PDB Short entry for 5LQB HEADER CYTOKINE 16-AUG-16 5LQB TITLE COMPLEX STRUCTURE OF HUMAN IL2 MUTANT, PROLEUKIN, WITH FAB FRAGMENT OF TITLE 2 NARA1 ANTIBODY COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTERLEUKIN-2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: IL-2,T-CELL GROWTH FACTOR,TCGF; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: ANTI-HIL2 FAB FRAGMENT HEAVY CHAIN; COMPND 8 CHAIN: H; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: ANTI-HIL2 FAB FRAGMENT LIGHT CHAIN; COMPND 11 CHAIN: L SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 9 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 10 ORGANISM_TAXID: 10090; SOURCE 11 MOL_ID: 3; SOURCE 12 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 13 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 14 ORGANISM_TAXID: 10090 KEYWDS IL2, PROLEUKIN, NARA1, ANTI-IL2, CYTOKINE EXPDTA X-RAY DIFFRACTION AUTHOR C.ZOU,E.WIRTH REVDAT 2 10-JAN-24 5LQB 1 REMARK REVDAT 1 14-DEC-16 5LQB 0 JRNL AUTH N.ARENAS-RAMIREZ,C.ZOU,S.POPP,D.ZINGG,B.BRANNETTI,E.WIRTH, JRNL AUTH 2 T.CALZASCIA,J.KOVARIK,L.SOMMER,G.ZENKE,J.WOYTSCHAK, JRNL AUTH 3 C.H.REGNIER,A.KATOPODIS,O.BOYMAN JRNL TITL IMPROVED CANCER IMMUNOTHERAPY BY A CD25-MIMOBODY CONFERRING JRNL TITL 2 SELECTIVITY TO HUMAN INTERLEUKIN-2. JRNL REF SCI TRANSL MED V. 8 RA166 2016 JRNL REFN ESSN 1946-6242 JRNL PMID 27903862 JRNL DOI 10.1126/SCITRANSLMED.AAG3187 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0155 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 58.74 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 84.9 REMARK 3 NUMBER OF REFLECTIONS : 37450 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.291 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1972 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3139 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.99 REMARK 3 BIN R VALUE (WORKING SET) : 0.2530 REMARK 3 BIN FREE R VALUE SET COUNT : 166 REMARK 3 BIN FREE R VALUE : 0.4020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4328 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 494 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.07000 REMARK 3 B22 (A**2) : 0.67000 REMARK 3 B33 (A**2) : -0.35000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.46000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.219 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.205 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 17.501 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.915 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4442 ; 0.023 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 4071 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6046 ; 2.084 ; 1.949 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9417 ; 1.162 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 563 ; 7.660 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 181 ;37.328 ;25.138 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 720 ;18.272 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;19.900 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 693 ; 0.133 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5020 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 981 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2258 ; 7.638 ; 4.065 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2257 ; 7.638 ; 4.064 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2819 ; 9.128 ; 6.103 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2820 ; 9.126 ; 6.106 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2184 ; 8.295 ; 4.263 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2182 ; 8.267 ; 4.255 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3227 ; 9.312 ; 6.258 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5151 ;13.276 ;51.366 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5030 ;12.065 ;50.110 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 8513 ; 4.011 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 224 ;81.658 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 8682 ;39.003 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5LQB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-AUG-16. REMARK 100 THE DEPOSITION ID IS D_1200001194. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-FEB-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39422 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 58.740 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 84.8 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06600 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.22 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.39400 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.590 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3INK, 3TT1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG3350 0.2M SODIUM NITRATE, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 100.87850 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 18.11650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 100.87850 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 18.11650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 288 LIES ON A SPECIAL POSITION. REMARK 375 HOH H 503 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 22 REMARK 465 THR A 23 REMARK 465 SER A 24 REMARK 465 SER A 25 REMARK 465 PRO H 220 REMARK 465 ARG H 221 REMARK 465 GLY H 222 REMARK 465 PRO H 223 REMARK 465 THR H 224 REMARK 465 CYS L 218 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 69 CG CD CE NZ REMARK 470 ARG A 103 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 120 CG CD OE1 OE2 REMARK 470 LYS H 65 CE NZ REMARK 470 LYS H 123 CG CD CE NZ REMARK 470 LYS H 213 CG CD CE NZ REMARK 470 GLU L 84 CG CD OE1 OE2 REMARK 470 LYS L 203 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 240 O HOH A 296 2.12 REMARK 500 OG SER H 121 O HOH H 301 2.15 REMARK 500 O HOH A 211 O HOH A 262 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH H 508 O HOH H 508 2554 1.49 REMARK 500 O HOH H 518 O HOH H 518 2554 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 80 CD GLU A 80 OE1 0.089 REMARK 500 GLU H 35 CD GLU H 35 OE2 0.078 REMARK 500 TYR H 94 CG TYR H 94 CD1 0.085 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 66 CG - SD - CE ANGL. DEV. = -11.6 DEGREES REMARK 500 ASP H 109 CB - CG - OD1 ANGL. DEV. = 7.4 DEGREES REMARK 500 CYS L 92 CA - CB - SG ANGL. DEV. = 7.7 DEGREES REMARK 500 ASP L 98 CB - CG - OD1 ANGL. DEV. = 6.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 49 46.83 -86.19 REMARK 500 GLN A 94 -85.22 44.01 REMARK 500 SER A 95 129.08 67.28 REMARK 500 SER A 119 -45.42 57.29 REMARK 500 GLU A 120 165.67 -38.29 REMARK 500 THR A 121 -50.26 64.59 REMARK 500 SER H 77 51.61 36.88 REMARK 500 ALA H 92 164.66 179.67 REMARK 500 ALA H 106 105.96 -163.79 REMARK 500 ASP H 138 51.95 -99.49 REMARK 500 SER H 142 -78.17 81.39 REMARK 500 ASP H 181 17.33 57.15 REMARK 500 ALA H 209 -6.68 -52.84 REMARK 500 SER H 210 -51.00 -152.21 REMARK 500 ALA L 55 -37.84 68.79 REMARK 500 ALA L 88 176.79 176.31 REMARK 500 GLN L 128 -63.47 95.04 REMARK 500 ASP L 155 44.32 32.22 REMARK 500 LYS L 173 -19.92 156.84 REMARK 500 ASN L 216 34.52 -87.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 93 GLN A 94 142.48 REMARK 500 GLY A 118 SER A 119 -147.88 REMARK 500 SER H 210 SER H 211 -147.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 305 DISTANCE = 5.98 ANGSTROMS REMARK 525 HOH A 306 DISTANCE = 6.13 ANGSTROMS REMARK 525 HOH A 307 DISTANCE = 6.20 ANGSTROMS REMARK 525 HOH A 308 DISTANCE = 6.84 ANGSTROMS REMARK 525 HOH H 521 DISTANCE = 6.69 ANGSTROMS REMARK 525 HOH H 522 DISTANCE = 7.17 ANGSTROMS REMARK 525 HOH H 523 DISTANCE = 7.25 ANGSTROMS REMARK 525 HOH H 524 DISTANCE = 10.03 ANGSTROMS REMARK 525 HOH L 459 DISTANCE = 5.95 ANGSTROMS REMARK 525 HOH L 460 DISTANCE = 6.16 ANGSTROMS REMARK 525 HOH L 461 DISTANCE = 10.76 ANGSTROMS REMARK 525 HOH L 462 DISTANCE = 11.75 ANGSTROMS DBREF 5LQB A 22 153 UNP P60568 IL2_HUMAN 22 153 DBREF 5LQB H 1 224 PDB 5LQB 5LQB 1 224 DBREF 5LQB L 1 218 PDB 5LQB 5LQB 1 218 SEQADV 5LQB SER A 145 UNP P60568 CYS 145 ENGINEERED MUTATION SEQRES 1 A 132 PRO THR SER SER SER THR LYS LYS THR GLN LEU GLN LEU SEQRES 2 A 132 GLU HIS LEU LEU LEU ASP LEU GLN MET ILE LEU ASN GLY SEQRES 3 A 132 ILE ASN ASN TYR LYS ASN PRO LYS LEU THR ARG MET LEU SEQRES 4 A 132 THR PHE LYS PHE TYR MET PRO LYS LYS ALA THR GLU LEU SEQRES 5 A 132 LYS HIS LEU GLN CYS LEU GLU GLU GLU LEU LYS PRO LEU SEQRES 6 A 132 GLU GLU VAL LEU ASN LEU ALA GLN SER LYS ASN PHE HIS SEQRES 7 A 132 LEU ARG PRO ARG ASP LEU ILE SER ASN ILE ASN VAL ILE SEQRES 8 A 132 VAL LEU GLU LEU LYS GLY SER GLU THR THR PHE MET CYS SEQRES 9 A 132 GLU TYR ALA ASP GLU THR ALA THR ILE VAL GLU PHE LEU SEQRES 10 A 132 ASN ARG TRP ILE THR PHE SER GLN SER ILE ILE SER THR SEQRES 11 A 132 LEU THR SEQRES 1 H 224 GLN VAL GLN LEU GLN GLN SER GLY ALA GLU LEU VAL ARG SEQRES 2 H 224 PRO GLY THR SER VAL LYS VAL SER CYS LYS ALA SER GLY SEQRES 3 H 224 TYR ALA PHE THR ASN TYR LEU ILE GLU TRP VAL LYS GLN SEQRES 4 H 224 ARG PRO GLY GLN GLY LEU GLU TRP ILE GLY VAL ILE ASN SEQRES 5 H 224 PRO GLY SER GLY GLY THR ASN TYR ASN GLU LYS PHE LYS SEQRES 6 H 224 GLY LYS ALA THR LEU THR ALA ASP LYS SER SER SER THR SEQRES 7 H 224 ALA TYR MET GLN LEU SER SER LEU THR SER ASP ASP SER SEQRES 8 H 224 ALA VAL TYR PHE CYS ALA ARG TRP ARG GLY ASP GLY TYR SEQRES 9 H 224 TYR ALA TYR PHE ASP VAL TRP GLY ALA GLY THR THR VAL SEQRES 10 H 224 THR VAL SER SER ALA LYS THR THR ALA PRO SER VAL TYR SEQRES 11 H 224 PRO LEU ALA PRO VAL CYS GLY ASP THR THR GLY SER SER SEQRES 12 H 224 VAL THR LEU GLY CYS LEU VAL LYS GLY TYR PHE PRO GLU SEQRES 13 H 224 PRO VAL THR LEU THR TRP ASN SER GLY SER LEU SER SER SEQRES 14 H 224 GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER ASP LEU SEQRES 15 H 224 TYR THR LEU SER SER SER VAL THR VAL THR SER SER THR SEQRES 16 H 224 TRP PRO SER GLN SER ILE THR CYS ASN VAL ALA HIS PRO SEQRES 17 H 224 ALA SER SER THR LYS VAL ASP LYS LYS ILE GLU PRO ARG SEQRES 18 H 224 GLY PRO THR SEQRES 1 L 218 ASP ILE VAL LEU THR GLN SER PRO ALA SER LEU ALA VAL SEQRES 2 L 218 SER LEU GLY GLN ARG ALA THR ILE SER CYS LYS ALA SER SEQRES 3 L 218 GLN SER VAL ASP TYR ASP GLY ASP SER TYR MET ASN TRP SEQRES 4 L 218 TYR GLN GLN LYS PRO GLY GLN PRO PRO LYS LEU LEU ILE SEQRES 5 L 218 TYR ALA ALA SER ASN LEU GLU SER GLY ILE PRO ALA ARG SEQRES 6 L 218 PHE SER GLY SER GLY SER GLY THR ASP PHE THR LEU ASN SEQRES 7 L 218 ILE HIS PRO VAL GLU GLU GLU ASP ALA ALA THR TYR TYR SEQRES 8 L 218 CYS GLN GLN SER ASN GLU ASP PRO TYR THR PHE GLY GLY SEQRES 9 L 218 GLY THR LYS LEU GLU ILE LYS ARG ALA ASP ALA ALA PRO SEQRES 10 L 218 THR VAL SER ILE PHE PRO PRO SER SER GLU GLN LEU THR SEQRES 11 L 218 SER GLY GLY ALA SER VAL VAL CYS PHE LEU ASN ASN PHE SEQRES 12 L 218 TYR PRO LYS ASP ILE ASN VAL LYS TRP LYS ILE ASP GLY SEQRES 13 L 218 SER GLU ARG GLN ASN GLY VAL LEU ASN SER TRP THR ASP SEQRES 14 L 218 GLN ASP SER LYS ASP SER THR TYR SER MET SER SER THR SEQRES 15 L 218 LEU THR LEU THR LYS ASP GLU TYR GLU ARG HIS ASN SER SEQRES 16 L 218 TYR THR CYS GLU ALA THR HIS LYS THR SER THR SER PRO SEQRES 17 L 218 ILE VAL LYS SER PHE ASN ARG ASN GLU CYS FORMUL 4 HOH *494(H2 O) HELIX 1 AA1 THR A 27 ASN A 49 1 23 HELIX 2 AA2 LYS A 55 LEU A 60 1 6 HELIX 3 AA3 GLU A 72 LYS A 74 5 3 HELIX 4 AA4 HIS A 75 LEU A 92 1 18 HELIX 5 AA5 ARG A 101 GLY A 118 1 18 HELIX 6 AA6 SER A 119 PHE A 123 5 5 HELIX 7 AA7 THR A 133 LEU A 152 1 20 HELIX 8 AA8 ALA H 28 TYR H 32 5 5 HELIX 9 AA9 GLU H 62 LYS H 65 5 4 HELIX 10 AB1 LYS H 74 SER H 76 5 3 HELIX 11 AB2 THR H 87 SER H 91 5 5 HELIX 12 AB3 SER H 164 SER H 166 5 3 HELIX 13 AB4 GLU L 83 ALA L 87 5 5 HELIX 14 AB5 SER L 125 THR L 130 1 6 HELIX 15 AB6 LYS L 187 ARG L 192 1 6 SHEET 1 AA1 4 GLN H 3 GLN H 6 0 SHEET 2 AA1 4 VAL H 18 SER H 25 -1 O LYS H 23 N GLN H 5 SHEET 3 AA1 4 THR H 78 LEU H 83 -1 O ALA H 79 N CYS H 22 SHEET 4 AA1 4 ALA H 68 ASP H 73 -1 N THR H 69 O GLN H 82 SHEET 1 AA2 6 GLU H 10 VAL H 12 0 SHEET 2 AA2 6 THR H 115 VAL H 119 1 O THR H 118 N GLU H 10 SHEET 3 AA2 6 ALA H 92 ARG H 100 -1 N ALA H 92 O VAL H 117 SHEET 4 AA2 6 ILE H 34 ARG H 40 -1 N VAL H 37 O PHE H 95 SHEET 5 AA2 6 GLY H 44 ILE H 51 -1 O ILE H 48 N TRP H 36 SHEET 6 AA2 6 THR H 58 TYR H 60 -1 O ASN H 59 N VAL H 50 SHEET 1 AA3 4 GLU H 10 VAL H 12 0 SHEET 2 AA3 4 THR H 115 VAL H 119 1 O THR H 118 N GLU H 10 SHEET 3 AA3 4 ALA H 92 ARG H 100 -1 N ALA H 92 O VAL H 117 SHEET 4 AA3 4 TYR H 107 TRP H 111 -1 O VAL H 110 N ARG H 98 SHEET 1 AA4 4 SER H 128 LEU H 132 0 SHEET 2 AA4 4 SER H 143 TYR H 153 -1 O LEU H 149 N TYR H 130 SHEET 3 AA4 4 LEU H 182 THR H 192 -1 O TYR H 183 N TYR H 153 SHEET 4 AA4 4 VAL H 171 THR H 173 -1 N HIS H 172 O SER H 188 SHEET 1 AA5 4 SER H 128 LEU H 132 0 SHEET 2 AA5 4 SER H 143 TYR H 153 -1 O LEU H 149 N TYR H 130 SHEET 3 AA5 4 LEU H 182 THR H 192 -1 O TYR H 183 N TYR H 153 SHEET 4 AA5 4 VAL H 177 GLN H 179 -1 N GLN H 179 O LEU H 182 SHEET 1 AA6 3 THR H 159 TRP H 162 0 SHEET 2 AA6 3 THR H 202 HIS H 207 -1 O ALA H 206 N THR H 159 SHEET 3 AA6 3 SER H 211 LYS H 216 -1 O ASP H 215 N CYS H 203 SHEET 1 AA7 4 LEU L 4 SER L 7 0 SHEET 2 AA7 4 ALA L 19 ALA L 25 -1 O LYS L 24 N THR L 5 SHEET 3 AA7 4 ASP L 74 ILE L 79 -1 O LEU L 77 N ILE L 21 SHEET 4 AA7 4 PHE L 66 SER L 71 -1 N SER L 67 O ASN L 78 SHEET 1 AA8 6 SER L 10 SER L 14 0 SHEET 2 AA8 6 THR L 106 LYS L 111 1 O GLU L 109 N LEU L 11 SHEET 3 AA8 6 ALA L 88 GLN L 94 -1 N ALA L 88 O LEU L 108 SHEET 4 AA8 6 MET L 37 GLN L 42 -1 N GLN L 42 O THR L 89 SHEET 5 AA8 6 LYS L 49 TYR L 53 -1 O LEU L 51 N TRP L 39 SHEET 6 AA8 6 ASN L 57 LEU L 58 -1 O ASN L 57 N TYR L 53 SHEET 1 AA9 4 SER L 10 SER L 14 0 SHEET 2 AA9 4 THR L 106 LYS L 111 1 O GLU L 109 N LEU L 11 SHEET 3 AA9 4 ALA L 88 GLN L 94 -1 N ALA L 88 O LEU L 108 SHEET 4 AA9 4 THR L 101 PHE L 102 -1 O THR L 101 N GLN L 94 SHEET 1 AB1 2 ASP L 30 TYR L 31 0 SHEET 2 AB1 2 ASP L 34 SER L 35 -1 O ASP L 34 N TYR L 31 SHEET 1 AB2 4 THR L 118 PHE L 122 0 SHEET 2 AB2 4 GLY L 133 PHE L 143 -1 O VAL L 137 N PHE L 122 SHEET 3 AB2 4 TYR L 177 THR L 186 -1 O MET L 179 N LEU L 140 SHEET 4 AB2 4 VAL L 163 TRP L 167 -1 N SER L 166 O SER L 180 SHEET 1 AB3 4 SER L 157 ARG L 159 0 SHEET 2 AB3 4 ILE L 148 ILE L 154 -1 N TRP L 152 O ARG L 159 SHEET 3 AB3 4 SER L 195 HIS L 202 -1 O GLU L 199 N LYS L 151 SHEET 4 AB3 4 SER L 205 ASN L 214 -1 O ILE L 209 N ALA L 200 SSBOND 1 CYS A 78 CYS A 125 1555 1555 2.04 SSBOND 2 CYS H 22 CYS H 96 1555 1555 1.96 SSBOND 3 CYS H 148 CYS H 203 1555 1555 2.02 SSBOND 4 CYS L 23 CYS L 92 1555 1555 2.13 SSBOND 5 CYS L 138 CYS L 198 1555 1555 2.00 CISPEP 1 PHE H 154 PRO H 155 0 -9.03 CISPEP 2 GLU H 156 PRO H 157 0 -0.09 CISPEP 3 TRP H 196 PRO H 197 0 9.01 CISPEP 4 SER L 7 PRO L 8 0 -7.20 CISPEP 5 HIS L 80 PRO L 81 0 2.45 CISPEP 6 ASP L 98 PRO L 99 0 -9.86 CISPEP 7 TYR L 144 PRO L 145 0 6.73 CRYST1 201.757 36.233 88.707 90.00 102.93 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004956 0.000000 0.001138 0.00000 SCALE2 0.000000 0.027599 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011566 0.00000