PDB Short entry for 5JAX HEADER TRANSFERASE/TRANSFERASE INHIBITOR 12-APR-16 5JAX TITLE PKG I'S CARBOYL TERMINAL CYCLIC NUCLEOTIDE BINDING DOMAIN (CNB-B) IN A TITLE 2 COMPLEX WITH 8-BR-CGMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: CGMP-DEPENDENT PROTEIN KINASE 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 219-351; COMPND 5 SYNONYM: CGK1,CGMP-DEPENDENT PROTEIN KINASE I,CGKI; COMPND 6 EC: 2.7.11.12; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PRKG1, PRKG1B, PRKGR1A, PRKGR1B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BINDING SITES, CYCLIC AMP, CYCLIC GMP, CYCLIC GMP-DEPENDENT PROTEIN KEYWDS 2 KINASE TYPE II, MUTAGENESIS, SITE-DIRECTED, PROTEIN BINDING, KEYWDS 3 ANALOGS, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.C.CAMPBELL,B.SANKARAN,C.W.KIM REVDAT 3 27-SEP-17 5JAX 1 JRNL REVDAT 2 23-AUG-17 5JAX 1 JRNL REVDAT 1 19-APR-17 5JAX 0 JRNL AUTH J.C.CAMPBELL,P.HENNING,E.FRANZ,B.SANKARAN,F.W.HERBERG,C.KIM JRNL TITL STRUCTURAL BASIS OF ANALOG SPECIFICITY IN PKG I AND II. JRNL REF ACS CHEM. BIOL. V. 12 2388 2017 JRNL REFN ESSN 1554-8937 JRNL PMID 28793191 JRNL DOI 10.1021/ACSCHEMBIO.7B00369 REMARK 2 REMARK 2 RESOLUTION. 1.49 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.49 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.74 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 19698 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1970 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.7544 - 3.5810 0.99 1393 155 0.1477 0.1685 REMARK 3 2 3.5810 - 2.8425 1.00 1310 146 0.1576 0.1869 REMARK 3 3 2.8425 - 2.4832 1.00 1286 142 0.1653 0.2155 REMARK 3 4 2.4832 - 2.2562 1.00 1276 141 0.1583 0.2019 REMARK 3 5 2.2562 - 2.0945 1.00 1267 142 0.1611 0.2031 REMARK 3 6 2.0945 - 1.9710 1.00 1257 140 0.1611 0.2112 REMARK 3 7 1.9710 - 1.8723 1.00 1256 139 0.1759 0.2044 REMARK 3 8 1.8723 - 1.7908 1.00 1249 138 0.1805 0.2413 REMARK 3 9 1.7908 - 1.7219 1.00 1247 139 0.1870 0.2209 REMARK 3 10 1.7219 - 1.6624 1.00 1233 137 0.2025 0.2152 REMARK 3 11 1.6624 - 1.6105 1.00 1241 139 0.2075 0.2291 REMARK 3 12 1.6105 - 1.5644 1.00 1237 136 0.2049 0.2202 REMARK 3 13 1.5644 - 1.5232 1.00 1244 139 0.2233 0.2567 REMARK 3 14 1.5232 - 1.4861 1.00 1232 137 0.2444 0.2620 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.190 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 1069 REMARK 3 ANGLE : 1.322 1462 REMARK 3 CHIRALITY : 0.075 164 REMARK 3 PLANARITY : 0.011 185 REMARK 3 DIHEDRAL : 11.088 385 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 222 THROUGH 233 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.5913 15.8411 -2.3677 REMARK 3 T TENSOR REMARK 3 T11: 0.2346 T22: 0.3439 REMARK 3 T33: 0.2093 T12: -0.0009 REMARK 3 T13: -0.0060 T23: -0.0688 REMARK 3 L TENSOR REMARK 3 L11: 4.5361 L22: 8.1117 REMARK 3 L33: 5.7069 L12: -0.8547 REMARK 3 L13: -1.7534 L23: 0.5290 REMARK 3 S TENSOR REMARK 3 S11: 0.0549 S12: -0.8024 S13: 0.2500 REMARK 3 S21: 0.5378 S22: -0.1997 S23: 0.1506 REMARK 3 S31: -0.5322 S32: 0.0087 S33: 0.1236 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 234 THROUGH 257 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.1062 13.3376 -8.6665 REMARK 3 T TENSOR REMARK 3 T11: 0.1036 T22: 0.2164 REMARK 3 T33: 0.1354 T12: 0.0066 REMARK 3 T13: -0.0009 T23: -0.0367 REMARK 3 L TENSOR REMARK 3 L11: 4.4006 L22: 3.4338 REMARK 3 L33: 0.7048 L12: 2.9575 REMARK 3 L13: -1.1241 L23: -0.6732 REMARK 3 S TENSOR REMARK 3 S11: 0.0064 S12: -0.2428 S13: 0.2173 REMARK 3 S21: 0.1675 S22: -0.0218 S23: 0.0547 REMARK 3 S31: -0.0034 S32: 0.0083 S33: 0.0150 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 258 THROUGH 339 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.9761 -0.7231 -12.6579 REMARK 3 T TENSOR REMARK 3 T11: 0.0927 T22: 0.1183 REMARK 3 T33: 0.1000 T12: 0.0279 REMARK 3 T13: -0.0002 T23: 0.0087 REMARK 3 L TENSOR REMARK 3 L11: 2.9702 L22: 2.5655 REMARK 3 L33: 3.1010 L12: 0.2383 REMARK 3 L13: 0.0830 L23: 0.1712 REMARK 3 S TENSOR REMARK 3 S11: -0.0141 S12: -0.1746 S13: -0.1755 REMARK 3 S21: 0.1330 S22: -0.0116 S23: -0.0055 REMARK 3 S31: 0.3671 S32: 0.0213 S33: 0.0228 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 340 THROUGH 351 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.0531 1.6574 -16.9953 REMARK 3 T TENSOR REMARK 3 T11: 0.1703 T22: 0.2235 REMARK 3 T33: 0.3270 T12: 0.0722 REMARK 3 T13: -0.0016 T23: 0.0244 REMARK 3 L TENSOR REMARK 3 L11: 3.3777 L22: 7.9592 REMARK 3 L33: 5.1514 L12: 4.0957 REMARK 3 L13: -0.5178 L23: -3.2360 REMARK 3 S TENSOR REMARK 3 S11: -0.0003 S12: 0.0105 S13: -0.9523 REMARK 3 S21: -0.0423 S22: -0.0961 S23: -0.7907 REMARK 3 S31: 0.5483 S32: 0.6213 S33: 0.0817 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5JAX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-APR-16. REMARK 100 THE DEPOSITION ID IS D_1000220231. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-FEB-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99993 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19769 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.486 REMARK 200 RESOLUTION RANGE LOW (A) : 51.290 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 26.30 REMARK 200 R MERGE (I) : 0.10500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 0.9990 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 4KU7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 400, 200 MM CAAC, 0.1M NAAC PH REMARK 280 4.5-4.8, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 301K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.29500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 23.50500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 23.50500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 25.64750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 23.50500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 23.50500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 76.94250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 23.50500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 23.50500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 25.64750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 23.50500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 23.50500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 76.94250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 51.29500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 503 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 519 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 618 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 619 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 217 REMARK 465 SER A 218 REMARK 465 THR A 219 REMARK 465 GLY A 220 REMARK 465 LEU A 221 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 222 CG1 CG2 CD1 REMARK 470 GLU A 226 CD OE1 OE2 REMARK 470 GLU A 229 CG CD OE1 OE2 REMARK 470 GLU A 258 CD OE1 OE2 REMARK 470 LYS A 278 CE NZ REMARK 470 ARG A 285 NH1 NH2 REMARK 470 GLU A 286 CG CD OE1 OE2 REMARK 470 ASP A 287 CG OD1 OD2 REMARK 470 SER A 288 OG REMARK 470 SER A 290 OG REMARK 470 GLU A 291 CG CD OE1 OE2 REMARK 470 ASP A 292 CG OD1 OD2 REMARK 470 LYS A 301 NZ REMARK 470 LYS A 308 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 502 O HOH A 504 1.75 REMARK 500 O HOH A 523 O HOH A 585 1.84 REMARK 500 O HOH A 566 O HOH A 607 1.91 REMARK 500 O HOH A 607 O HOH A 616 1.92 REMARK 500 O HOH A 566 O HOH A 616 2.05 REMARK 500 O HOH A 612 O HOH A 625 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 547 O HOH A 559 4444 2.02 REMARK 500 O HOH A 514 O HOH A 609 6554 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 271 17.05 -145.17 REMARK 500 GLU A 324 -171.00 174.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLN A 311 -22.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 403 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 271 OD2 REMARK 620 2 ASP A 314 OD2 132.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 404 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 308 O REMARK 620 2 GLN A 311 O 80.4 REMARK 620 3 GLU A 313 O 97.1 98.7 REMARK 620 4 HOH A 533 O 99.0 178.4 82.8 REMARK 620 5 HOH A 591 O 157.4 82.3 99.7 98.0 REMARK 620 6 HOH A 578 O 90.2 77.2 170.9 101.4 71.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 342 O REMARK 620 2 ASP A 344 OD1 92.6 REMARK 620 3 HOH A 516 O 81.0 76.7 REMARK 620 4 HOH A 573 O 80.4 159.7 83.4 REMARK 620 5 HOH A 606 O 176.5 90.7 98.6 96.1 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6J7 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 404 DBREF 5JAX A 219 351 UNP Q13976 KGP1_HUMAN 219 351 SEQADV 5JAX GLY A 217 UNP Q13976 EXPRESSION TAG SEQADV 5JAX SER A 218 UNP Q13976 EXPRESSION TAG SEQRES 1 A 135 GLY SER THR GLY LEU ILE LYS HIS THR GLU TYR MET GLU SEQRES 2 A 135 PHE LEU LYS SER VAL PRO THR PHE GLN SER LEU PRO GLU SEQRES 3 A 135 GLU ILE LEU SER LYS LEU ALA ASP VAL LEU GLU GLU THR SEQRES 4 A 135 HIS TYR GLU ASN GLY GLU TYR ILE ILE ARG GLN GLY ALA SEQRES 5 A 135 ARG GLY ASP THR PHE PHE ILE ILE SER LYS GLY THR VAL SEQRES 6 A 135 ASN VAL THR ARG GLU ASP SER PRO SER GLU ASP PRO VAL SEQRES 7 A 135 PHE LEU ARG THR LEU GLY LYS GLY ASP TRP PHE GLY GLU SEQRES 8 A 135 LYS ALA LEU GLN GLY GLU ASP VAL ARG THR ALA ASN VAL SEQRES 9 A 135 ILE ALA ALA GLU ALA VAL THR CYS LEU VAL ILE ASP ARG SEQRES 10 A 135 ASP SER PHE LYS HIS LEU ILE GLY GLY LEU ASP ASP VAL SEQRES 11 A 135 SER ASN LYS ALA TYR HET 6J7 A 401 34 HET CA A 402 1 HET CA A 403 1 HET NA A 404 1 HETNAM 6J7 2-AMINO-8-BROMO-9-[(2R,4AR,6R,7R,7AS)-2,7-DIHYDROXY-2- HETNAM 2 6J7 OXOTETRAHYDRO-2H,4H-2LAMBDA~5~-FURO[3,2-D][1,3, HETNAM 3 6J7 2]DIOXAPHOSPHININ-6-YL]-1,9-DIHYDRO-6H-PURIN-6-ONE HETNAM CA CALCIUM ION HETNAM NA SODIUM ION FORMUL 2 6J7 C10 H11 BR N5 O7 P FORMUL 3 CA 2(CA 2+) FORMUL 5 NA NA 1+ FORMUL 6 HOH *127(H2 O) HELIX 1 AA1 ILE A 222 LYS A 232 1 11 HELIX 2 AA2 VAL A 234 SER A 239 1 6 HELIX 3 AA3 PRO A 241 LEU A 252 1 12 HELIX 4 AA4 GLU A 307 GLN A 311 5 5 HELIX 5 AA5 ARG A 333 ILE A 340 1 8 HELIX 6 AA6 LEU A 343 ASN A 348 1 6 SHEET 1 AA1 4 GLU A 253 TYR A 257 0 SHEET 2 AA1 4 VAL A 326 ASP A 332 -1 O VAL A 330 N GLU A 253 SHEET 3 AA1 4 THR A 272 LYS A 278 -1 N ILE A 275 O LEU A 329 SHEET 4 AA1 4 TRP A 304 PHE A 305 -1 O PHE A 305 N PHE A 274 SHEET 1 AA2 4 TYR A 262 ILE A 264 0 SHEET 2 AA2 4 ASN A 319 ALA A 322 -1 O VAL A 320 N ILE A 263 SHEET 3 AA2 4 VAL A 281 ARG A 285 -1 N THR A 284 O ASN A 319 SHEET 4 AA2 4 VAL A 294 LEU A 299 -1 O LEU A 296 N VAL A 283 LINK OD2 ASP A 271 CA CA A 403 1555 1555 2.77 LINK O LYS A 308 NA NA A 404 1555 1555 2.28 LINK O BGLN A 311 NA NA A 404 1555 1555 2.39 LINK O GLU A 313 NA NA A 404 1555 1555 2.43 LINK OD2 ASP A 314 CA CA A 403 1555 1555 2.80 LINK O GLY A 342 CA CA A 402 1555 1555 2.23 LINK OD1 ASP A 344 CA CA A 402 1555 1555 2.93 LINK NA NA A 404 O HOH A 533 1555 1555 2.29 LINK NA NA A 404 O HOH A 591 1555 1555 2.42 LINK NA NA A 404 O HOH A 578 1555 1555 2.29 LINK CA CA A 402 O HOH A 516 1555 6554 2.33 LINK CA CA A 402 O HOH A 573 1555 6554 2.56 LINK CA CA A 402 O HOH A 606 1555 6554 2.15 SITE 1 AC1 15 LEU A 296 ARG A 297 LEU A 299 PHE A 305 SITE 2 AC1 15 GLY A 306 GLU A 307 LYS A 308 ALA A 309 SITE 3 AC1 15 ARG A 316 THR A 317 ALA A 318 TYR A 351 SITE 4 AC1 15 HOH A 530 HOH A 550 HOH A 569 SITE 1 AC2 5 GLY A 342 ASP A 344 HOH A 516 HOH A 573 SITE 2 AC2 5 HOH A 606 SITE 1 AC3 4 LYS A 232 ARG A 269 ASP A 271 ASP A 314 SITE 1 AC4 6 LYS A 308 GLN A 311 GLU A 313 HOH A 533 SITE 2 AC4 6 HOH A 578 HOH A 591 CRYST1 47.010 47.010 102.590 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021272 0.000000 0.000000 0.00000 SCALE2 0.000000 0.021272 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009748 0.00000