PDB Short entry for 5JQ1 HEADER SUGAR BINDING PROTEIN 04-MAY-16 5JQ1 TITLE EFFICIENT TARGETING OF THE ASIALOGLYCOPROTEIN RECEPTOR BY POLYVALENT TITLE 2 DISPLAY OF A COMPACT GALACTOSAMINE MIMIC COMPND MOL_ID: 1; COMPND 2 MOLECULE: ASIALOGLYCOPROTEIN RECEPTOR 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ASGPR 1,C-TYPE LECTIN DOMAIN FAMILY 4 MEMBER H1,HEPATIC COMPND 5 LECTIN H1,HL-1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ASGR1, CLEC4H1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI-PICHIA PASTORIS SHUTTLE VECTOR SOURCE 7 PPPARG4; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 1182032 KEYWDS ASIALOGLYCOPROTEIN RECEPTOR, CARBOHYDRATES, LIVER TARGETING, SUGAR KEYWDS 2 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.LIU REVDAT 2 27-SEP-23 5JQ1 1 SSBOND LINK REVDAT 1 14-JUN-17 5JQ1 0 JRNL AUTH C.A.SANHUEZA,M.M.BAKSH,B.THUMA,M.D.ROY,S.DUTTA,C.PREVILLE, JRNL AUTH 2 B.A.CHRUNYK,K.BEAUMONT,R.DULLEA,M.AMMIRATI,S.LIU,D.GEBHARD, JRNL AUTH 3 J.E.FINLEY,C.T.SALATTO,A.KING-AHMAD,I.STOCK,K.ATKINSON, JRNL AUTH 4 B.REIDICH,W.LIN,R.KUMAR,M.TU,E.MENHAJI-KLOTZ,D.A.PRICE, JRNL AUTH 5 S.LIRAS,M.G.FINN,V.MASCITTI JRNL TITL EFFICIENT LIVER TARGETING BY POLYVALENT DISPLAY OF A COMPACT JRNL TITL 2 LIGAND FOR THE ASIALOGLYCOPROTEIN RECEPTOR. JRNL REF J. AM. CHEM. SOC. V. 139 3528 2017 JRNL REFN ESSN 1520-5126 JRNL PMID 28230359 JRNL DOI 10.1021/JACS.6B12964 REMARK 2 REMARK 2 RESOLUTION. 1.83 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.7 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.83 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.37 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 29063 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 1480 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.000 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 15 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.83 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.89 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.27 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2866 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2070 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2709 REMARK 3 BIN R VALUE (WORKING SET) : 0.2050 REMARK 3 BIN FREE R VALUE : 0.2450 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.48 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 157 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2161 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 39 REMARK 3 SOLVENT ATOMS : 146 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.39 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.45 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.89300 REMARK 3 B22 (A**2) : -7.35410 REMARK 3 B33 (A**2) : 2.46120 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.26890 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.240 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.119 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.115 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.118 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.115 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2320 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 3208 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 750 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 70 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 331 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2320 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 1 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 260 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 2646 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 0.90 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.85 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 17.48 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 1.7810 0.4727 25.6175 REMARK 3 T TENSOR REMARK 3 T11: -0.0258 T22: -0.0627 REMARK 3 T33: -0.0422 T12: -0.0007 REMARK 3 T13: 0.0128 T23: 0.0100 REMARK 3 L TENSOR REMARK 3 L11: 1.8168 L22: 0.5096 REMARK 3 L33: 2.4464 L12: 0.2211 REMARK 3 L13: 0.0724 L23: -0.0261 REMARK 3 S TENSOR REMARK 3 S11: -0.0179 S12: 0.1419 S13: -0.0558 REMARK 3 S21: -0.0686 S22: 0.0276 S23: 0.0043 REMARK 3 S31: 0.1751 S32: -0.0843 S33: -0.0097 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): -16.5639 -0.5874 50.9897 REMARK 3 T TENSOR REMARK 3 T11: -0.0561 T22: -0.0096 REMARK 3 T33: -0.0575 T12: 0.0157 REMARK 3 T13: 0.0242 T23: -0.0154 REMARK 3 L TENSOR REMARK 3 L11: 1.6680 L22: 1.0323 REMARK 3 L33: 2.5322 L12: -0.2835 REMARK 3 L13: 0.8252 L23: -0.4749 REMARK 3 S TENSOR REMARK 3 S11: -0.0585 S12: -0.2296 S13: 0.1727 REMARK 3 S21: 0.1081 S22: 0.0116 S23: 0.0322 REMARK 3 S31: -0.1030 S32: -0.0597 S33: 0.0470 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5JQ1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1000221030. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-NOV-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29063 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.830 REMARK 200 RESOLUTION RANGE LOW (A) : 34.370 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.09100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.83 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.49000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1DV8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M CACODYLATE, PH 6.8-7.4, 0.1-0.2M REMARK 280 (NH4)2SO4, 14-20% PEG 8000, PH 7.0, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 29.74500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -82.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 146 REMARK 465 GLY A 147 REMARK 465 SER A 148 REMARK 465 GLU A 149 REMARK 465 ARG A 150 REMARK 465 ASP A 281 REMARK 465 LYS A 282 REMARK 465 ALA A 283 REMARK 465 SER A 284 REMARK 465 GLN A 285 REMARK 465 GLU A 286 REMARK 465 PRO A 287 REMARK 465 PRO A 288 REMARK 465 LEU A 289 REMARK 465 LEU A 290 REMARK 465 MET B 146 REMARK 465 GLY B 147 REMARK 465 SER B 148 REMARK 465 GLU B 149 REMARK 465 ARG B 150 REMARK 465 THR B 151 REMARK 465 ASP B 281 REMARK 465 LYS B 282 REMARK 465 ALA B 283 REMARK 465 SER B 284 REMARK 465 GLN B 285 REMARK 465 GLU B 286 REMARK 465 PRO B 287 REMARK 465 PRO B 288 REMARK 465 LEU B 289 REMARK 465 LEU B 290 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CA CA B 1002 H14 ZPF B 1003 1.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 234 52.67 -148.41 REMARK 500 ASN B 234 50.07 -144.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1003 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL A 190 O REMARK 620 2 GLU A 196 OE1 84.6 REMARK 620 3 GLU A 196 OE2 74.3 48.0 REMARK 620 4 GLU A 277 OE1 79.0 91.1 132.2 REMARK 620 5 GLU A 277 OE2 127.8 82.3 126.1 51.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1001 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 215 OD1 REMARK 620 2 ASP A 215 OD2 50.3 REMARK 620 3 ASP A 242 OD1 161.4 146.8 REMARK 620 4 GLU A 252 O 92.5 129.1 77.9 REMARK 620 5 ASP A 253 OD1 76.5 118.1 85.5 73.4 REMARK 620 6 HOH A1125 O 100.9 82.0 91.2 71.6 144.8 REMARK 620 7 HOH A1133 O 115.9 66.0 80.8 138.8 139.2 74.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1002 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 239 OE1 REMARK 620 2 ASP A 241 OD1 72.7 REMARK 620 3 GLU A 252 OE2 146.9 74.5 REMARK 620 4 ASN A 264 OD1 70.3 143.0 142.5 REMARK 620 5 ASP A 265 O 133.3 134.9 70.7 75.9 REMARK 620 6 ASP A 265 OD1 76.6 82.2 94.7 91.5 73.0 REMARK 620 7 ZPF A1004 O6 127.3 124.1 76.1 78.6 73.8 146.7 REMARK 620 8 ZPF A1004 O5 77.4 73.3 97.6 96.1 138.5 148.5 64.7 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1004 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL B 190 O REMARK 620 2 GLU B 196 OE1 81.0 REMARK 620 3 GLU B 196 OE2 70.2 46.3 REMARK 620 4 GLU B 277 OE1 78.2 91.6 129.6 REMARK 620 5 GLU B 277 OE2 126.3 83.4 126.6 51.3 REMARK 620 6 HOH B1116 O 87.3 124.8 78.9 138.2 141.4 REMARK 620 7 HOH B1130 O 111.0 159.7 152.3 75.6 76.3 73.5 REMARK 620 8 HOH B1167 O 148.4 87.4 80.5 131.7 80.8 75.4 89.5 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1001 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 215 OD1 REMARK 620 2 ASP B 215 OD2 50.7 REMARK 620 3 ASP B 242 OD1 160.7 147.7 REMARK 620 4 GLU B 252 O 90.6 128.1 77.9 REMARK 620 5 ASP B 253 OD1 75.5 117.3 86.2 73.3 REMARK 620 6 HOH B1141 O 101.3 83.5 89.6 70.5 143.6 REMARK 620 7 HOH B1160 O 121.0 70.3 77.5 134.5 141.6 71.6 REMARK 620 8 HOH B1162 O 96.6 83.1 83.6 141.8 72.4 142.9 71.3 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1002 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN B 239 OE1 REMARK 620 2 ASP B 241 OD1 73.7 REMARK 620 3 GLU B 252 OE2 145.5 72.5 REMARK 620 4 ASN B 264 OD1 70.5 144.1 143.3 REMARK 620 5 ASP B 265 O 130.6 135.3 72.9 73.8 REMARK 620 6 ASP B 265 OD1 76.1 81.5 92.0 92.3 72.5 REMARK 620 7 ZPF B1003 O6 129.5 124.4 77.2 78.8 73.0 145.5 REMARK 620 8 ZPF B1003 O5 78.4 74.2 98.9 96.0 138.8 148.7 65.8 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZPF A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZPF B 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 1004 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5JPV RELATED DB: PDB REMARK 900 5JPC CONTAINS THE SAME PROTEIN IN COMPLEX WITH LACTOSE DBREF 5JQ1 A 147 290 UNP P07306 ASGR1_HUMAN 148 291 DBREF 5JQ1 B 147 290 UNP P07306 ASGR1_HUMAN 148 291 SEQADV 5JQ1 MET A 146 UNP P07306 EXPRESSION TAG SEQADV 5JQ1 MET B 146 UNP P07306 EXPRESSION TAG SEQRES 1 A 145 MET GLY SER GLU ARG THR CYS CYS PRO VAL ASN TRP VAL SEQRES 2 A 145 GLU HIS GLU ARG SER CYS TYR TRP PHE SER ARG SER GLY SEQRES 3 A 145 LYS ALA TRP ALA ASP ALA ASP ASN TYR CYS ARG LEU GLU SEQRES 4 A 145 ASP ALA HIS LEU VAL VAL VAL THR SER TRP GLU GLU GLN SEQRES 5 A 145 LYS PHE VAL GLN HIS HIS ILE GLY PRO VAL ASN THR TRP SEQRES 6 A 145 MET GLY LEU HIS ASP GLN ASN GLY PRO TRP LYS TRP VAL SEQRES 7 A 145 ASP GLY THR ASP TYR GLU THR GLY PHE LYS ASN TRP ARG SEQRES 8 A 145 PRO GLU GLN PRO ASP ASP TRP TYR GLY HIS GLY LEU GLY SEQRES 9 A 145 GLY GLY GLU ASP CYS ALA HIS PHE THR ASP ASP GLY ARG SEQRES 10 A 145 TRP ASN ASP ASP VAL CYS GLN ARG PRO TYR ARG TRP VAL SEQRES 11 A 145 CYS GLU THR GLU LEU ASP LYS ALA SER GLN GLU PRO PRO SEQRES 12 A 145 LEU LEU SEQRES 1 B 145 MET GLY SER GLU ARG THR CYS CYS PRO VAL ASN TRP VAL SEQRES 2 B 145 GLU HIS GLU ARG SER CYS TYR TRP PHE SER ARG SER GLY SEQRES 3 B 145 LYS ALA TRP ALA ASP ALA ASP ASN TYR CYS ARG LEU GLU SEQRES 4 B 145 ASP ALA HIS LEU VAL VAL VAL THR SER TRP GLU GLU GLN SEQRES 5 B 145 LYS PHE VAL GLN HIS HIS ILE GLY PRO VAL ASN THR TRP SEQRES 6 B 145 MET GLY LEU HIS ASP GLN ASN GLY PRO TRP LYS TRP VAL SEQRES 7 B 145 ASP GLY THR ASP TYR GLU THR GLY PHE LYS ASN TRP ARG SEQRES 8 B 145 PRO GLU GLN PRO ASP ASP TRP TYR GLY HIS GLY LEU GLY SEQRES 9 B 145 GLY GLY GLU ASP CYS ALA HIS PHE THR ASP ASP GLY ARG SEQRES 10 B 145 TRP ASN ASP ASP VAL CYS GLN ARG PRO TYR ARG TRP VAL SEQRES 11 B 145 CYS GLU THR GLU LEU ASP LYS ALA SER GLN GLU PRO PRO SEQRES 12 B 145 LEU LEU HET CA A1001 1 HET CA A1002 1 HET CA A1003 1 HET ZPF A1004 31 HET CL A1005 1 HET CA B1001 1 HET CA B1002 1 HET ZPF B1003 31 HET CA B1004 1 HETNAM CA CALCIUM ION HETNAM ZPF N-[(1S,2R,3R,4R,5S)-2,3-DIHYDROXY-1-(HYDROXYMETHYL)-6, HETNAM 2 ZPF 8-DIOXABICYCLO[3.2.1]OCTAN-4-YL]ACETAMIDE HETNAM CL CHLORIDE ION FORMUL 3 CA 6(CA 2+) FORMUL 6 ZPF 2(C9 H15 N O6) FORMUL 7 CL CL 1- FORMUL 12 HOH *146(H2 O) HELIX 1 AA1 ALA A 173 GLU A 184 1 12 HELIX 2 AA2 SER A 193 GLY A 205 1 13 HELIX 3 AA3 ALA B 173 GLU B 184 1 12 HELIX 4 AA4 SER B 193 GLY B 205 1 13 SHEET 1 AA1 5 VAL A 158 HIS A 160 0 SHEET 2 AA1 5 SER A 163 PHE A 167 -1 O TYR A 165 N VAL A 158 SHEET 3 AA1 5 ARG A 273 GLU A 279 -1 O THR A 278 N CYS A 164 SHEET 4 AA1 5 THR A 209 HIS A 214 1 N TRP A 210 O ARG A 273 SHEET 5 AA1 5 LYS A 221 TRP A 222 -1 O LYS A 221 N HIS A 214 SHEET 1 AA2 5 HIS A 187 LEU A 188 0 SHEET 2 AA2 5 ARG A 273 GLU A 279 -1 O GLU A 277 N HIS A 187 SHEET 3 AA2 5 THR A 209 HIS A 214 1 N TRP A 210 O ARG A 273 SHEET 4 AA2 5 CYS A 254 PHE A 257 -1 O PHE A 257 N THR A 209 SHEET 5 AA2 5 TRP A 263 ASP A 266 -1 O ASP A 266 N CYS A 254 SHEET 1 AA3 5 VAL B 158 HIS B 160 0 SHEET 2 AA3 5 SER B 163 PHE B 167 -1 O TYR B 165 N VAL B 158 SHEET 3 AA3 5 ARG B 273 GLU B 279 -1 O THR B 278 N CYS B 164 SHEET 4 AA3 5 THR B 209 HIS B 214 1 N TRP B 210 O ARG B 273 SHEET 5 AA3 5 LYS B 221 TRP B 222 -1 O LYS B 221 N HIS B 214 SHEET 1 AA4 5 HIS B 187 LEU B 188 0 SHEET 2 AA4 5 ARG B 273 GLU B 279 -1 O GLU B 277 N HIS B 187 SHEET 3 AA4 5 THR B 209 HIS B 214 1 N TRP B 210 O ARG B 273 SHEET 4 AA4 5 CYS B 254 PHE B 257 -1 O ALA B 255 N LEU B 213 SHEET 5 AA4 5 TRP B 263 ASP B 266 -1 O ASP B 266 N CYS B 254 SSBOND 1 CYS A 152 CYS B 152 1555 1554 2.04 SSBOND 2 CYS A 153 CYS A 164 1555 1555 2.03 SSBOND 3 CYS A 181 CYS A 276 1555 1555 2.07 SSBOND 4 CYS A 254 CYS A 268 1555 1555 2.04 SSBOND 5 CYS B 153 CYS B 164 1555 1555 2.04 SSBOND 6 CYS B 181 CYS B 276 1555 1555 2.07 SSBOND 7 CYS B 254 CYS B 268 1555 1555 2.02 LINK O VAL A 190 CA CA A1003 1555 1555 2.34 LINK OE1 GLU A 196 CA CA A1003 1555 1555 2.37 LINK OE2 GLU A 196 CA CA A1003 1555 1555 2.90 LINK OD1 ASP A 215 CA CA A1001 1555 1555 2.66 LINK OD2 ASP A 215 CA CA A1001 1555 1555 2.51 LINK OE1 GLN A 239 CA CA A1002 1555 1555 2.51 LINK OD1 ASP A 241 CA CA A1002 1555 1555 2.53 LINK OD1 ASP A 242 CA CA A1001 1555 1555 2.44 LINK O GLU A 252 CA CA A1001 1555 1555 2.48 LINK OE2 GLU A 252 CA CA A1002 1555 1555 2.43 LINK OD1 ASP A 253 CA CA A1001 1555 1555 2.56 LINK OD1 ASN A 264 CA CA A1002 1555 1555 2.49 LINK O ASP A 265 CA CA A1002 1555 1555 2.57 LINK OD1 ASP A 265 CA CA A1002 1555 1555 2.41 LINK OE1 GLU A 277 CA CA A1003 1555 1555 2.64 LINK OE2 GLU A 277 CA CA A1003 1555 1555 2.45 LINK CA CA A1001 O HOH A1125 1555 1555 2.42 LINK CA CA A1001 O HOH A1133 1555 1555 2.65 LINK CA CA A1002 O6 ZPF A1004 1555 1555 2.57 LINK CA CA A1002 O5 ZPF A1004 1555 1555 2.48 LINK O VAL B 190 CA CA B1004 1555 1555 2.42 LINK OE1 GLU B 196 CA CA B1004 1555 1555 2.22 LINK OE2 GLU B 196 CA CA B1004 1555 1555 3.03 LINK OD1 ASP B 215 CA CA B1001 1555 1555 2.58 LINK OD2 ASP B 215 CA CA B1001 1555 1555 2.50 LINK OE1 GLN B 239 CA CA B1002 1555 1555 2.58 LINK OD1 ASP B 241 CA CA B1002 1555 1555 2.52 LINK OD1 ASP B 242 CA CA B1001 1555 1555 2.46 LINK O GLU B 252 CA CA B1001 1555 1555 2.55 LINK OE2 GLU B 252 CA CA B1002 1555 1555 2.38 LINK OD1 ASP B 253 CA CA B1001 1555 1555 2.59 LINK OD1 ASN B 264 CA CA B1002 1555 1555 2.45 LINK O ASP B 265 CA CA B1002 1555 1555 2.51 LINK OD1 ASP B 265 CA CA B1002 1555 1555 2.42 LINK OE1 GLU B 277 CA CA B1004 1555 1555 2.71 LINK OE2 GLU B 277 CA CA B1004 1555 1555 2.29 LINK CA CA B1001 O HOH B1141 1555 1555 2.38 LINK CA CA B1001 O HOH B1160 1555 1555 2.61 LINK CA CA B1001 O HOH B1162 1555 1555 2.49 LINK CA CA B1002 O6 ZPF B1003 1555 1555 2.53 LINK CA CA B1002 O5 ZPF B1003 1555 1555 2.50 LINK CA CA B1004 O HOH B1116 1555 1555 2.52 LINK CA CA B1004 O HOH B1130 1555 1555 2.13 LINK CA CA B1004 O HOH B1167 1555 1555 2.41 CISPEP 1 GLN A 239 PRO A 240 0 -7.59 CISPEP 2 GLN B 239 PRO B 240 0 -3.57 SITE 1 AC1 6 ASP A 215 ASP A 242 GLU A 252 ASP A 253 SITE 2 AC1 6 HOH A1125 HOH A1133 SITE 1 AC2 6 GLN A 239 ASP A 241 GLU A 252 ASN A 264 SITE 2 AC2 6 ASP A 265 ZPF A1004 SITE 1 AC3 3 VAL A 190 GLU A 196 GLU A 277 SITE 1 AC4 9 GLN A 239 ASP A 241 GLU A 252 ASN A 264 SITE 2 AC4 9 ASP A 265 CA A1002 HOH A1111 HOH A1112 SITE 3 AC4 9 HOH A1140 SITE 1 AC5 4 ARG A 270 HOH A1158 ARG B 270 HOH B1173 SITE 1 AC6 7 ASP B 215 ASP B 242 GLU B 252 ASP B 253 SITE 2 AC6 7 HOH B1141 HOH B1160 HOH B1162 SITE 1 AC7 6 GLN B 239 ASP B 241 GLU B 252 ASN B 264 SITE 2 AC7 6 ASP B 265 ZPF B1003 SITE 1 AC8 7 GLN B 239 ASP B 241 GLU B 252 ASN B 264 SITE 2 AC8 7 ASP B 265 CA B1002 HOH B1146 SITE 1 AC9 6 VAL B 190 GLU B 196 GLU B 277 HOH B1116 SITE 2 AC9 6 HOH B1130 HOH B1167 CRYST1 41.080 59.490 68.650 90.00 93.18 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024343 0.000000 0.001352 0.00000 SCALE2 0.000000 0.016810 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014589 0.00000