *10(H2 O) HELIX 1 1 PRO A 678 LYS A 680 5 3 HELIX 2 2 PRO A 755 THR A 758 5 4 HELIX 3 3 LEU A 862 GLN A 864 5 3 HELIX 4 4 GLY A 922 SER A 932 1 11 SHEET 1 A 4 LEU A 683 PRO A 690 0 SHEET 2 A 4 ARG A 958 VAL A 965 -1 SHEET 3 A 4 VAL A 839 ILE A 844 -1 SHEET 4 A 4 CYS A 833 ILE A 835 -1 SHEET 1 B 4 TYR A 695 GLN A 702 0 SHEET 2 B 4 LYS A 710 LEU A 717 -1 SHEET 3 B 4 THR A 812 LEU A 819 -1 SHEET 4 B 4 GLU A 822 ASP A 829 -1 SHEET 1 C 6 ALA A 947 TRP A 950 0 SHEET 2 C 6 VAL A 721 HIS A 728 -1 SHEET 3 C 6 LYS A 802 THR A 812 -1 SHEET 4 C 6 THR A 855 PHE A 858 -1 SHEET 5 C 6 GLY A 866 PHE A 869 -1 SHEET 6 C 6 GLN A 934 PHE A 936 -1 SHEET 1 D 3 THR A 736 THR A 741 0 SHEET 2 D 3 CYS A 790 ASP A 795 -1 SHEET 3 D 3 CYS A 761 LYS A 765 -1 SHEET 1 E 2 MET A 886 THR A 888 0 SHEET 2 E 2 GLY A 891 LYS A 893 -1 SHEET 1 F 2 PHE A 901 LYS A 904 0 SHEET 2 F 2 VAL A 912 PHE A 915 -1 SHEET 1 G 3 THR A1038 GLY A1043 0 SHEET 2 G 3 PHE A 998 THR A1007 -1 SHEET 3 G 3 GLN A 980 GLY A 990 -1 SHEET 1 H 3 MET A1053 CYS A1055 0 SHEET 2 H 3 ALA A1011 CYS A1019 -1 SHEET 3 H 3 CYS A1024 VAL A1033 -1 SHEET 1 I 2 GLY A 730 ASP A 734 0 SHEET 2 I 2 LYS A 798 VAL A 803 -1 SSBOND 1 CYS A 745 CYS A 780 1555 1555 2.03 SSBOND 2 CYS A 749 CYS A 787 1555 1555 2.04 SSBOND 3 CYS A 761 CYS A 894 1555 1555 2.03 SSBOND 4 CYS A 775 CYS A 905 1555 1555 1.86 SSBOND 5 CYS A 790 CYS A 913 1555 1555 2.01 SSBOND 6 CYS A 816 CYS A 825 1555 1555 2.06 SSBOND 7 CYS A 833 CYS A 842 1555 1555 2.07 SSBOND 8 CYS A 979 CYS A 1009 1555 1555 2.06 SSBOND 9 CYS A 1002 CYS A 1054 1555 1555 2.04 SSBOND 10 CYS A 1019 CYS A 1024 1555 1555 2.11 SSBOND 11 CYS A 1055 CYS A 1060 1555 1555 2.03 LINK ND2 ASN A 937 C1 NAG B 1 1555 1555 1.46 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.46 LINK O4 NAG B 2 C1 BMA B 3 1555 1555 1.46 CRYST1 138.521 138.521 138.521 90.00 90.00 90.00 I 21 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007219 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007219 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007219 0.00000