PDB Short entry for 5JKA HEADER CELL ADHESION 26-APR-16 5JKA TITLE CRYSTAL STRUCTURE OF HUMAN JUNO (CRYSTAL FORM 1) COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPERM-EGG FUSION PROTEIN JUNO; COMPND 3 CHAIN: B, A; COMPND 4 FRAGMENT: UNP RESIDUES 20-228; COMPND 5 SYNONYM: FOLATE RECEPTOR 4,FOLATE RECEPTOR DELTA,FR-DELTA,IZUMO1 COMPND 6 RECEPTOR PROTEIN JUNO; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: IZUMO1R, FOLR4, JUNO; SOURCE 6 EXPRESSION_SYSTEM: DROSOPHILA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7215 KEYWDS FERTILIZATION, IZUMO1, JUNO, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR U.OHTO,H.ISHIDA,T.SHIMIZU REVDAT 5 08-NOV-23 5JKA 1 HETSYN LINK REVDAT 4 29-JUL-20 5JKA 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 19-FEB-20 5JKA 1 JRNL REMARK REVDAT 2 29-JUN-16 5JKA 1 JRNL REVDAT 1 22-JUN-16 5JKA 0 JRNL AUTH U.OHTO,H.ISHIDA,E.KRAYUKHINA,S.UCHIYAMA,N.INOUE,T.SHIMIZU JRNL TITL STRUCTURE OF IZUMO1-JUNO REVEALS SPERM-OOCYTE RECOGNITION JRNL TITL 2 DURING MAMMALIAN FERTILIZATION JRNL REF NATURE V. 534 566 2016 JRNL REFN ESSN 1476-4687 JRNL PMID 27309808 JRNL DOI 10.1038/NATURE18596 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0103 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 32072 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1674 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2125 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.66 REMARK 3 BIN R VALUE (WORKING SET) : 0.2840 REMARK 3 BIN FREE R VALUE SET COUNT : 118 REMARK 3 BIN FREE R VALUE : 0.2720 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3236 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 53 REMARK 3 SOLVENT ATOMS : 149 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.65000 REMARK 3 B22 (A**2) : -0.92000 REMARK 3 B33 (A**2) : -2.72000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.175 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.146 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.118 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.581 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3418 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3005 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4662 ; 1.476 ; 1.942 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6969 ; 1.010 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 395 ; 6.238 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 167 ;34.419 ;23.832 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 527 ;16.121 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;16.724 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 464 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3824 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 834 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1592 ; 2.366 ; 3.036 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1591 ; 2.364 ; 3.033 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1983 ; 3.535 ; 4.530 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1984 ; 3.534 ; 4.533 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1826 ; 2.857 ; 3.392 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1827 ; 2.857 ; 3.394 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2680 ; 4.393 ; 4.953 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 14415 ; 6.942 ;29.210 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 14416 ; 6.941 ;29.213 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 19 A 231 REMARK 3 ORIGIN FOR THE GROUP (A): -10.8802 4.6076 -44.9665 REMARK 3 T TENSOR REMARK 3 T11: 0.0511 T22: 0.0657 REMARK 3 T33: 0.1285 T12: 0.0146 REMARK 3 T13: 0.0156 T23: -0.0006 REMARK 3 L TENSOR REMARK 3 L11: 0.1466 L22: 0.5990 REMARK 3 L33: 1.3115 L12: -0.1967 REMARK 3 L13: -0.1086 L23: -0.1340 REMARK 3 S TENSOR REMARK 3 S11: -0.0160 S12: -0.0656 S13: -0.0161 REMARK 3 S21: -0.0631 S22: 0.0365 S23: -0.0123 REMARK 3 S31: -0.0149 S32: -0.0456 S33: -0.0205 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 20 B 231 REMARK 3 ORIGIN FOR THE GROUP (A): -6.9097 -2.2306 -13.3699 REMARK 3 T TENSOR REMARK 3 T11: 0.1485 T22: 0.2716 REMARK 3 T33: 0.0299 T12: 0.1042 REMARK 3 T13: 0.0083 T23: -0.0573 REMARK 3 L TENSOR REMARK 3 L11: 0.6661 L22: 0.8440 REMARK 3 L33: 0.8889 L12: -0.6347 REMARK 3 L13: 0.3139 L23: -0.5589 REMARK 3 S TENSOR REMARK 3 S11: -0.2615 S12: -0.2910 S13: 0.0094 REMARK 3 S21: 0.1804 S22: 0.3620 S23: -0.0222 REMARK 3 S31: -0.1250 S32: -0.0923 S33: -0.1005 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5JKA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-APR-16. REMARK 100 THE DEPOSITION ID IS D_1000220775. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-FEB-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NE3A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33749 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 12.30 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 26.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4KMY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% (W/V) PEG3350, 0.24 M MALONATE PH REMARK 280 7.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y,-Z REMARK 290 8555 X,-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.96000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 117.54200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.51900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 117.54200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.96000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.51900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 25.96000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 40.51900 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 117.54200 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 40.51900 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 25.96000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 117.54200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG B 16 REMARK 465 SER B 17 REMARK 465 PRO B 18 REMARK 465 TRP B 19 REMARK 465 VAL B 110 REMARK 465 GLY B 111 REMARK 465 SER B 112 REMARK 465 LEU B 113 REMARK 465 GLY B 114 REMARK 465 TRP B 115 REMARK 465 GLU B 116 REMARK 465 VAL B 117 REMARK 465 ALA B 118 REMARK 465 PRO B 119 REMARK 465 SER B 120 REMARK 465 GLY B 121 REMARK 465 GLN B 122 REMARK 465 GLU B 232 REMARK 465 VAL B 233 REMARK 465 LEU B 234 REMARK 465 PHE B 235 REMARK 465 GLN B 236 REMARK 465 ARG A 16 REMARK 465 SER A 17 REMARK 465 PRO A 18 REMARK 465 VAL A 110 REMARK 465 GLY A 111 REMARK 465 SER A 112 REMARK 465 LEU A 113 REMARK 465 GLY A 114 REMARK 465 TRP A 115 REMARK 465 GLU A 116 REMARK 465 VAL A 117 REMARK 465 ALA A 118 REMARK 465 PRO A 119 REMARK 465 SER A 120 REMARK 465 GLY A 121 REMARK 465 GLN A 122 REMARK 465 GLU A 232 REMARK 465 VAL A 233 REMARK 465 LEU A 234 REMARK 465 PHE A 235 REMARK 465 GLN A 236 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE1 TRP A 19 OE1 GLU A 229 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 87 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU B 45 -104.73 38.64 REMARK 500 ASN B 53 102.43 -166.19 REMARK 500 GLU A 45 -113.44 38.63 REMARK 500 ASN A 53 97.94 -164.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5JKE RELATED DB: PDB REMARK 900 RELATED ID: 5JKD RELATED DB: PDB REMARK 900 RELATED ID: 5JKC RELATED DB: PDB REMARK 900 RELATED ID: 5JKB RELATED DB: PDB REMARK 900 RELATED ID: 5JK9 RELATED DB: PDB DBREF 5JKA B 20 228 UNP A6ND01 JUNO_HUMAN 20 228 DBREF 5JKA A 20 228 UNP A6ND01 JUNO_HUMAN 20 228 SEQADV 5JKA ARG B 16 UNP A6ND01 EXPRESSION TAG SEQADV 5JKA SER B 17 UNP A6ND01 EXPRESSION TAG SEQADV 5JKA PRO B 18 UNP A6ND01 EXPRESSION TAG SEQADV 5JKA TRP B 19 UNP A6ND01 EXPRESSION TAG SEQADV 5JKA GLU B 229 UNP A6ND01 EXPRESSION TAG SEQADV 5JKA PHE B 230 UNP A6ND01 EXPRESSION TAG SEQADV 5JKA LEU B 231 UNP A6ND01 EXPRESSION TAG SEQADV 5JKA GLU B 232 UNP A6ND01 EXPRESSION TAG SEQADV 5JKA VAL B 233 UNP A6ND01 EXPRESSION TAG SEQADV 5JKA LEU B 234 UNP A6ND01 EXPRESSION TAG SEQADV 5JKA PHE B 235 UNP A6ND01 EXPRESSION TAG SEQADV 5JKA GLN B 236 UNP A6ND01 EXPRESSION TAG SEQADV 5JKA ARG A 16 UNP A6ND01 EXPRESSION TAG SEQADV 5JKA SER A 17 UNP A6ND01 EXPRESSION TAG SEQADV 5JKA PRO A 18 UNP A6ND01 EXPRESSION TAG SEQADV 5JKA TRP A 19 UNP A6ND01 EXPRESSION TAG SEQADV 5JKA GLU A 229 UNP A6ND01 EXPRESSION TAG SEQADV 5JKA PHE A 230 UNP A6ND01 EXPRESSION TAG SEQADV 5JKA LEU A 231 UNP A6ND01 EXPRESSION TAG SEQADV 5JKA GLU A 232 UNP A6ND01 EXPRESSION TAG SEQADV 5JKA VAL A 233 UNP A6ND01 EXPRESSION TAG SEQADV 5JKA LEU A 234 UNP A6ND01 EXPRESSION TAG SEQADV 5JKA PHE A 235 UNP A6ND01 EXPRESSION TAG SEQADV 5JKA GLN A 236 UNP A6ND01 EXPRESSION TAG SEQRES 1 B 221 ARG SER PRO TRP GLY ASP GLU LEU LEU ASN ILE CYS MET SEQRES 2 B 221 ASN ALA LYS HIS HIS LYS ARG VAL PRO SER PRO GLU ASP SEQRES 3 B 221 LYS LEU TYR GLU GLU CYS ILE PRO TRP LYS ASP ASN ALA SEQRES 4 B 221 CYS CYS THR LEU THR THR SER TRP GLU ALA HIS LEU ASP SEQRES 5 B 221 VAL SER PRO LEU TYR ASN PHE SER LEU PHE HIS CYS GLY SEQRES 6 B 221 LEU LEU MET PRO GLY CYS ARG LYS HIS PHE ILE GLN ALA SEQRES 7 B 221 ILE CYS PHE TYR GLU CYS SER PRO ASN LEU GLY PRO TRP SEQRES 8 B 221 ILE GLN PRO VAL GLY SER LEU GLY TRP GLU VAL ALA PRO SEQRES 9 B 221 SER GLY GLN GLY GLU ARG VAL VAL ASN VAL PRO LEU CYS SEQRES 10 B 221 GLN GLU ASP CYS GLU GLU TRP TRP GLU ASP CYS ARG MET SEQRES 11 B 221 SER TYR THR CYS LYS SER ASN TRP ARG GLY GLY TRP ASP SEQRES 12 B 221 TRP SER GLN GLY LYS ASN ARG CYS PRO LYS GLY ALA GLN SEQRES 13 B 221 CYS LEU PRO PHE SER HIS TYR PHE PRO THR PRO ALA ASP SEQRES 14 B 221 LEU CYS GLU LYS THR TRP SER ASN SER PHE LYS ALA SER SEQRES 15 B 221 PRO GLU ARG ARG ASN SER GLY ARG CYS LEU GLN LYS TRP SEQRES 16 B 221 PHE GLU PRO ALA GLN GLY ASN PRO ASN VAL ALA VAL ALA SEQRES 17 B 221 ARG LEU PHE ALA SER GLU PHE LEU GLU VAL LEU PHE GLN SEQRES 1 A 221 ARG SER PRO TRP GLY ASP GLU LEU LEU ASN ILE CYS MET SEQRES 2 A 221 ASN ALA LYS HIS HIS LYS ARG VAL PRO SER PRO GLU ASP SEQRES 3 A 221 LYS LEU TYR GLU GLU CYS ILE PRO TRP LYS ASP ASN ALA SEQRES 4 A 221 CYS CYS THR LEU THR THR SER TRP GLU ALA HIS LEU ASP SEQRES 5 A 221 VAL SER PRO LEU TYR ASN PHE SER LEU PHE HIS CYS GLY SEQRES 6 A 221 LEU LEU MET PRO GLY CYS ARG LYS HIS PHE ILE GLN ALA SEQRES 7 A 221 ILE CYS PHE TYR GLU CYS SER PRO ASN LEU GLY PRO TRP SEQRES 8 A 221 ILE GLN PRO VAL GLY SER LEU GLY TRP GLU VAL ALA PRO SEQRES 9 A 221 SER GLY GLN GLY GLU ARG VAL VAL ASN VAL PRO LEU CYS SEQRES 10 A 221 GLN GLU ASP CYS GLU GLU TRP TRP GLU ASP CYS ARG MET SEQRES 11 A 221 SER TYR THR CYS LYS SER ASN TRP ARG GLY GLY TRP ASP SEQRES 12 A 221 TRP SER GLN GLY LYS ASN ARG CYS PRO LYS GLY ALA GLN SEQRES 13 A 221 CYS LEU PRO PHE SER HIS TYR PHE PRO THR PRO ALA ASP SEQRES 14 A 221 LEU CYS GLU LYS THR TRP SER ASN SER PHE LYS ALA SER SEQRES 15 A 221 PRO GLU ARG ARG ASN SER GLY ARG CYS LEU GLN LYS TRP SEQRES 16 A 221 PHE GLU PRO ALA GLN GLY ASN PRO ASN VAL ALA VAL ALA SEQRES 17 A 221 ARG LEU PHE ALA SER GLU PHE LEU GLU VAL LEU PHE GLN HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET MAN C 4 11 HET CL B 305 1 HET CL A 301 1 HET CL A 302 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM CL CHLORIDE ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 3 NAG 2(C8 H15 N O6) FORMUL 3 BMA C6 H12 O6 FORMUL 3 MAN C6 H12 O6 FORMUL 4 CL 3(CL 1-) FORMUL 7 HOH *149(H2 O) HELIX 1 AA1 GLY B 20 LEU B 24 5 5 HELIX 2 AA2 TYR B 44 LYS B 51 5 8 HELIX 3 AA3 THR B 57 ALA B 64 1 8 HELIX 4 AA4 MET B 83 SER B 100 1 18 HELIX 5 AA5 LEU B 103 PRO B 105 5 3 HELIX 6 AA6 CYS B 132 ARG B 144 1 13 HELIX 7 AA7 PHE B 175 PHE B 179 1 5 HELIX 8 AA8 THR B 181 THR B 189 1 9 HELIX 9 AA9 GLU B 212 GLY B 216 5 5 HELIX 10 AB1 PRO B 218 GLU B 229 1 12 HELIX 11 AB2 TRP A 19 LEU A 24 5 6 HELIX 12 AB3 TYR A 44 LYS A 51 5 8 HELIX 13 AB4 THR A 57 ALA A 64 1 8 HELIX 14 AB5 MET A 83 SER A 100 1 18 HELIX 15 AB6 LEU A 103 PRO A 105 5 3 HELIX 16 AB7 CYS A 132 ARG A 144 1 13 HELIX 17 AB8 PHE A 175 PHE A 179 1 5 HELIX 18 AB9 THR A 181 THR A 189 1 9 HELIX 19 AC1 GLU A 212 GLY A 216 5 5 HELIX 20 AC2 ASN A 219 GLU A 229 1 11 SHEET 1 AA1 2 ILE B 107 GLN B 108 0 SHEET 2 AA1 2 ARG B 125 VAL B 126 -1 O ARG B 125 N GLN B 108 SHEET 1 AA2 2 VAL B 129 LEU B 131 0 SHEET 2 AA2 2 PHE B 194 ALA B 196 1 O LYS B 195 N VAL B 129 SHEET 1 AA3 2 TYR B 147 THR B 148 0 SHEET 2 AA3 2 LEU B 173 PRO B 174 -1 O LEU B 173 N THR B 148 SHEET 1 AA4 2 ILE A 107 GLN A 108 0 SHEET 2 AA4 2 ARG A 125 VAL A 126 -1 O ARG A 125 N GLN A 108 SHEET 1 AA5 2 VAL A 129 LEU A 131 0 SHEET 2 AA5 2 PHE A 194 ALA A 196 1 O LYS A 195 N LEU A 131 SHEET 1 AA6 2 TYR A 147 THR A 148 0 SHEET 2 AA6 2 LEU A 173 PRO A 174 -1 O LEU A 173 N THR A 148 SSBOND 1 CYS B 27 CYS B 55 1555 1555 2.05 SSBOND 2 CYS B 47 CYS B 95 1555 1555 2.05 SSBOND 3 CYS B 56 CYS B 99 1555 1555 2.04 SSBOND 4 CYS B 79 CYS B 172 1555 1555 2.08 SSBOND 5 CYS B 86 CYS B 143 1555 1555 2.06 SSBOND 6 CYS B 132 CYS B 206 1555 1555 2.06 SSBOND 7 CYS B 136 CYS B 186 1555 1555 2.03 SSBOND 8 CYS B 149 CYS B 166 1555 1555 2.08 SSBOND 9 CYS A 27 CYS A 55 1555 1555 2.08 SSBOND 10 CYS A 47 CYS A 95 1555 1555 2.05 SSBOND 11 CYS A 56 CYS A 99 1555 1555 2.06 SSBOND 12 CYS A 79 CYS A 172 1555 1555 2.07 SSBOND 13 CYS A 86 CYS A 143 1555 1555 2.07 SSBOND 14 CYS A 132 CYS A 206 1555 1555 2.08 SSBOND 15 CYS A 136 CYS A 186 1555 1555 2.07 SSBOND 16 CYS A 149 CYS A 166 1555 1555 2.11 LINK ND2 ASN B 73 C1 NAG C 1 1555 1555 1.42 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.42 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.42 LINK O3 BMA C 3 C1 MAN C 4 1555 1555 1.43 CRYST1 51.920 81.038 235.084 90.00 90.00 90.00 I 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019260 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012340 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004254 0.00000