PDB Short entry for 5LEV HEADER TRANSFERASE 30-JUN-16 5LEV TITLE CRYSTAL STRUCTURE OF HUMAN UDP-N-ACETYLGLUCOSAMINE-DOLICHYL-PHOSPHATE TITLE 2 N-ACETYLGLUCOSAMINEPHOSPHOTRANSFERASE (DPAGT1) (V264G MUTANT) COMPND MOL_ID: 1; COMPND 2 MOLECULE: UDP-N-ACETYLGLUCOSAMINE--DOLICHYL-PHOSPHATE N- COMPND 3 ACETYLGLUCOSAMINEPHOSPHOTRANSFERASE; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: GLCNAC-1-P TRANSFERASE,GPT,N-ACETYLGLUCOSAMINE-1-PHOSPHATE COMPND 6 TRANSFERASE; COMPND 7 EC: 2.7.8.15; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DPAGT1, DPAGT2; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PFB-LIC-BSE KEYWDS PROTEIN GLYCOSYLATION, INTEGRAL MEMBRANE PROTEIN, CONGENITAL KEYWDS 2 MYASTHENIC SYNDROME 13, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS KEYWDS 3 CONSORTIUM, SGC, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.C.W.PIKE,Y.Y.DONG,A.CHU,A.TESSITORE,S.GOUBIN,L.DONG,S.MUKHOPADHYAY, AUTHOR 2 P.MAHAJAN,R.CHALK,G.BERRIDGE,D.WANG,K.KUPINSKA,K.BELAYA,D.BEESON, AUTHOR 3 N.BURGESS-BROWN,A.M.EDWARDS,C.H.ARROWSMITH,C.BOUNTRA,E.P.CARPENTER, AUTHOR 4 STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 2 20-NOV-19 5LEV 1 JRNL REVDAT 1 28-DEC-16 5LEV 0 JRNL AUTH Y.Y.DONG,H.WANG,A.C.W.PIKE,S.A.COCHRANE,S.HAMEDZADEH, JRNL AUTH 2 F.J.WYSZYNSKI,S.R.BUSHELL,S.F.ROYER,D.A.WIDDICK,A.SAJID, JRNL AUTH 3 H.I.BOSHOFF,Y.PARK,R.LUCAS,W.M.LIU,S.S.LEE,T.MACHIDA, JRNL AUTH 4 L.MINALL,S.MEHMOOD,K.BELAYA,W.W.LIU,A.CHU,L.SHRESTHA, JRNL AUTH 5 S.M.M.MUKHOPADHYAY,C.STRAIN-DAMERELL,R.CHALK, JRNL AUTH 6 N.A.BURGESS-BROWN,M.J.BIBB,C.E.BARRY III,C.V.ROBINSON, JRNL AUTH 7 D.BEESON,B.G.DAVIS,E.P.CARPENTER JRNL TITL STRUCTURES OF DPAGT1 EXPLAIN GLYCOSYLATION DISEASE JRNL TITL 2 MECHANISMS AND ADVANCE TB ANTIBIOTIC DESIGN. JRNL REF CELL V. 175 1045 2018 JRNL REFN ISSN 1097-4172 JRNL PMID 30388443 JRNL DOI 10.1016/J.CELL.2018.10.037 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.71 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 12893 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.235 REMARK 3 R VALUE (WORKING SET) : 0.234 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.160 REMARK 3 FREE R VALUE TEST SET COUNT : 665 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.50 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.50 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2825 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2104 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2674 REMARK 3 BIN R VALUE (WORKING SET) : 0.2097 REMARK 3 BIN FREE R VALUE : 0.2241 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.35 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 151 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2846 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 22 REMARK 3 SOLVENT ATOMS : 14 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 120.5 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 142.5 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.07240 REMARK 3 B22 (A**2) : 3.07240 REMARK 3 B33 (A**2) : -6.14480 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.438 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 1.362 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.366 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 1.093 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.365 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.897 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.910 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2935 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 3999 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1295 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 42 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 433 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2935 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 401 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3616 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 0.99 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.08 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 2.83 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: {A|8 - 403} REMARK 3 ORIGIN FOR THE GROUP (A): 46.1881 50.2503 128.2110 REMARK 3 T TENSOR REMARK 3 T11: -0.5377 T22: 0.1204 REMARK 3 T33: -0.3809 T12: -0.1136 REMARK 3 T13: 0.0373 T23: 0.1660 REMARK 3 L TENSOR REMARK 3 L11: 4.4657 L22: 5.2402 REMARK 3 L33: 4.4243 L12: 1.5173 REMARK 3 L13: -1.3504 L23: -0.5395 REMARK 3 S TENSOR REMARK 3 S11: -0.1307 S12: 0.7644 S13: 0.6582 REMARK 3 S21: -0.3363 S22: 0.3576 S23: -0.3320 REMARK 3 S31: -0.4939 S32: 0.8695 S33: -0.2270 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: DATA WERE SCALED WITH AIMLESS AND THEN REMARK 3 ANISOTROPICALLY TRUNCATED WITH STARANISO. STRUCTURE REFINED WITH REMARK 3 BUSTER WITH A SINGLE TLS GROUP. ELECTRON DENSITY MAPS WERE REMARK 3 SHARPENED WITH -100A**2 BFACTOR FOR REBUILDING IN COOT. REMARK 4 REMARK 4 5LEV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-JUL-16. REMARK 100 THE DEPOSITION ID IS D_1200000631. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JAN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9686 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS OCT 15, 2015 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.26 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13206 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 59.790 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.60 REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 13.30 REMARK 200 R MERGE FOR SHELL (I) : 2.36000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.7 REMARK 200 STARTING MODEL: 4J72 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BICINE PH 9.0, 0.05M SODIUM REMARK 280 CHLORIDE, 38% PEG300, 5MM NA2WO4, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 159.43333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 79.71667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 119.57500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 39.85833 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 199.29167 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 159.43333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 79.71667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 39.85833 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 119.57500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 199.29167 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 TRP A 2 REMARK 465 ALA A 3 REMARK 465 PHE A 4 REMARK 465 SER A 5 REMARK 465 GLU A 6 REMARK 465 LEU A 7 REMARK 465 ASN A 80 REMARK 465 CYS A 81 REMARK 465 PHE A 82 REMARK 465 VAL A 83 REMARK 465 LYS A 84 REMARK 465 GLU A 85 REMARK 465 GLN A 86 REMARK 465 CYS A 87 REMARK 465 LYS A 88 REMARK 465 ALA A 89 REMARK 465 PHE A 90 REMARK 465 PRO A 152 REMARK 465 LYS A 153 REMARK 465 PRO A 154 REMARK 465 PHE A 155 REMARK 465 ARG A 156 REMARK 465 PRO A 157 REMARK 465 ILE A 158 REMARK 465 LEU A 159 REMARK 465 GLY A 160 REMARK 465 LEU A 161 REMARK 465 LEU A 404 REMARK 465 PHE A 405 REMARK 465 TYR A 406 REMARK 465 ASP A 407 REMARK 465 VAL A 408 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 9 CG SD CE REMARK 470 ARG A 40 NE CZ NH1 NH2 REMARK 470 PHE A 78 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU A 94 CG CD OE1 OE2 REMARK 470 ARG A 121 NE CZ NH1 NH2 REMARK 470 ARG A 123 CD NE CZ NH1 NH2 REMARK 470 ILE A 149 CG1 CG2 CD1 REMARK 470 VAL A 150 CG1 CG2 REMARK 470 HIS A 162 CG ND1 CD2 CE1 NE2 REMARK 470 ASP A 216 CG OD1 OD2 REMARK 470 LYS A 273 CG CD CE NZ REMARK 470 HIS A 302 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 306 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 310 CD CE NZ REMARK 470 LYS A 320 CG CD CE NZ REMARK 470 PHE A 321 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 322 CG CD CE NZ REMARK 470 LYS A 324 CG CD CE NZ REMARK 470 SER A 325 OG REMARK 470 PHE A 328 CG CD1 CD2 CE1 CE2 CZ REMARK 470 THR A 331 OG1 CG2 REMARK 470 LEU A 334 CG CD1 CD2 REMARK 470 LYS A 335 CG CD CE NZ REMARK 470 SER A 339 OG REMARK 470 GLN A 341 CG CD OE1 NE2 REMARK 470 HIS A 346 ND1 CD2 CE1 NE2 REMARK 470 GLU A 349 CG CD OE1 OE2 REMARK 470 GLU A 351 CG CD OE1 OE2 REMARK 470 ASP A 352 CG OD1 OD2 REMARK 470 PHE A 355 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ILE A 364 CG1 CG2 CD1 REMARK 470 ARG A 403 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 74 -54.02 -25.82 REMARK 500 ASN A 119 71.64 51.93 REMARK 500 PHE A 144 75.63 45.43 REMARK 500 LEU A 187 72.52 -101.95 REMARK 500 ASP A 216 -99.57 52.75 REMARK 500 GLN A 400 76.37 58.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PC1 A 501 DBREF 5LEV A 1 408 UNP Q9H3H5 GPT_HUMAN 1 408 SEQADV 5LEV SER A 0 UNP Q9H3H5 EXPRESSION TAG SEQADV 5LEV GLY A 264 UNP Q9H3H5 VAL 264 ENGINEERED MUTATION SEQRES 1 A 409 SER MET TRP ALA PHE SER GLU LEU PRO MET PRO LEU LEU SEQRES 2 A 409 ILE ASN LEU ILE VAL SER LEU LEU GLY PHE VAL ALA THR SEQRES 3 A 409 VAL THR LEU ILE PRO ALA PHE ARG GLY HIS PHE ILE ALA SEQRES 4 A 409 ALA ARG LEU CYS GLY GLN ASP LEU ASN LYS THR SER ARG SEQRES 5 A 409 GLN GLN ILE PRO GLU SER GLN GLY VAL ILE SER GLY ALA SEQRES 6 A 409 VAL PHE LEU ILE ILE LEU PHE CYS PHE ILE PRO PHE PRO SEQRES 7 A 409 PHE LEU ASN CYS PHE VAL LYS GLU GLN CYS LYS ALA PHE SEQRES 8 A 409 PRO HIS HIS GLU PHE VAL ALA LEU ILE GLY ALA LEU LEU SEQRES 9 A 409 ALA ILE CYS CYS MET ILE PHE LEU GLY PHE ALA ASP ASP SEQRES 10 A 409 VAL LEU ASN LEU ARG TRP ARG HIS LYS LEU LEU LEU PRO SEQRES 11 A 409 THR ALA ALA SER LEU PRO LEU LEU MET VAL TYR PHE THR SEQRES 12 A 409 ASN PHE GLY ASN THR THR ILE VAL VAL PRO LYS PRO PHE SEQRES 13 A 409 ARG PRO ILE LEU GLY LEU HIS LEU ASP LEU GLY ILE LEU SEQRES 14 A 409 TYR TYR VAL TYR MET GLY LEU LEU ALA VAL PHE CYS THR SEQRES 15 A 409 ASN ALA ILE ASN ILE LEU ALA GLY ILE ASN GLY LEU GLU SEQRES 16 A 409 ALA GLY GLN SER LEU VAL ILE SER ALA SER ILE ILE VAL SEQRES 17 A 409 PHE ASN LEU VAL GLU LEU GLU GLY ASP CYS ARG ASP ASP SEQRES 18 A 409 HIS VAL PHE SER LEU TYR PHE MET ILE PRO PHE PHE PHE SEQRES 19 A 409 THR THR LEU GLY LEU LEU TYR HIS ASN TRP TYR PRO SER SEQRES 20 A 409 ARG VAL PHE VAL GLY ASP THR PHE CYS TYR PHE ALA GLY SEQRES 21 A 409 MET THR PHE ALA GLY VAL GLY ILE LEU GLY HIS PHE SER SEQRES 22 A 409 LYS THR MET LEU LEU PHE PHE MET PRO GLN VAL PHE ASN SEQRES 23 A 409 PHE LEU TYR SER LEU PRO GLN LEU LEU HIS ILE ILE PRO SEQRES 24 A 409 CYS PRO ARG HIS ARG ILE PRO ARG LEU ASN ILE LYS THR SEQRES 25 A 409 GLY LYS LEU GLU MET SER TYR SER LYS PHE LYS THR LYS SEQRES 26 A 409 SER LEU SER PHE LEU GLY THR PHE ILE LEU LYS VAL ALA SEQRES 27 A 409 GLU SER LEU GLN LEU VAL THR VAL HIS GLN SER GLU THR SEQRES 28 A 409 GLU ASP GLY GLU PHE THR GLU CYS ASN ASN MET THR LEU SEQRES 29 A 409 ILE ASN LEU LEU LEU LYS VAL LEU GLY PRO ILE HIS GLU SEQRES 30 A 409 ARG ASN LEU THR LEU LEU LEU LEU LEU LEU GLN ILE LEU SEQRES 31 A 409 GLY SER ALA ILE THR PHE SER ILE ARG TYR GLN LEU VAL SEQRES 32 A 409 ARG LEU PHE TYR ASP VAL HET UNL A 501 22 HETNAM UNL UNKNOWN LIGAND FORMUL 3 HOH *14(H2 O) HELIX 1 AA1 PRO A 8 PHE A 32 1 25 HELIX 2 AA2 PHE A 32 ALA A 39 1 8 HELIX 3 AA3 GLN A 58 ILE A 74 1 17 HELIX 4 AA4 ILE A 74 LEU A 79 1 6 HELIX 5 AA5 HIS A 92 ASN A 119 1 28 HELIX 6 AA6 ARG A 121 SER A 133 1 13 HELIX 7 AA7 SER A 133 ASN A 143 1 11 HELIX 8 AA8 GLY A 166 LEU A 187 1 22 HELIX 9 AA9 GLY A 192 GLU A 212 1 21 HELIX 10 AB1 ARG A 218 TRP A 243 1 26 HELIX 11 AB2 VAL A 250 GLY A 269 1 20 HELIX 12 AB3 PHE A 271 LEU A 277 1 7 HELIX 13 AB4 PHE A 279 LEU A 294 1 16 HELIX 14 AB5 SER A 327 LEU A 340 1 14 HELIX 15 AB6 THR A 362 GLY A 372 1 11 HELIX 16 AB7 HIS A 375 GLN A 400 1 26 SHEET 1 AA1 2 CYS A 42 GLY A 43 0 SHEET 2 AA1 2 ILE A 54 PRO A 55 -1 O ILE A 54 N GLY A 43 SHEET 1 AA2 2 THR A 148 ILE A 149 0 SHEET 2 AA2 2 LEU A 163 ASP A 164 -1 O LEU A 163 N ILE A 149 SHEET 1 AA3 2 ARG A 306 LEU A 307 0 SHEET 2 AA3 2 LEU A 314 GLU A 315 -1 O GLU A 315 N ARG A 306 SHEET 1 AA4 3 TYR A 318 LYS A 322 0 SHEET 2 AA4 3 GLU A 354 ASN A 359 -1 O CYS A 358 N SER A 319 SHEET 3 AA4 3 VAL A 345 GLU A 349 -1 N HIS A 346 O GLU A 357 CISPEP 1 TYR A 244 PRO A 245 0 -1.23 SITE 1 AC1 4 SER A 204 LEU A 239 TRP A 243 ARG A 377 CRYST1 103.250 103.250 239.150 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009685 0.005592 0.000000 0.00000 SCALE2 0.000000 0.011184 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004181 0.00000