PDB Short entry for 5LAL HEADER PLANT PROTEIN 14-JUN-16 5LAL TITLE STRUCTURE OF ARABIDOPSIS DIRIGENT PROTEIN ATDIR6 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIRIGENT PROTEIN 6; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ATDIR6; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: DIR6, AT4G23690, F9D16.160; SOURCE 6 EXPRESSION_SYSTEM: ARABIDOPSIS THALIANA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: THALE CRESS; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 3702; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PART27 KEYWDS ALL BETA, PROTEIN BINDING, PLANT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.GASPER,P.KOLESINSKI,B.TERLECKA,I.EFFENBERGER,A.SCHALLER,E.HOFMANN REVDAT 5 10-JAN-24 5LAL 1 HETSYN LINK REVDAT 4 29-JUL-20 5LAL 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 06-SEP-17 5LAL 1 REMARK REVDAT 2 07-DEC-16 5LAL 1 JRNL REVDAT 1 09-NOV-16 5LAL 0 JRNL AUTH R.GASPER,I.EFFENBERGER,P.KOLESINSKI,B.TERLECKA,E.HOFMANN, JRNL AUTH 2 A.SCHALLER JRNL TITL DIRIGENT PROTEIN MODE OF ACTION REVEALED BY THE CRYSTAL JRNL TITL 2 STRUCTURE OF ATDIR6. JRNL REF PLANT PHYSIOL. V. 172 2165 2016 JRNL REFN ESSN 1532-2548 JRNL PMID 27756822 JRNL DOI 10.1104/PP.16.01281 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.11 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.930 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 67688 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.186 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 3375 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.1232 - 4.0371 1.00 2679 142 0.1464 0.1720 REMARK 3 2 4.0371 - 3.2048 1.00 2699 143 0.1473 0.1604 REMARK 3 3 3.2048 - 2.7998 1.00 2671 140 0.1563 0.1507 REMARK 3 4 2.7998 - 2.5439 1.00 2678 141 0.1614 0.1634 REMARK 3 5 2.5439 - 2.3616 1.00 2687 141 0.1613 0.1875 REMARK 3 6 2.3616 - 2.2223 1.00 2664 141 0.1521 0.1718 REMARK 3 7 2.2223 - 2.1111 1.00 2673 140 0.1592 0.1866 REMARK 3 8 2.1111 - 2.0192 1.00 2714 143 0.1583 0.1674 REMARK 3 9 2.0192 - 1.9414 1.00 2652 140 0.1558 0.1930 REMARK 3 10 1.9414 - 1.8744 1.00 2675 140 0.1620 0.1635 REMARK 3 11 1.8744 - 1.8158 1.00 2711 143 0.1650 0.1786 REMARK 3 12 1.8158 - 1.7639 1.00 2663 140 0.1742 0.2095 REMARK 3 13 1.7639 - 1.7175 1.00 2691 142 0.1834 0.2056 REMARK 3 14 1.7175 - 1.6756 1.00 2653 140 0.1991 0.2342 REMARK 3 15 1.6756 - 1.6375 1.00 2717 143 0.2150 0.2319 REMARK 3 16 1.6375 - 1.6026 1.00 2690 141 0.2181 0.2466 REMARK 3 17 1.6026 - 1.5706 1.00 2669 141 0.2252 0.2426 REMARK 3 18 1.5706 - 1.5409 1.00 2695 136 0.2386 0.2851 REMARK 3 19 1.5409 - 1.5134 1.00 2682 138 0.2707 0.3176 REMARK 3 20 1.5134 - 1.4878 1.00 2640 137 0.2798 0.2897 REMARK 3 21 1.4878 - 1.4638 1.00 2694 144 0.3024 0.3219 REMARK 3 22 1.4638 - 1.4413 1.00 2683 139 0.3576 0.3852 REMARK 3 23 1.4413 - 1.4201 1.00 2675 141 0.3882 0.3649 REMARK 3 24 1.4201 - 1.4001 0.99 2658 139 0.4540 0.4720 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.340 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.53 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 3038 REMARK 3 ANGLE : 1.100 4073 REMARK 3 CHIRALITY : 0.090 466 REMARK 3 PLANARITY : 0.008 485 REMARK 3 DIHEDRAL : 16.062 1211 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5LAL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-JUN-16. REMARK 100 THE DEPOSITION ID IS D_1200000424. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-JUN-15; 26-MAY-15 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; N REMARK 200 RADIATION SOURCE : SLS; ROTATING ANODE REMARK 200 BEAMLINE : X10SA; NULL REMARK 200 X-RAY GENERATOR MODEL : NULL; RIGAKU FR-D REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00005; 1.5418 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL; IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M; MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 67700 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.980 REMARK 200 R MERGE (I) : 0.13500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.1300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 2.19600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.050 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4REV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SPG BUFFER PH 7.0, 22.5 % PEG REMARK 280 1000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 50.54500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 29.18217 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 30.08000 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 50.54500 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 29.18217 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 30.08000 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 50.54500 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 29.18217 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 30.08000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 58.36434 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 60.16000 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 58.36434 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 60.16000 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 58.36434 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 60.16000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 43.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 18960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 78.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PHE A 30 REMARK 465 ARG A 31 REMARK 465 LYS A 32 REMARK 465 THR A 33 REMARK 465 ILE A 34 REMARK 465 PHE B 30 REMARK 465 ARG B 31 REMARK 465 LYS B 32 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD21 ASN A 123 C1 NAG D 1 1.54 REMARK 500 HH12 ARG B 176 O HOH B 302 1.55 REMARK 500 OE2 GLU B 185 HH TYR B 187 1.59 REMARK 500 HZ3 LYS A 75 O HOH A 302 1.59 REMARK 500 O3 BMA C 3 C1 MAN A 206 1.61 REMARK 500 O3 NAG C 1 C1 FUC A 207 1.62 REMARK 500 O3 BMA E 3 C1 MAN B 207 1.66 REMARK 500 O4 NAG D 1 O5 NAG D 2 1.78 REMARK 500 O2 BMA F 3 C2 XYP F 4 1.97 REMARK 500 ND2 ASN B 123 C2 NAG F 1 1.99 REMARK 500 NZ LYS A 78 O HOH A 301 2.06 REMARK 500 OD2 ASP B 180 O HOH B 301 2.07 REMARK 500 O4 NAG F 2 C2 BMA F 3 2.08 REMARK 500 O HOH A 301 O HOH A 302 2.08 REMARK 500 NE2 HIS A 42 OD2 ASP A 180 2.12 REMARK 500 NH1 ARG A 159 OE2 GLU A 185 2.12 REMARK 500 O2 BMA C 3 O5 XYP C 4 2.13 REMARK 500 CG ASN B 123 C1 NAG F 1 2.13 REMARK 500 O6 BMA E 3 C2 MAN E 5 2.15 REMARK 500 O4 NAG F 1 O5 NAG F 2 2.16 REMARK 500 NE2 HIS B 42 OD2 ASP B 180 2.16 REMARK 500 O3 NAG F 1 C2 FUC F 7 2.18 REMARK 500 O2 BMA F 3 O5 XYP F 4 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP A 154 O4 MAN F 6 8444 1.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PHE B 43 CB - CA - C ANGL. DEV. = -12.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 36 -169.88 175.86 REMARK 500 ASP A 107 32.38 -150.24 REMARK 500 PHE A 156 119.34 -38.72 REMARK 500 ASP B 107 31.73 -151.62 REMARK 500 ASP B 107 30.64 -151.62 REMARK 500 ASN B 123 59.23 -145.08 REMARK 500 PHE B 156 118.67 -39.31 REMARK 500 PHE B 156 119.20 -39.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 MAN A 206 REMARK 610 FUC A 207 REMARK 610 MAN B 207 DBREF 5LAL A 30 187 UNP Q9SUQ8 DIR6_ARATH 30 187 DBREF 5LAL B 30 187 UNP Q9SUQ8 DIR6_ARATH 30 187 SEQRES 1 A 158 PHE ARG LYS THR ILE ASP GLN LYS LYS PRO CYS LYS HIS SEQRES 2 A 158 PHE SER PHE TYR PHE HIS ASP ILE LEU TYR ASP GLY ASP SEQRES 3 A 158 ASN VAL ALA ASN ALA THR SER ALA ALA ILE VAL SER PRO SEQRES 4 A 158 PRO GLY LEU GLY ASN PHE LYS PHE GLY LYS PHE VAL ILE SEQRES 5 A 158 PHE ASP GLY PRO ILE THR MET ASP LYS ASN TYR LEU SER SEQRES 6 A 158 LYS PRO VAL ALA ARG ALA GLN GLY PHE TYR PHE TYR ASP SEQRES 7 A 158 MET LYS MET ASP PHE ASN SER TRP PHE SER TYR THR LEU SEQRES 8 A 158 VAL PHE ASN SER THR GLU HIS LYS GLY THR LEU ASN ILE SEQRES 9 A 158 MET GLY ALA ASP LEU MET MET GLU PRO THR ARG ASP LEU SEQRES 10 A 158 SER VAL VAL GLY GLY THR GLY ASP PHE PHE MET ALA ARG SEQRES 11 A 158 GLY ILE ALA THR PHE VAL THR ASP LEU PHE GLN GLY ALA SEQRES 12 A 158 LYS TYR PHE ARG VAL LYS MET ASP ILE LYS LEU TYR GLU SEQRES 13 A 158 CYS TYR SEQRES 1 B 158 PHE ARG LYS THR ILE ASP GLN LYS LYS PRO CYS LYS HIS SEQRES 2 B 158 PHE SER PHE TYR PHE HIS ASP ILE LEU TYR ASP GLY ASP SEQRES 3 B 158 ASN VAL ALA ASN ALA THR SER ALA ALA ILE VAL SER PRO SEQRES 4 B 158 PRO GLY LEU GLY ASN PHE LYS PHE GLY LYS PHE VAL ILE SEQRES 5 B 158 PHE ASP GLY PRO ILE THR MET ASP LYS ASN TYR LEU SER SEQRES 6 B 158 LYS PRO VAL ALA ARG ALA GLN GLY PHE TYR PHE TYR ASP SEQRES 7 B 158 MET LYS MET ASP PHE ASN SER TRP PHE SER TYR THR LEU SEQRES 8 B 158 VAL PHE ASN SER THR GLU HIS LYS GLY THR LEU ASN ILE SEQRES 9 B 158 MET GLY ALA ASP LEU MET MET GLU PRO THR ARG ASP LEU SEQRES 10 B 158 SER VAL VAL GLY GLY THR GLY ASP PHE PHE MET ALA ARG SEQRES 11 B 158 GLY ILE ALA THR PHE VAL THR ASP LEU PHE GLN GLY ALA SEQRES 12 B 158 LYS TYR PHE ARG VAL LYS MET ASP ILE LYS LEU TYR GLU SEQRES 13 B 158 CYS TYR HET NAG C 1 26 HET NAG C 2 27 HET BMA C 3 19 HET XYP C 4 18 HET MAN C 5 22 HET NAG D 1 27 HET NAG D 2 27 HET NAG E 1 26 HET NAG E 2 27 HET BMA E 3 20 HET XYP E 4 18 HET MAN E 5 22 HET FUC E 6 21 HET NAG F 1 25 HET NAG F 2 26 HET BMA F 3 18 HET XYP F 4 18 HET MAN F 5 22 HET MAN F 6 22 HET FUC F 7 21 HET MAN A 206 22 HET FUC A 207 21 HET EDO A 210 10 HET EDO A 211 10 HET EDO A 212 10 HET EDO A 213 10 HET EDO A 214 10 HET GLY A 215 7 HET GLY A 216 10 HET MAN B 207 22 HET EDO B 215 10 HET EDO B 216 10 HET EDO B 217 10 HET GLY B 218 7 HET GLY B 219 10 HET GLY B 220 10 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM XYP BETA-D-XYLOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM EDO 1,2-ETHANEDIOL HETNAM GLY GLYCINE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN XYP BETA-D-XYLOSE; D-XYLOSE; XYLOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 NAG 8(C8 H15 N O6) FORMUL 3 BMA 3(C6 H12 O6) FORMUL 3 XYP 3(C5 H10 O5) FORMUL 3 MAN 6(C6 H12 O6) FORMUL 5 FUC 3(C6 H12 O5) FORMUL 9 EDO 8(C2 H6 O2) FORMUL 14 GLY 5(C2 H5 N O2) FORMUL 23 HOH *189(H2 O) SHEET 1 AA1 5 SER A 62 ALA A 64 0 SHEET 2 AA1 5 PHE A 79 THR A 87 -1 O ILE A 81 N ALA A 63 SHEET 3 AA1 5 LYS A 41 ILE A 50 -1 N TYR A 46 O THR A 87 SHEET 4 AA1 5 TYR A 174 CYS A 186 -1 O MET A 179 N PHE A 45 SHEET 5 AA1 5 ILE B 34 ASP B 35 1 O ILE B 34 N CYS A 186 SHEET 1 AA2 9 SER A 62 ALA A 64 0 SHEET 2 AA2 9 PHE A 79 THR A 87 -1 O ILE A 81 N ALA A 63 SHEET 3 AA2 9 ALA A 98 TYR A 106 -1 O TYR A 104 N VAL A 80 SHEET 4 AA2 9 SER A 114 ASN A 123 -1 O VAL A 121 N ARG A 99 SHEET 5 AA2 9 LYS A 128 ASP A 137 -1 O GLY A 129 N PHE A 122 SHEET 6 AA2 9 ARG A 144 GLY A 153 -1 O SER A 147 N MET A 134 SHEET 7 AA2 9 ARG A 159 GLN A 170 -1 O ALA A 162 N LEU A 146 SHEET 8 AA2 9 TYR A 174 CYS A 186 -1 O LYS A 182 N ILE A 161 SHEET 9 AA2 9 ILE B 34 ASP B 35 1 O ILE B 34 N CYS A 186 SHEET 1 AA310 SER B 62 ALA B 64 0 SHEET 2 AA310 PHE B 79 THR B 87 -1 O ILE B 81 N ALA B 63 SHEET 3 AA310 ALA B 98 TYR B 106 -1 O TYR B 104 N VAL B 80 SHEET 4 AA310 SER B 114 ASN B 123 -1 O VAL B 121 N ARG B 99 SHEET 5 AA310 LYS B 128 ASP B 137 -1 O GLY B 129 N PHE B 122 SHEET 6 AA310 ARG B 144 GLY B 153 -1 O GLY B 150 N ASN B 132 SHEET 7 AA310 ARG B 159 GLN B 170 -1 O ALA B 162 N LEU B 146 SHEET 8 AA310 TYR B 174 GLU B 185 -1 O TYR B 174 N GLN B 170 SHEET 9 AA310 LYS B 41 ILE B 50 -1 N PHE B 45 O MET B 179 SHEET 10 AA310 PHE B 79 THR B 87 -1 O THR B 87 N TYR B 46 SSBOND 1 CYS A 40 CYS A 186 1555 1555 2.03 SSBOND 2 CYS B 40 CYS B 186 1555 1555 2.04 LINK ND2 ASN A 59 C1 NAG C 1 1555 1555 1.42 LINK ND2 ASN A 123 C1 NAG D 1 1555 1555 1.46 LINK ND2 ASN B 59 C1 NAG E 1 1555 1555 1.40 LINK ND2 ASN B 123 C1 NAG F 1 1555 1555 1.58 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.38 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.46 LINK O2 BMA C 3 C1 XYP C 4 1555 1555 1.29 LINK O6 BMA C 3 C1 MAN C 5 1555 1555 1.30 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.36 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.34 LINK O3 NAG E 1 C1 FUC E 6 1555 1555 1.49 LINK O4 NAG E 2 C1 BMA E 3 1555 1555 1.46 LINK O2 BMA E 3 C1 XYP E 4 1555 1555 1.42 LINK O6 BMA E 3 C1 MAN E 5 1555 1555 1.39 LINK O4 NAG F 1 C1 NAG F 2 1555 1555 1.34 LINK O3 NAG F 1 C1 FUC F 7 1555 1555 1.30 LINK O4 NAG F 2 C1 BMA F 3 1555 1555 1.33 LINK O2 BMA F 3 C1 XYP F 4 1555 1555 1.21 LINK O3 BMA F 3 C1 MAN F 5 1555 1555 1.44 LINK O6 BMA F 3 C1 MAN F 6 1555 1555 1.46 CRYST1 101.090 101.090 90.240 90.00 90.00 120.00 H 3 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009892 0.005711 0.000000 0.00000 SCALE2 0.000000 0.011423 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011082 0.00000