PDB Short entry for 5JEI HEADER TRANSPORT PROTEIN 18-APR-16 5JEI TITLE CRYSTAL STRUCTURE OF THE GLUA2 LBD IN COMPLEX WITH FW COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTAMATE RECEPTOR 2,GLUTAMATE RECEPTOR 2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GLUR-2,AMPA-SELECTIVE GLUTAMATE RECEPTOR 2,GLUR-B,GLUR-K2, COMPND 5 GLUTAMATE RECEPTOR IONOTROPIC,AMPA 2,GLUA2,GLUR-2,AMPA-SELECTIVE COMPND 6 GLUTAMATE RECEPTOR 2,GLUR-B,GLUR-K2,GLUTAMATE RECEPTOR IONOTROPIC, COMPND 7 AMPA 2,GLUA2; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: GRIA2, GLUR2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ORIGAMI KEYWDS TRANSPORT PROTEIN, LIGAND BINDING DOMAIN, GLUTAMATE RECEPTOR 2 EXPDTA X-RAY DIFFRACTION AUTHOR C.EIBL,H.SALAZAR,M.CHEBLI,A.J.R.PLESTED REVDAT 5 10-JAN-24 5JEI 1 REMARK REVDAT 4 31-JAN-18 5JEI 1 REMARK REVDAT 3 06-SEP-17 5JEI 1 REMARK REVDAT 2 01-MAR-17 5JEI 1 JRNL REVDAT 1 22-FEB-17 5JEI 0 JRNL AUTH H.SALAZAR,C.EIBL,M.CHEBLI,A.PLESTED JRNL TITL MECHANISM OF PARTIAL AGONISM IN AMPA-TYPE GLUTAMATE JRNL TITL 2 RECEPTORS. JRNL REF NAT COMMUN V. 8 14327 2017 JRNL REFN ESSN 2041-1723 JRNL PMID 28211453 JRNL DOI 10.1038/NCOMMS14327 REMARK 2 REMARK 2 RESOLUTION. 1.23 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.23 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.37 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 75826 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.122 REMARK 3 R VALUE (WORKING SET) : 0.121 REMARK 3 FREE R VALUE : 0.147 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3791 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.3854 - 3.6857 0.98 2958 155 0.1532 0.1672 REMARK 3 2 3.6857 - 2.9260 0.99 2816 149 0.1359 0.1387 REMARK 3 3 2.9260 - 2.5563 0.99 2798 147 0.1190 0.1436 REMARK 3 4 2.5563 - 2.3227 0.99 2766 145 0.1042 0.1304 REMARK 3 5 2.3227 - 2.1562 0.99 2766 146 0.0921 0.1104 REMARK 3 6 2.1562 - 2.0291 0.98 2724 143 0.0901 0.1205 REMARK 3 7 2.0291 - 1.9275 0.98 2702 143 0.0907 0.1217 REMARK 3 8 1.9275 - 1.8436 0.98 2726 143 0.0890 0.1150 REMARK 3 9 1.8436 - 1.7727 0.98 2701 142 0.0931 0.1187 REMARK 3 10 1.7727 - 1.7115 0.98 2683 141 0.0912 0.1212 REMARK 3 11 1.7115 - 1.6580 0.98 2706 143 0.0887 0.1376 REMARK 3 12 1.6580 - 1.6106 0.98 2690 141 0.0897 0.1332 REMARK 3 13 1.6106 - 1.5682 0.98 2677 141 0.0944 0.1353 REMARK 3 14 1.5682 - 1.5299 0.97 2640 139 0.0933 0.1233 REMARK 3 15 1.5299 - 1.4951 0.97 2672 141 0.1010 0.1300 REMARK 3 16 1.4951 - 1.4633 0.97 2668 140 0.1088 0.1614 REMARK 3 17 1.4633 - 1.4341 0.96 2585 136 0.1229 0.1895 REMARK 3 18 1.4341 - 1.4070 0.96 2641 139 0.1313 0.1947 REMARK 3 19 1.4070 - 1.3819 0.96 2613 138 0.1496 0.2016 REMARK 3 20 1.3819 - 1.3584 0.96 2637 139 0.1562 0.2177 REMARK 3 21 1.3584 - 1.3365 0.95 2609 137 0.1549 0.1817 REMARK 3 22 1.3365 - 1.3160 0.96 2605 137 0.1601 0.1850 REMARK 3 23 1.3160 - 1.2966 0.94 2571 135 0.1693 0.2046 REMARK 3 24 1.2966 - 1.2783 0.95 2540 134 0.1797 0.2194 REMARK 3 25 1.2783 - 1.2611 0.93 2558 135 0.1912 0.2477 REMARK 3 26 1.2611 - 1.2447 0.94 2538 133 0.2011 0.2180 REMARK 3 27 1.2447 - 1.2291 0.89 2445 129 0.2167 0.2597 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.100 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 13.100 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 2220 REMARK 3 ANGLE : 1.492 2949 REMARK 3 CHIRALITY : 0.086 312 REMARK 3 PLANARITY : 0.008 361 REMARK 3 DIHEDRAL : 16.137 865 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5JEI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-APR-16. REMARK 100 THE DEPOSITION ID IS D_1000204094. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-MAR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918 REMARK 200 MONOCHROMATOR : KMC-1 REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 75826 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.229 REMARK 200 RESOLUTION RANGE LOW (A) : 32.374 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 200 DATA REDUNDANCY : 4.070 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.5200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.23 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.70000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.260 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1FTJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50.0 % V/V PEG 200, 200 MM SODIUM REMARK 280 CHLORIDE, 100 MM SODIUM/POTASSIUM PHOSPHATE PH 6.2, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 63.23250 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 22.21250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 63.23250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 22.21250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 252.93000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 88.85000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 252.93000 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 44.42500 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 1.000000 0.000000 -44.42500 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 405 O HOH A 415 2.07 REMARK 500 O HOH A 667 O HOH A 730 2.08 REMARK 500 O HOH A 774 O HOH A 775 2.09 REMARK 500 O HOH A 492 O HOH A 624 2.13 REMARK 500 O HOH A 688 O HOH A 759 2.15 REMARK 500 O HOH A 617 O HOH A 668 2.15 REMARK 500 O HOH A 441 O HOH A 580 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 679 O HOH A 679 2785 2.00 REMARK 500 O HOH A 649 O HOH A 649 2775 2.06 REMARK 500 O HOH A 482 O HOH A 505 1554 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 773 DISTANCE = 6.58 ANGSTROMS REMARK 525 HOH A 774 DISTANCE = 6.65 ANGSTROMS REMARK 525 HOH A 775 DISTANCE = 7.95 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PG4 A 307 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FWD A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TOE A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG0 A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ETE A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ETE A 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 312 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 313 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 314 DBREF 5JEI A 3 117 UNP P19491 GRIA2_RAT 413 527 DBREF 5JEI A 120 264 UNP P19491 GRIA2_RAT 653 797 SEQADV 5JEI GLY A 1 UNP P19491 EXPRESSION TAG SEQADV 5JEI ALA A 2 UNP P19491 EXPRESSION TAG SEQADV 5JEI GLY A 118 UNP P19491 LINKER SEQADV 5JEI THR A 119 UNP P19491 LINKER SEQADV 5JEI CYS A 154 UNP P19491 VAL 687 CONFLICT SEQRES 1 A 264 GLY ALA ASN LYS THR VAL VAL VAL THR THR ILE LEU GLU SEQRES 2 A 264 SER PRO TYR VAL MET MET LYS LYS ASN HIS GLU MET LEU SEQRES 3 A 264 GLU GLY ASN GLU ARG TYR GLU GLY TYR CYS VAL ASP LEU SEQRES 4 A 264 ALA ALA GLU ILE ALA LYS HIS CYS GLY PHE LYS TYR LYS SEQRES 5 A 264 LEU THR ILE VAL GLY ASP GLY LYS TYR GLY ALA ARG ASP SEQRES 6 A 264 ALA ASP THR LYS ILE TRP ASN GLY MET VAL GLY GLU LEU SEQRES 7 A 264 VAL TYR GLY LYS ALA ASP ILE ALA ILE ALA PRO LEU THR SEQRES 8 A 264 ILE THR LEU VAL ARG GLU GLU VAL ILE ASP PHE SER LYS SEQRES 9 A 264 PRO PHE MET SER LEU GLY ILE SER ILE MET ILE LYS LYS SEQRES 10 A 264 GLY THR PRO ILE GLU SER ALA GLU ASP LEU SER LYS GLN SEQRES 11 A 264 THR GLU ILE ALA TYR GLY THR LEU ASP SER GLY SER THR SEQRES 12 A 264 LYS GLU PHE PHE ARG ARG SER LYS ILE ALA CYS PHE ASP SEQRES 13 A 264 LYS MET TRP THR TYR MET ARG SER ALA GLU PRO SER VAL SEQRES 14 A 264 PHE VAL ARG THR THR ALA GLU GLY VAL ALA ARG VAL ARG SEQRES 15 A 264 LYS SER LYS GLY LYS TYR ALA TYR LEU LEU GLU SER THR SEQRES 16 A 264 MET ASN GLU TYR ILE GLU GLN ARG LYS PRO CYS ASP THR SEQRES 17 A 264 MET LYS VAL GLY GLY ASN LEU ASP SER LYS GLY TYR GLY SEQRES 18 A 264 ILE ALA THR PRO LYS GLY SER SER LEU GLY ASN ALA VAL SEQRES 19 A 264 ASN LEU ALA VAL LEU LYS LEU ASN GLU GLN GLY LEU LEU SEQRES 20 A 264 ASP LYS LEU LYS ASN LYS TRP TRP TYR ASP LYS GLY GLU SEQRES 21 A 264 CYS GLY SER GLY HET FWD A 301 22 HET PO4 A 302 5 HET PO4 A 303 5 HET PG4 A 304 29 HET PEG A 305 15 HET TOE A 306 27 HET PG4 A 307 15 HET PG0 A 308 20 HET ETE A 309 34 HET ETE A 310 33 HET PEG A 311 16 HET EDO A 312 10 HET PEG A 313 16 HET NA A 314 1 HETNAM FWD 2-AMINO-3-(5-FLUORO-2,4-DIOXO-3,4-DIHYDRO-2H-PYRIMIDIN- HETNAM 2 FWD 1-YL)-PROPIONIC ACID HETNAM PO4 PHOSPHATE ION HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM TOE 2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXYL HETNAM PG0 2-(2-METHOXYETHOXY)ETHANOL HETNAM ETE 2-{2-[2-2-(METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL HETNAM EDO 1,2-ETHANEDIOL HETNAM NA SODIUM ION HETSYN FWD FLUORO-WILLARDIINE HETSYN PG0 PEG 6000 HETSYN EDO ETHYLENE GLYCOL FORMUL 2 FWD C7 H8 F N3 O4 FORMUL 3 PO4 2(O4 P 3-) FORMUL 5 PG4 2(C8 H18 O5) FORMUL 6 PEG 3(C4 H10 O3) FORMUL 7 TOE C7 H16 O4 FORMUL 9 PG0 C5 H12 O3 FORMUL 10 ETE 2(C9 H20 O5) FORMUL 13 EDO C2 H6 O2 FORMUL 15 NA NA 1+ FORMUL 16 HOH *375(H2 O) HELIX 1 AA1 ASN A 22 LEU A 26 5 5 HELIX 2 AA2 GLU A 27 GLU A 30 5 4 HELIX 3 AA3 GLY A 34 GLY A 48 1 15 HELIX 4 AA4 ASN A 72 TYR A 80 1 9 HELIX 5 AA5 THR A 93 GLU A 98 1 6 HELIX 6 AA6 SER A 123 LYS A 129 1 7 HELIX 7 AA7 GLY A 141 SER A 150 1 10 HELIX 8 AA8 ILE A 152 ARG A 163 1 12 HELIX 9 AA9 THR A 173 SER A 184 1 12 HELIX 10 AB1 SER A 194 GLU A 201 1 8 HELIX 11 AB2 SER A 229 GLN A 244 1 16 HELIX 12 AB3 GLY A 245 TYR A 256 1 12 SHEET 1 AA1 3 TYR A 51 ILE A 55 0 SHEET 2 AA1 3 VAL A 6 THR A 10 1 N VAL A 8 O THR A 54 SHEET 3 AA1 3 ILE A 85 ALA A 86 1 O ILE A 85 N THR A 9 SHEET 1 AA2 2 MET A 18 MET A 19 0 SHEET 2 AA2 2 TYR A 32 GLU A 33 -1 O GLU A 33 N MET A 18 SHEET 1 AA3 2 ILE A 100 PHE A 102 0 SHEET 2 AA3 2 ALA A 223 PRO A 225 -1 O THR A 224 N ASP A 101 SHEET 1 AA4 2 MET A 107 LEU A 109 0 SHEET 2 AA4 2 LYS A 218 TYR A 220 -1 O LYS A 218 N LEU A 109 SHEET 1 AA5 4 ALA A 134 GLY A 136 0 SHEET 2 AA5 4 TYR A 188 GLU A 193 1 O LEU A 191 N GLY A 136 SHEET 3 AA5 4 ILE A 111 LYS A 116 -1 N MET A 114 O TYR A 190 SHEET 4 AA5 4 THR A 208 VAL A 211 -1 O MET A 209 N ILE A 115 SSBOND 1 CYS A 206 CYS A 261 1555 1555 2.05 LINK OE1 GLU A 198 NA NA A 314 1555 1555 3.12 CISPEP 1 SER A 14 PRO A 15 0 -2.18 CISPEP 2 GLU A 166 PRO A 167 0 -2.00 CISPEP 3 LYS A 204 PRO A 205 0 5.86 SITE 1 AC1 16 TYR A 61 PRO A 89 LEU A 90 THR A 91 SITE 2 AC1 16 ARG A 96 LEU A 138 GLY A 141 SER A 142 SITE 3 AC1 16 THR A 143 THR A 174 LEU A 192 GLU A 193 SITE 4 AC1 16 MET A 196 HOH A 464 HOH A 476 HOH A 612 SITE 1 AC2 8 LYS A 20 GLU A 30 TRP A 159 ARG A 163 SITE 2 AC2 8 HOH A 411 HOH A 452 HOH A 495 HOH A 595 SITE 1 AC3 5 HIS A 23 GLU A 24 ARG A 31 HOH A 529 SITE 2 AC3 5 HOH A 678 SITE 1 AC4 6 GLU A 201 LYS A 210 GLY A 227 ETE A 310 SITE 2 AC4 6 HOH A 410 HOH A 559 SITE 1 AC5 6 ASN A 214 ASP A 216 SER A 217 ASP A 248 SITE 2 AC5 6 HOH A 426 HOH A 540 SITE 1 AC6 10 PRO A 105 SER A 217 LYS A 218 GLY A 219 SITE 2 AC6 10 ASN A 242 ASP A 248 HOH A 431 HOH A 625 SITE 3 AC6 10 HOH A 649 HOH A 655 SITE 1 AC7 4 LYS A 144 TRP A 159 PHE A 170 HOH A 417 SITE 1 AC8 7 LYS A 4 VAL A 7 GLY A 81 LYS A 82 SITE 2 AC8 7 ASP A 84 PRO A 205 HOH A 509 SITE 1 AC9 7 VAL A 6 SER A 228 SER A 229 GLY A 262 SITE 2 AC9 7 SER A 263 HOH A 607 HOH A 627 SITE 1 AD1 13 LYS A 117 GLU A 201 GLN A 202 PRO A 225 SITE 2 AD1 13 LYS A 226 SER A 228 CYS A 261 GLY A 262 SITE 3 AD1 13 SER A 263 PG4 A 304 HOH A 449 HOH A 711 SITE 4 AD1 13 HOH A 752 SITE 1 AD2 5 GLU A 33 THR A 160 HOH A 401 HOH A 428 SITE 2 AD2 5 HOH A 637 SITE 1 AD3 5 SER A 14 HOH A 450 HOH A 463 HOH A 466 SITE 2 AD3 5 HOH A 516 SITE 1 AD4 6 THR A 131 ILE A 133 TYR A 161 HOH A 405 SITE 2 AD4 6 HOH A 408 HOH A 456 SITE 1 AD5 1 GLU A 198 CRYST1 126.465 44.425 47.276 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007907 0.000000 0.000000 0.00000 SCALE2 0.000000 0.022510 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021152 0.00000