PDB Short entry for 5LLK HEADER CELL ADHESION 27-JUL-16 5LLK TITLE CRYSTAL STRUCTURE OF HUMAN ALPHA-DYSTROGLYCAN COMPND MOL_ID: 1; COMPND 2 MOLECULE: DYSTROGLYCAN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 52-315; COMPND 5 SYNONYM: DYSTROPHIN-ASSOCIATED GLYCOPROTEIN 1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 ORGAN: SKELETAL MUSCLE; SOURCE 6 GENE: DAG1; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PHIS-TRX KEYWDS DYSTROGLYCAN, EXTRAELLULAR MATRIX ADHESION, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR S.COVACEUSZACH,A.CASSETTA,D.LAMBA,A.BRANCACCIO,M.BOZZI,F.SCIANDRA, AUTHOR 2 M.G.BIGOTTI,P.V.KONAREV REVDAT 2 16-AUG-17 5LLK 1 JRNL REVDAT 1 12-JUL-17 5LLK 0 JRNL AUTH S.COVACEUSZACH,M.BOZZI,M.G.BIGOTTI,F.SCIANDRA,P.V.KONAREV, JRNL AUTH 2 A.BRANCACCIO,A.CASSETTA JRNL TITL STRUCTURAL FLEXIBILITY OF HUMAN ALPHA-DYSTROGLYCAN. JRNL REF FEBS OPEN BIO V. 7 1064 2017 JRNL REFN ESSN 2211-5463 JRNL PMID 28781947 JRNL DOI 10.1002/2211-5463.12259 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_2328: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.76 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.930 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 25153 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1258 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.7670 - 3.7430 1.00 2680 141 0.1327 0.1567 REMARK 3 2 3.7430 - 2.9714 1.00 2698 142 0.1535 0.1787 REMARK 3 3 2.9714 - 2.5959 1.00 2679 142 0.1766 0.2297 REMARK 3 4 2.5959 - 2.3586 0.99 2673 140 0.1771 0.2188 REMARK 3 5 2.3586 - 2.1896 1.00 2672 141 0.1706 0.1953 REMARK 3 6 2.1896 - 2.0605 1.00 2681 140 0.1838 0.1927 REMARK 3 7 2.0605 - 1.9573 0.99 2667 140 0.2015 0.2777 REMARK 3 8 1.9573 - 1.8721 0.98 2622 138 0.2487 0.2984 REMARK 3 9 1.8721 - 1.8001 0.94 2523 134 0.3701 0.3645 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.210 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 1747 REMARK 3 ANGLE : 1.012 2377 REMARK 3 CHIRALITY : 0.063 277 REMARK 3 PLANARITY : 0.007 305 REMARK 3 DIHEDRAL : 17.899 1051 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 61 THROUGH 115 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.9156 -13.9682 38.0541 REMARK 3 T TENSOR REMARK 3 T11: 0.4999 T22: 0.4143 REMARK 3 T33: 0.4416 T12: -0.0777 REMARK 3 T13: -0.0429 T23: 0.0322 REMARK 3 L TENSOR REMARK 3 L11: 1.4511 L22: 1.2059 REMARK 3 L33: 1.6474 L12: 0.2773 REMARK 3 L13: 0.4354 L23: 0.1272 REMARK 3 S TENSOR REMARK 3 S11: -0.0096 S12: -0.0661 S13: -0.3679 REMARK 3 S21: -0.0374 S22: -0.1813 S23: -0.2286 REMARK 3 S31: 0.4306 S32: 0.2714 S33: 0.0002 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 116 THROUGH 143 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.1584 -11.4161 39.4008 REMARK 3 T TENSOR REMARK 3 T11: 0.3880 T22: 0.3016 REMARK 3 T33: 0.3600 T12: -0.0462 REMARK 3 T13: -0.0549 T23: -0.0126 REMARK 3 L TENSOR REMARK 3 L11: 0.9656 L22: 0.8343 REMARK 3 L33: 1.0338 L12: 0.0302 REMARK 3 L13: -0.6708 L23: 0.4401 REMARK 3 S TENSOR REMARK 3 S11: 0.0479 S12: 0.0254 S13: -0.1810 REMARK 3 S21: -0.0593 S22: -0.2874 S23: -0.0730 REMARK 3 S31: 0.0232 S32: 0.4217 S33: 0.0010 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 144 THROUGH 203 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.8242 -3.2110 25.7148 REMARK 3 T TENSOR REMARK 3 T11: 0.4632 T22: 0.3464 REMARK 3 T33: 0.3416 T12: -0.1100 REMARK 3 T13: -0.0422 T23: 0.0105 REMARK 3 L TENSOR REMARK 3 L11: 0.4930 L22: 0.1944 REMARK 3 L33: 1.8464 L12: -0.1995 REMARK 3 L13: 0.7350 L23: -0.0038 REMARK 3 S TENSOR REMARK 3 S11: -0.0788 S12: -0.1206 S13: 0.1124 REMARK 3 S21: 0.1731 S22: -0.1001 S23: -0.0614 REMARK 3 S31: -0.5043 S32: 0.0623 S33: -0.0857 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 204 THROUGH 218 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.2663 -13.4899 17.5766 REMARK 3 T TENSOR REMARK 3 T11: 0.4038 T22: 0.2848 REMARK 3 T33: 0.3176 T12: -0.0209 REMARK 3 T13: -0.0429 T23: 0.0220 REMARK 3 L TENSOR REMARK 3 L11: 0.2873 L22: 0.3885 REMARK 3 L33: 0.3125 L12: 0.1082 REMARK 3 L13: 0.1393 L23: 0.3147 REMARK 3 S TENSOR REMARK 3 S11: 0.2509 S12: -0.3606 S13: -0.0117 REMARK 3 S21: 0.4518 S22: -0.0815 S23: -0.1358 REMARK 3 S31: 0.3294 S32: -0.0942 S33: 0.0003 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 219 THROUGH 292 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.7025 -4.4332 7.6753 REMARK 3 T TENSOR REMARK 3 T11: 0.2608 T22: 0.2082 REMARK 3 T33: 0.2630 T12: -0.0018 REMARK 3 T13: -0.0087 T23: 0.0339 REMARK 3 L TENSOR REMARK 3 L11: 2.4857 L22: 2.8537 REMARK 3 L33: 3.1427 L12: 0.7024 REMARK 3 L13: 0.0660 L23: -0.6079 REMARK 3 S TENSOR REMARK 3 S11: 0.0251 S12: 0.0737 S13: 0.1230 REMARK 3 S21: -0.0823 S22: -0.0810 S23: -0.1171 REMARK 3 S31: -0.1946 S32: 0.1700 S33: -0.0001 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 293 THROUGH 304 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.5328 0.9806 7.1826 REMARK 3 T TENSOR REMARK 3 T11: 0.4063 T22: 0.2606 REMARK 3 T33: 0.3210 T12: -0.0936 REMARK 3 T13: -0.0090 T23: 0.0338 REMARK 3 L TENSOR REMARK 3 L11: 0.8071 L22: 0.4614 REMARK 3 L33: 0.3311 L12: -0.6053 REMARK 3 L13: 0.0362 L23: 0.0223 REMARK 3 S TENSOR REMARK 3 S11: 0.3030 S12: -0.2733 S13: 0.3531 REMARK 3 S21: 0.2097 S22: -0.3537 S23: -0.1587 REMARK 3 S31: -0.5696 S32: 0.2565 S33: 0.0135 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 REFINED: BULK SOLVENT + COORDINATES + TLS + ADP + OCCUPANCIES REMARK 3 REMARK 3 REFINEMENT TARGET: ML REMARK 3 REMARK 3 TLS REFINEMENT: 6 GROUPS REMARK 3 REMARK 3 OCCUPANCIES: SELECTED RESIDUES WITH LOW ELECTRON DENSITY REMARK 4 REMARK 4 5LLK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-JUL-16. REMARK 100 THE DEPOSITION ID IS D_1200000946. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JAN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.8-7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ELETTRA REMARK 200 BEAMLINE : 5.2R REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRYSTAL REMARK 200 OPTICS : PT-COATED MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25220 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 48.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.04600 REMARK 200 R SYM (I) : 0.04600 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 21.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.5 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 1.08000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.610 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1U2C REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.8 M SODIUM CITRATE, PH 7.2, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.76000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 20.64605 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 48.00333 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 35.76000 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 20.64605 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 48.00333 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 35.76000 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 20.64605 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 48.00333 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 41.29209 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 96.00667 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 41.29209 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 96.00667 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 41.29209 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 96.00667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 616 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 50 REMARK 465 SER A 51 REMARK 465 SER A 52 REMARK 465 VAL A 53 REMARK 465 LEU A 54 REMARK 465 SER A 55 REMARK 465 ASP A 56 REMARK 465 LEU A 57 REMARK 465 HIS A 58 REMARK 465 GLU A 59 REMARK 465 ALA A 60 REMARK 465 GLU A 163 REMARK 465 LEU A 164 REMARK 465 GLN A 165 REMARK 465 SER A 166 REMARK 465 VAL A 167 REMARK 465 HIS A 168 REMARK 465 THR A 169 REMARK 465 ALA A 170 REMARK 465 SER A 171 REMARK 465 PRO A 172 REMARK 465 ASP A 173 REMARK 465 PRO A 174 REMARK 465 GLY A 175 REMARK 465 GLU A 176 REMARK 465 VAL A 177 REMARK 465 VAL A 178 REMARK 465 SER A 179 REMARK 465 SER A 180 REMARK 465 PRO A 305 REMARK 465 LEU A 306 REMARK 465 PRO A 307 REMARK 465 LYS A 308 REMARK 465 ARG A 309 REMARK 465 VAL A 310 REMARK 465 ARG A 311 REMARK 465 ARG A 312 REMARK 465 GLN A 313 REMARK 465 ILE A 314 REMARK 465 HIS A 315 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 237 HZ1 LYS A 302 1.57 REMARK 500 OD1 ASP A 92 HE ARG A 137 1.57 REMARK 500 OD2 ASP A 209 O HOH A 501 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 185 -10.85 65.59 REMARK 500 ASN A 232 19.89 56.77 REMARK 500 LEU A 235 35.07 -91.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 402 DBREF 5LLK A 52 315 UNP Q14118 DAG1_HUMAN 52 315 SEQADV 5LLK GLY A 50 UNP Q14118 EXPRESSION TAG SEQADV 5LLK SER A 51 UNP Q14118 EXPRESSION TAG SEQADV 5LLK HIS A 168 UNP Q14118 ARG 168 ENGINEERED MUTATION SEQRES 1 A 266 GLY SER SER VAL LEU SER ASP LEU HIS GLU ALA VAL PRO SEQRES 2 A 266 THR VAL VAL GLY ILE PRO ASP GLY THR ALA VAL VAL GLY SEQRES 3 A 266 ARG SER PHE ARG VAL THR ILE PRO THR ASP LEU ILE ALA SEQRES 4 A 266 SER SER GLY ASP ILE ILE LYS VAL SER ALA ALA GLY LYS SEQRES 5 A 266 GLU ALA LEU PRO SER TRP LEU HIS TRP ASP SER GLN SER SEQRES 6 A 266 HIS THR LEU GLU GLY LEU PRO LEU ASP THR ASP LYS GLY SEQRES 7 A 266 VAL HIS TYR ILE SER VAL SER ALA THR ARG LEU GLY ALA SEQRES 8 A 266 ASN GLY SER HIS ILE PRO GLN THR SER SER VAL PHE SER SEQRES 9 A 266 ILE GLU VAL TYR PRO GLU ASP HIS SER GLU LEU GLN SER SEQRES 10 A 266 VAL HIS THR ALA SER PRO ASP PRO GLY GLU VAL VAL SER SEQRES 11 A 266 SER ALA CYS ALA ALA ASP GLU PRO VAL THR VAL LEU THR SEQRES 12 A 266 VAL ILE LEU ASP ALA ASP LEU THR LYS MET THR PRO LYS SEQRES 13 A 266 GLN ARG ILE ASP LEU LEU HIS ARG MET ARG SER PHE SER SEQRES 14 A 266 GLU VAL GLU LEU HIS ASN MET LYS LEU VAL PRO VAL VAL SEQRES 15 A 266 ASN ASN ARG LEU PHE ASP MET SER ALA PHE MET ALA GLY SEQRES 16 A 266 PRO GLY ASN ALA LYS LYS VAL VAL GLU ASN GLY ALA LEU SEQRES 17 A 266 LEU SER TRP LYS LEU GLY CYS SER LEU ASN GLN ASN SER SEQRES 18 A 266 VAL PRO ASP ILE HIS GLY VAL GLU ALA PRO ALA ARG GLU SEQRES 19 A 266 GLY ALA MET SER ALA GLN LEU GLY TYR PRO VAL VAL GLY SEQRES 20 A 266 TRP HIS ILE ALA ASN LYS LYS PRO PRO LEU PRO LYS ARG SEQRES 21 A 266 VAL ARG ARG GLN ILE HIS HET EDO A 401 10 HET EDO A 402 10 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 EDO 2(C2 H6 O2) FORMUL 4 HOH *129(H2 O) HELIX 1 AA1 PRO A 83 ALA A 88 1 6 HELIX 2 AA2 LEU A 122 LYS A 126 5 5 HELIX 3 AA3 PRO A 158 SER A 162 5 5 HELIX 4 AA4 ASP A 198 MET A 202 5 5 HELIX 5 AA5 THR A 203 GLU A 219 1 17 HELIX 6 AA6 GLU A 221 HIS A 223 5 3 HELIX 7 AA7 ILE A 274 GLY A 284 1 11 HELIX 8 AA8 GLY A 284 GLY A 291 1 8 SHEET 1 AA1 4 GLY A 70 VAL A 73 0 SHEET 2 AA1 4 HIS A 144 TYR A 157 1 O TYR A 157 N ALA A 72 SHEET 3 AA1 4 GLY A 127 LEU A 138 -1 N ILE A 131 O PHE A 152 SHEET 4 AA1 4 ILE A 93 ALA A 98 -1 N ILE A 93 O THR A 136 SHEET 1 AA2 3 PHE A 78 THR A 81 0 SHEET 2 AA2 3 THR A 116 GLY A 119 -1 O LEU A 117 N VAL A 80 SHEET 3 AA2 3 LEU A 108 ASP A 111 -1 N ASP A 111 O THR A 116 SHEET 1 AA3 5 MET A 225 PRO A 229 0 SHEET 2 AA3 5 ALA A 256 CYS A 264 -1 O LEU A 257 N VAL A 228 SHEET 3 AA3 5 VAL A 188 LEU A 195 -1 N LEU A 195 O ALA A 256 SHEET 4 AA3 5 VAL A 294 LYS A 302 -1 O LYS A 302 N VAL A 188 SHEET 5 AA3 5 MET A 242 PRO A 245 -1 N MET A 242 O ILE A 299 SSBOND 1 CYS A 182 CYS A 264 1555 1555 2.05 SITE 1 AC1 5 ASN A 247 ALA A 285 GLN A 289 HOH A 518 SITE 2 AC1 5 HOH A 528 SITE 1 AC2 5 PHE A 217 SER A 218 TRP A 260 LEU A 262 SITE 2 AC2 5 ASP A 273 CRYST1 71.520 71.520 144.010 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013982 0.008073 0.000000 0.00000 SCALE2 0.000000 0.016145 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006944 0.00000