PDB Short entry for 5JNT HEADER HYDROLASE 30-APR-16 5JNT TITLE CRYSTAL STRUCTURE OF HUMAN LOW MOLECULAR WEIGHT PROTEIN TYROSINE TITLE 2 PHOSPHATASE (LMPTP) TYPE A COMPLEXED WITH MES COMPND MOL_ID: 1; COMPND 2 MOLECULE: LOW MOLECULAR WEIGHT PHOSPHOTYROSINE PROTEIN PHOSPHATASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: LMW-PTPASE,ADIPOCYTE ACID PHOSPHATASE,LOW MOLECULAR WEIGHT COMPND 5 CYTOSOLIC ACID PHOSPHATASE,RED CELL ACID PHOSPHATASE 1; COMPND 6 EC: 3.1.3.48; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ACP1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-4T KEYWDS PROTEIN TYROSINE PHOSPHATASE, HYDROLASE, LMW-PTP, LMPTP EXPDTA X-RAY DIFFRACTION AUTHOR S.M.STANFORD,A.E.ALESHIN,R.C.LIDDINGTON,L.BANKSTON,G.CADWELL, AUTHOR 2 N.BOTTINI REVDAT 6 27-SEP-23 5JNT 1 REMARK REVDAT 5 25-DEC-19 5JNT 1 REMARK REVDAT 4 20-SEP-17 5JNT 1 REMARK REVDAT 3 24-MAY-17 5JNT 1 JRNL REVDAT 2 12-APR-17 5JNT 1 JRNL REVDAT 1 29-MAR-17 5JNT 0 JRNL AUTH S.M.STANFORD,A.E.ALESHIN,V.ZHANG,R.J.ARDECKY,M.P.HEDRICK, JRNL AUTH 2 J.ZOU,S.R.GANJI,M.R.BLISS,F.YAMAMOTO,A.A.BOBKOV,J.KISELAR, JRNL AUTH 3 Y.LIU,G.W.CADWELL,S.KHARE,J.YU,A.BARQUILLA,T.D.Y.CHUNG, JRNL AUTH 4 T.MUSTELIN,S.SCHENK,L.A.BANKSTON,R.C.LIDDINGTON, JRNL AUTH 5 A.B.PINKERTON,N.BOTTINI JRNL TITL DIABETES REVERSAL BY INHIBITION OF THE LOW-MOLECULAR-WEIGHT JRNL TITL 2 TYROSINE PHOSPHATASE. JRNL REF NAT. CHEM. BIOL. V. 13 624 2017 JRNL REFN ESSN 1552-4469 JRNL PMID 28346406 JRNL DOI 10.1038/NCHEMBIO.2344 REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 31159 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.136 REMARK 3 R VALUE (WORKING SET) : 0.135 REMARK 3 FREE R VALUE : 0.166 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1610 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1232 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 275 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.07000 REMARK 3 B22 (A**2) : 0.03000 REMARK 3 B33 (A**2) : 0.04000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.050 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.055 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.029 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.444 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 5JNT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1000220933. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-AUG-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 12.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0781 REMARK 200 MONOCHROMATOR : MIRROWS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.1 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38952 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.360 REMARK 200 RESOLUTION RANGE LOW (A) : 33.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.03900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 25.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.36 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 72.7 REMARK 200 DATA REDUNDANCY IN SHELL : 1.60 REMARK 200 R MERGE FOR SHELL (I) : 0.22700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5JNR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 200 MM NACL, 40 MM MES, REMARK 280 PH 6.5, EVAPORATION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 16.95250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.21150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.50900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 48.21150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 16.95250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 27.50900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 MET A 0 REMARK 465 ALA A 1 REMARK 465 GLU A 2 REMARK 465 GLN A 3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 371 O HOH A 427 4555 2.12 REMARK 500 O HOH A 441 O HOH A 491 1655 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 50 CD GLU A 50 OE2 0.088 REMARK 500 TYR A 57 CG TYR A 57 CD1 -0.091 REMARK 500 TYR A 57 CE1 TYR A 57 CZ -0.143 REMARK 500 TYR A 57 CZ TYR A 57 OH 0.144 REMARK 500 GLN A 60 CD GLN A 60 NE2 0.198 REMARK 500 TYR A 87 CE1 TYR A 87 CZ -0.085 REMARK 500 TYR A 87 CE2 TYR A 87 CD2 0.117 REMARK 500 GLU A 93 CD GLU A 93 OE2 0.070 REMARK 500 ARG A 101 NE ARG A 101 CZ -0.134 REMARK 500 LYS A 102 CD LYS A 102 CE 0.170 REMARK 500 GLU A 114 CD GLU A 114 OE1 -0.093 REMARK 500 GLU A 139 CD GLU A 139 OE2 0.072 REMARK 500 TYR A 142 CE1 TYR A 142 CZ -0.079 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 27 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 ASP A 32 OD1 - CG - OD2 ANGL. DEV. = 13.1 DEGREES REMARK 500 ASP A 32 CB - CG - OD2 ANGL. DEV. = -9.8 DEGREES REMARK 500 ARG A 40 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 TYR A 57 CB - CG - CD1 ANGL. DEV. = 4.0 DEGREES REMARK 500 TYR A 57 CG - CD1 - CE1 ANGL. DEV. = 9.2 DEGREES REMARK 500 TYR A 57 CG - CD2 - CE2 ANGL. DEV. = -6.5 DEGREES REMARK 500 TYR A 57 CD1 - CE1 - CZ ANGL. DEV. = -6.9 DEGREES REMARK 500 ARG A 58 NE - CZ - NH2 ANGL. DEV. = -4.7 DEGREES REMARK 500 ARG A 65 NE - CZ - NH1 ANGL. DEV. = 7.0 DEGREES REMARK 500 ARG A 75 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 ARG A 75 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 TYR A 87 CB - CG - CD2 ANGL. DEV. = -4.1 DEGREES REMARK 500 TYR A 87 CD1 - CG - CD2 ANGL. DEV. = 8.6 DEGREES REMARK 500 TYR A 87 CB - CG - CD1 ANGL. DEV. = -4.5 DEGREES REMARK 500 TYR A 87 CG - CD2 - CE2 ANGL. DEV. = -7.1 DEGREES REMARK 500 TYR A 87 CD1 - CE1 - CZ ANGL. DEV. = -8.8 DEGREES REMARK 500 TYR A 87 CE1 - CZ - OH ANGL. DEV. = -17.9 DEGREES REMARK 500 TYR A 87 CE1 - CZ - CE2 ANGL. DEV. = 13.2 DEGREES REMARK 500 TYR A 87 CZ - CE2 - CD2 ANGL. DEV. = -6.8 DEGREES REMARK 500 ASP A 98 CB - CG - OD2 ANGL. DEV. = -9.5 DEGREES REMARK 500 ARG A 101 CD - NE - CZ ANGL. DEV. = 9.5 DEGREES REMARK 500 TYR A 119 CB - CG - CD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP A 129 CB - CG - OD1 ANGL. DEV. = 8.1 DEGREES REMARK 500 ASP A 135 CB - CG - OD1 ANGL. DEV. = 9.2 DEGREES REMARK 500 ASP A 135 CB - CG - OD2 ANGL. DEV. = -7.2 DEGREES REMARK 500 ARG A 150 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG A 150 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 150 NE - CZ - NH2 ANGL. DEV. = -7.0 DEGREES REMARK 500 ARG A 150 NE - CZ - NH2 ANGL. DEV. = -8.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 155 101.05 -163.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ASP A 98 0.11 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 574 DISTANCE = 6.25 ANGSTROMS REMARK 525 HOH A 575 DISTANCE = 6.38 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MES A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 204 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5JNR RELATED DB: PDB REMARK 900 RELATED ID: 5JNS RELATED DB: PDB REMARK 900 RELATED ID: 5JNU RELATED DB: PDB REMARK 900 RELATED ID: 5JNV RELATED DB: PDB REMARK 900 RELATED ID: 5JNW RELATED DB: PDB DBREF 5JNT A 0 157 UNP P24666 PPAC_HUMAN 1 158 SEQADV 5JNT GLY A -2 UNP P24666 EXPRESSION TAG SEQADV 5JNT SER A -1 UNP P24666 EXPRESSION TAG SEQADV 5JNT VAL A 4 UNP P24666 ALA 5 CONFLICT SEQRES 1 A 160 GLY SER MET ALA GLU GLN VAL THR LYS SER VAL LEU PHE SEQRES 2 A 160 VAL CYS LEU GLY ASN ILE CYS ARG SER PRO ILE ALA GLU SEQRES 3 A 160 ALA VAL PHE ARG LYS LEU VAL THR ASP GLN ASN ILE SER SEQRES 4 A 160 GLU ASN TRP ARG VAL ASP SER ALA ALA THR SER GLY TYR SEQRES 5 A 160 GLU ILE GLY ASN PRO PRO ASP TYR ARG GLY GLN SER CYS SEQRES 6 A 160 MET LYS ARG HIS GLY ILE PRO MET SER HIS VAL ALA ARG SEQRES 7 A 160 GLN ILE THR LYS GLU ASP PHE ALA THR PHE ASP TYR ILE SEQRES 8 A 160 LEU CYS MET ASP GLU SER ASN LEU ARG ASP LEU ASN ARG SEQRES 9 A 160 LYS SER ASN GLN VAL LYS THR CYS LYS ALA LYS ILE GLU SEQRES 10 A 160 LEU LEU GLY SER TYR ASP PRO GLN LYS GLN LEU ILE ILE SEQRES 11 A 160 GLU ASP PRO TYR TYR GLY ASN ASP SER ASP PHE GLU THR SEQRES 12 A 160 VAL TYR GLN GLN CYS VAL ARG CYS CYS ARG ALA PHE LEU SEQRES 13 A 160 GLU LYS ALA HIS HET MES A 201 12 HET DMS A 202 4 HET EDO A 203 4 HET EDO A 204 4 HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETNAM DMS DIMETHYL SULFOXIDE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 MES C6 H13 N O4 S FORMUL 3 DMS C2 H6 O S FORMUL 4 EDO 2(C2 H6 O2) FORMUL 6 HOH *275(H2 O) HELIX 1 AA1 ARG A 18 GLN A 33 1 16 HELIX 2 AA2 ILE A 35 GLU A 37 5 3 HELIX 3 AA3 ASP A 56 HIS A 66 1 11 HELIX 4 AA4 THR A 78 PHE A 85 1 8 HELIX 5 AA5 ASP A 92 ASN A 104 1 13 HELIX 6 AA6 GLY A 117 ASP A 120 5 4 HELIX 7 AA7 ASN A 134 LYS A 155 1 22 SHEET 1 AA1 4 TRP A 39 ALA A 45 0 SHEET 2 AA1 4 LYS A 6 CYS A 12 1 N LYS A 6 O ARG A 40 SHEET 3 AA1 4 TYR A 87 CYS A 90 1 O TYR A 87 N LEU A 9 SHEET 4 AA1 4 LYS A 112 LEU A 115 1 O LYS A 112 N ILE A 88 SITE 1 AC1 12 CYS A 12 LEU A 13 GLY A 14 ASN A 15 SITE 2 AC1 12 ILE A 16 CYS A 17 ARG A 18 GLU A 50 SITE 3 AC1 12 ARG A 97 ASP A 129 TYR A 131 HOH A 355 SITE 1 AC2 7 TYR A 49 ILE A 51 ASN A 53 ASP A 92 SITE 2 AC2 7 SER A 94 HOH A 396 HOH A 418 SITE 1 AC3 5 PRO A 121 GLN A 122 ARG A 147 ARG A 150 SITE 2 AC3 5 HOH A 397 SITE 1 AC4 5 PRO A 69 HOH A 305 HOH A 316 HOH A 464 SITE 2 AC4 5 HOH A 495 CRYST1 33.905 55.018 96.423 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.029494 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018176 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010371 0.00000