PDB Short entry for 5K7W HEADER TRANSFERASE 26-MAY-16 5K7W TITLE CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF METTL3/METTL14 COMPLEX TITLE 2 WITH SAH COMPND MOL_ID: 1; COMPND 2 MOLECULE: N6-ADENOSINE-METHYLTRANSFERASE 70 KDA SUBUNIT; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CATALYTIC DOMAIN RESIDUES 357-580; COMPND 5 SYNONYM: MT-A70,METHYLTRANSFERASE-LIKE PROTEIN 3; COMPND 6 EC: 2.1.1.62; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: N6-ADENOSINE-METHYLTRANSFERASE SUBUNIT METTL14; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: CATALYTIC DOMAIN RESIDUES 111-456; COMPND 12 SYNONYM: METHYLTRANSFERASE-LIKE PROTEIN 14; COMPND 13 EC: 2.1.1.62; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: METTL3, MTA70; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: METTL14, KIAA1627; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 14 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS METHYLTRANSFERASE, METHYLADENOSINE, M6A, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR P.WANG,K.A.DOXTADER,Y.NAM REVDAT 6 28-FEB-24 5K7W 1 REMARK REVDAT 5 08-JAN-20 5K7W 1 REMARK REVDAT 4 24-APR-19 5K7W 1 JRNL REMARK REVDAT 3 10-AUG-16 5K7W 1 JRNL REVDAT 2 20-JUL-16 5K7W 1 JRNL REVDAT 1 06-JUL-16 5K7W 0 JRNL AUTH P.WANG,K.A.DOXTADER,Y.NAM JRNL TITL STRUCTURAL BASIS FOR COOPERATIVE FUNCTION OF METTL3 AND JRNL TITL 2 METTL14 METHYLTRANSFERASES. JRNL REF MOL.CELL V. 63 306 2016 JRNL REFN ISSN 1097-2765 JRNL PMID 27373337 JRNL DOI 10.1016/J.MOLCEL.2016.05.041 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10_2155) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.79 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 75006 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.179 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 3774 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.8115 - 4.9492 0.99 2866 163 0.1797 0.2095 REMARK 3 2 4.9492 - 3.9289 1.00 2699 178 0.1398 0.1402 REMARK 3 3 3.9289 - 3.4325 1.00 2721 140 0.1425 0.1700 REMARK 3 4 3.4325 - 3.1187 1.00 2644 159 0.1603 0.1857 REMARK 3 5 3.1187 - 2.8952 1.00 2716 115 0.1658 0.1719 REMARK 3 6 2.8952 - 2.7245 1.00 2671 133 0.1632 0.1832 REMARK 3 7 2.7245 - 2.5881 1.00 2637 139 0.1611 0.1798 REMARK 3 8 2.5881 - 2.4754 1.00 2650 128 0.1634 0.1723 REMARK 3 9 2.4754 - 2.3802 1.00 2642 137 0.1639 0.1825 REMARK 3 10 2.3802 - 2.2980 1.00 2634 147 0.1555 0.1894 REMARK 3 11 2.2980 - 2.2262 1.00 2604 155 0.1569 0.1863 REMARK 3 12 2.2262 - 2.1625 1.00 2620 143 0.1568 0.1752 REMARK 3 13 2.1625 - 2.1056 1.00 2619 146 0.1502 0.1828 REMARK 3 14 2.1056 - 2.0542 1.00 2613 150 0.1546 0.1598 REMARK 3 15 2.0542 - 2.0075 1.00 2639 123 0.1493 0.1746 REMARK 3 16 2.0075 - 1.9648 1.00 2608 148 0.1568 0.1866 REMARK 3 17 1.9648 - 1.9255 1.00 2631 124 0.1670 0.1825 REMARK 3 18 1.9255 - 1.8892 1.00 2615 138 0.1655 0.2070 REMARK 3 19 1.8892 - 1.8554 1.00 2573 145 0.1572 0.1540 REMARK 3 20 1.8554 - 1.8240 1.00 2636 116 0.1614 0.1897 REMARK 3 21 1.8240 - 1.7946 1.00 2619 135 0.1652 0.2066 REMARK 3 22 1.7946 - 1.7669 1.00 2590 160 0.1638 0.1844 REMARK 3 23 1.7669 - 1.7410 1.00 2615 121 0.1700 0.2027 REMARK 3 24 1.7410 - 1.7164 1.00 2576 151 0.1756 0.1869 REMARK 3 25 1.7164 - 1.6932 1.00 2601 125 0.1829 0.2209 REMARK 3 26 1.6932 - 1.6712 1.00 2588 140 0.1898 0.2117 REMARK 3 27 1.6712 - 1.6504 0.99 2605 115 0.1978 0.2187 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.980 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 4143 REMARK 3 ANGLE : 0.924 5629 REMARK 3 CHIRALITY : 0.058 603 REMARK 3 PLANARITY : 0.006 729 REMARK 3 DIHEDRAL : 15.989 2477 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -21.5231 8.9624 -11.8504 REMARK 3 T TENSOR REMARK 3 T11: 0.0400 T22: 0.0695 REMARK 3 T33: 0.0503 T12: 0.0244 REMARK 3 T13: -0.0114 T23: 0.0054 REMARK 3 L TENSOR REMARK 3 L11: 0.7814 L22: 0.6137 REMARK 3 L33: 1.0858 L12: 0.0008 REMARK 3 L13: -0.2575 L23: 0.4188 REMARK 3 S TENSOR REMARK 3 S11: -0.0325 S12: -0.1753 S13: -0.0327 REMARK 3 S21: 0.0309 S22: 0.0629 S23: -0.0707 REMARK 3 S31: 0.0145 S32: 0.1325 S33: -0.0033 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5K7W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1000221870. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-FEB-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97934 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 75134 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 16.20 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 32.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS PH 8.0, 20% PEG3350, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.00450 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 50.97100 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 50.97100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 29.50225 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 50.97100 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 50.97100 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 88.50675 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 50.97100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.97100 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 29.50225 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 50.97100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.97100 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 88.50675 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 59.00450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 356 REMARK 465 GLN A 357 REMARK 465 SER A 358 REMARK 465 VAL A 359 REMARK 465 GLY A 360 REMARK 465 GLY A 361 REMARK 465 ASP A 362 REMARK 465 SER A 363 REMARK 465 SER A 364 REMARK 465 ALA A 365 REMARK 465 ASP A 366 REMARK 465 ARG A 367 REMARK 465 ILE A 573 REMARK 465 ILE A 574 REMARK 465 SER A 575 REMARK 465 LYS A 576 REMARK 465 PRO A 577 REMARK 465 LYS A 578 REMARK 465 ASN A 579 REMARK 465 LEU A 580 REMARK 465 GLY B 108 REMARK 465 SER B 109 REMARK 465 GLY B 110 REMARK 465 GLN B 111 REMARK 465 SER B 112 REMARK 465 LEU B 113 REMARK 465 ASN B 114 REMARK 465 PRO B 115 REMARK 465 PRO B 400 REMARK 465 PRO B 401 REMARK 465 PRO B 402 REMARK 465 LYS B 403 REMARK 465 SER B 404 REMARK 465 LYS B 405 REMARK 465 SER B 406 REMARK 465 ASP B 407 REMARK 465 ARG B 408 REMARK 465 GLY B 409 REMARK 465 GLY B 410 REMARK 465 GLY B 411 REMARK 465 ALA B 412 REMARK 465 PRO B 413 REMARK 465 ARG B 414 REMARK 465 GLY B 415 REMARK 465 GLY B 416 REMARK 465 GLY B 417 REMARK 465 ARG B 418 REMARK 465 GLY B 419 REMARK 465 GLY B 420 REMARK 465 THR B 421 REMARK 465 SER B 422 REMARK 465 ALA B 423 REMARK 465 GLY B 424 REMARK 465 ARG B 425 REMARK 465 GLY B 426 REMARK 465 ARG B 427 REMARK 465 GLU B 428 REMARK 465 ARG B 429 REMARK 465 ASN B 430 REMARK 465 ARG B 431 REMARK 465 SER B 432 REMARK 465 ASN B 433 REMARK 465 PHE B 434 REMARK 465 ARG B 435 REMARK 465 GLY B 436 REMARK 465 GLU B 437 REMARK 465 ARG B 438 REMARK 465 GLY B 439 REMARK 465 GLY B 440 REMARK 465 PHE B 441 REMARK 465 ARG B 442 REMARK 465 GLY B 443 REMARK 465 GLY B 444 REMARK 465 ARG B 445 REMARK 465 GLY B 446 REMARK 465 GLY B 447 REMARK 465 ALA B 448 REMARK 465 HIS B 449 REMARK 465 ARG B 450 REMARK 465 GLY B 451 REMARK 465 GLY B 452 REMARK 465 PHE B 453 REMARK 465 PRO B 454 REMARK 465 PRO B 455 REMARK 465 ARG B 456 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP B 214 O HOH B 501 2.10 REMARK 500 OE1 GLU B 318 O HOH B 502 2.11 REMARK 500 O HOH B 543 O HOH B 598 2.14 REMARK 500 O HOH B 629 O HOH B 749 2.17 REMARK 500 O HOH B 606 O HOH B 771 2.18 REMARK 500 O HOH B 736 O HOH B 824 2.19 REMARK 500 O HIS A 512 O HOH A 701 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 370 175.54 -59.56 REMARK 500 SER A 509 -135.05 42.06 REMARK 500 ASN A 543 -4.44 74.66 REMARK 500 ASP A 571 -91.98 -68.55 REMARK 500 PRO B 184 -165.29 -76.26 REMARK 500 GLU B 220 58.91 -97.07 REMARK 500 ASP B 301 43.61 -108.68 REMARK 500 ASP B 312 31.82 -89.89 REMARK 500 GLU B 320 153.85 -49.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 890 DISTANCE = 6.60 ANGSTROMS REMARK 525 HOH B 864 DISTANCE = 6.07 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAH A 601 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5K7U RELATED DB: PDB REMARK 900 RELATED ID: 5K7M RELATED DB: PDB DBREF 5K7W A 357 580 UNP Q86U44 MTA70_HUMAN 357 580 DBREF 5K7W B 111 456 UNP Q9HCE5 MET14_HUMAN 111 456 SEQADV 5K7W MET A 356 UNP Q86U44 INITIATING METHIONINE SEQADV 5K7W GLY B 108 UNP Q9HCE5 EXPRESSION TAG SEQADV 5K7W SER B 109 UNP Q9HCE5 EXPRESSION TAG SEQADV 5K7W GLY B 110 UNP Q9HCE5 EXPRESSION TAG SEQRES 1 A 225 MET GLN SER VAL GLY GLY ASP SER SER ALA ASP ARG LEU SEQRES 2 A 225 PHE PRO PRO GLN TRP ILE CYS CYS ASP ILE ARG TYR LEU SEQRES 3 A 225 ASP VAL SER ILE LEU GLY LYS PHE ALA VAL VAL MET ALA SEQRES 4 A 225 ASP PRO PRO TRP ASP ILE HIS MET GLU LEU PRO TYR GLY SEQRES 5 A 225 THR LEU THR ASP ASP GLU MET ARG ARG LEU ASN ILE PRO SEQRES 6 A 225 VAL LEU GLN ASP ASP GLY PHE LEU PHE LEU TRP VAL THR SEQRES 7 A 225 GLY ARG ALA MET GLU LEU GLY ARG GLU CYS LEU ASN LEU SEQRES 8 A 225 TRP GLY TYR GLU ARG VAL ASP GLU ILE ILE TRP VAL LYS SEQRES 9 A 225 THR ASN GLN LEU GLN ARG ILE ILE ARG THR GLY ARG THR SEQRES 10 A 225 GLY HIS TRP LEU ASN HIS GLY LYS GLU HIS CYS LEU VAL SEQRES 11 A 225 GLY VAL LYS GLY ASN PRO GLN GLY PHE ASN GLN GLY LEU SEQRES 12 A 225 ASP CYS ASP VAL ILE VAL ALA GLU VAL ARG SER THR SER SEQRES 13 A 225 HIS LYS PRO ASP GLU ILE TYR GLY MET ILE GLU ARG LEU SEQRES 14 A 225 SER PRO GLY THR ARG LYS ILE GLU LEU PHE GLY ARG PRO SEQRES 15 A 225 HIS ASN VAL GLN PRO ASN TRP ILE THR LEU GLY ASN GLN SEQRES 16 A 225 LEU ASP GLY ILE HIS LEU LEU ASP PRO ASP VAL VAL ALA SEQRES 17 A 225 ARG PHE LYS GLN ARG TYR PRO ASP GLY ILE ILE SER LYS SEQRES 18 A 225 PRO LYS ASN LEU SEQRES 1 B 349 GLY SER GLY GLN SER LEU ASN PRO HIS ASN ASP TYR CYS SEQRES 2 B 349 GLN HIS PHE VAL ASP THR GLY HIS ARG PRO GLN ASN PHE SEQRES 3 B 349 ILE ARG ASP VAL GLY LEU ALA ASP ARG PHE GLU GLU TYR SEQRES 4 B 349 PRO LYS LEU ARG GLU LEU ILE ARG LEU LYS ASP GLU LEU SEQRES 5 B 349 ILE ALA LYS SER ASN THR PRO PRO MET TYR LEU GLN ALA SEQRES 6 B 349 ASP ILE GLU ALA PHE ASP ILE ARG GLU LEU THR PRO LYS SEQRES 7 B 349 PHE ASP VAL ILE LEU LEU GLU PRO PRO LEU GLU GLU TYR SEQRES 8 B 349 TYR ARG GLU THR GLY ILE THR ALA ASN GLU LYS CYS TRP SEQRES 9 B 349 THR TRP ASP ASP ILE MET LYS LEU GLU ILE ASP GLU ILE SEQRES 10 B 349 ALA ALA PRO ARG SER PHE ILE PHE LEU TRP CYS GLY SER SEQRES 11 B 349 GLY GLU GLY LEU ASP LEU GLY ARG VAL CYS LEU ARG LYS SEQRES 12 B 349 TRP GLY TYR ARG ARG CYS GLU ASP ILE CYS TRP ILE LYS SEQRES 13 B 349 THR ASN LYS ASN ASN PRO GLY LYS THR LYS THR LEU ASP SEQRES 14 B 349 PRO LYS ALA VAL PHE GLN ARG THR LYS GLU HIS CYS LEU SEQRES 15 B 349 MET GLY ILE LYS GLY THR VAL LYS ARG SER THR ASP GLY SEQRES 16 B 349 ASP PHE ILE HIS ALA ASN VAL ASP ILE ASP LEU ILE ILE SEQRES 17 B 349 THR GLU GLU PRO GLU ILE GLY ASN ILE GLU LYS PRO VAL SEQRES 18 B 349 GLU ILE PHE HIS ILE ILE GLU HIS PHE CYS LEU GLY ARG SEQRES 19 B 349 ARG ARG LEU HIS LEU PHE GLY ARG ASP SER THR ILE ARG SEQRES 20 B 349 PRO GLY TRP LEU THR VAL GLY PRO THR LEU THR ASN SER SEQRES 21 B 349 ASN TYR ASN ALA GLU THR TYR ALA SER TYR PHE SER ALA SEQRES 22 B 349 PRO ASN SER TYR LEU THR GLY CYS THR GLU GLU ILE GLU SEQRES 23 B 349 ARG LEU ARG PRO LYS SER PRO PRO PRO LYS SER LYS SER SEQRES 24 B 349 ASP ARG GLY GLY GLY ALA PRO ARG GLY GLY GLY ARG GLY SEQRES 25 B 349 GLY THR SER ALA GLY ARG GLY ARG GLU ARG ASN ARG SER SEQRES 26 B 349 ASN PHE ARG GLY GLU ARG GLY GLY PHE ARG GLY GLY ARG SEQRES 27 B 349 GLY GLY ALA HIS ARG GLY GLY PHE PRO PRO ARG HET SAH A 601 26 HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE FORMUL 3 SAH C14 H20 N6 O5 S FORMUL 4 HOH *554(H2 O) HELIX 1 AA1 ASP A 382 GLY A 387 5 6 HELIX 2 AA2 THR A 410 ARG A 416 1 7 HELIX 3 AA3 ASN A 418 GLN A 423 5 6 HELIX 4 AA4 ARG A 435 TRP A 447 1 13 HELIX 5 AA5 ASP A 515 SER A 525 1 11 HELIX 6 AA6 ARG A 536 VAL A 540 5 5 HELIX 7 AA7 ASP A 558 TYR A 569 1 12 HELIX 8 AA8 ASP B 118 GLY B 127 1 10 HELIX 9 AA9 ARG B 129 ILE B 134 5 6 HELIX 10 AB1 ALA B 140 GLU B 144 5 5 HELIX 11 AB2 TYR B 146 ASN B 164 1 19 HELIX 12 AB3 ASP B 178 LEU B 182 5 5 HELIX 13 AB4 LEU B 195 GLU B 201 1 7 HELIX 14 AB5 THR B 212 LYS B 218 1 7 HELIX 15 AB6 GLU B 220 GLU B 223 5 4 HELIX 16 AB7 GLU B 239 GLY B 252 1 14 HELIX 17 AB8 VAL B 328 CYS B 338 1 11 HELIX 18 AB9 ARG B 349 ILE B 353 5 5 HELIX 19 AC1 ASN B 370 TYR B 377 1 8 HELIX 20 AC2 THR B 389 ARG B 396 1 8 SHEET 1 AA1 9 VAL A 502 GLU A 506 0 SHEET 2 AA1 9 GLU A 450 THR A 460 1 N VAL A 458 O ILE A 503 SHEET 3 AA1 9 LYS A 480 LYS A 488 -1 O GLU A 481 N TRP A 457 SHEET 4 AA1 9 GLY A 426 VAL A 432 -1 N LEU A 430 O LEU A 484 SHEET 5 AA1 9 VAL A 391 ALA A 394 1 N ALA A 394 O PHE A 429 SHEET 6 AA1 9 LYS A 530 LEU A 533 1 O LEU A 533 N MET A 393 SHEET 7 AA1 9 TRP A 544 GLY A 548 1 O ILE A 545 N GLU A 532 SHEET 8 AA1 9 GLN A 372 CYS A 375 1 N ILE A 374 O THR A 546 SHEET 9 AA1 9 ILE A 554 HIS A 555 -1 O HIS A 555 N TRP A 373 SHEET 1 AA2 8 MET B 168 GLN B 171 0 SHEET 2 AA2 8 LEU B 358 GLY B 361 1 O THR B 359 N MET B 168 SHEET 3 AA2 8 ARG B 343 LEU B 346 1 N HIS B 345 O LEU B 358 SHEET 4 AA2 8 PHE B 186 LEU B 191 1 N LEU B 190 O LEU B 344 SHEET 5 AA2 8 ALA B 225 TRP B 234 1 O PHE B 232 N LEU B 191 SHEET 6 AA2 8 LYS B 285 LYS B 293 -1 O LEU B 289 N LEU B 233 SHEET 7 AA2 8 ARG B 254 THR B 264 -1 N TRP B 261 O GLU B 286 SHEET 8 AA2 8 LEU B 313 GLU B 317 1 O ILE B 314 N ILE B 262 CISPEP 1 THR B 183 PRO B 184 0 -4.67 CISPEP 2 ALA B 380 PRO B 381 0 6.62 SITE 1 AC1 17 CYS A 376 ASP A 377 ILE A 378 ASP A 395 SITE 2 AC1 17 SER A 511 HIS A 512 LYS A 513 PHE A 534 SITE 3 AC1 17 ARG A 536 HIS A 538 ASN A 539 GLY A 548 SITE 4 AC1 17 ASN A 549 GLN A 550 HOH A 712 HOH A 719 SITE 5 AC1 17 HOH A 768 CRYST1 101.942 101.942 118.009 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009809 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009809 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008474 0.00000