PDB Short entry for 5LV6 HEADER TRANSFERASE 12-SEP-16 5LV6 TITLE N-TERMINAL MOTIF DIMERIZATION OF EGFR TRANSMEMBRANE DOMAIN IN BICELLAR TITLE 2 ENVIRONMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: EPIDERMAL GROWTH FACTOR RECEPTOR; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PROTO-ONCOGENE C-ERBB-1,RECEPTOR TYROSINE-PROTEIN KINASE COMPND 5 ERBB-1; COMPND 6 EC: 2.7.10.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EGFR, ERBB, ERBB1, HER1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS EPIDERMAL GROWTH FACTOR RECEPTOR, BICELLES, ACTIVATION MECHANISM, KEYWDS 2 TRANSFERASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR P.BRAGIN,E.BOCHAROV,K.MINEEV,O.BOCHAROVA,A.ARSENIEV REVDAT 2 14-JUN-23 5LV6 1 REMARK REVDAT 1 05-APR-17 5LV6 0 JRNL AUTH E.V.BOCHAROV,P.E.BRAGIN,K.V.PAVLOV,O.V.BOCHAROVA,K.S.MINEEV, JRNL AUTH 2 A.A.POLYANSKY,P.E.VOLYNSKY,R.G.EFREMOV,A.S.ARSENIEV JRNL TITL THE CONFORMATION OF THE EPIDERMAL GROWTH FACTOR RECEPTOR JRNL TITL 2 TRANSMEMBRANE DOMAIN DIMER DYNAMICALLY ADAPTS TO THE LOCAL JRNL TITL 3 MEMBRANE ENVIRONMENT. JRNL REF BIOCHEMISTRY V. 56 1697 2017 JRNL REFN ISSN 1520-4995 JRNL PMID 28291355 JRNL DOI 10.1021/ACS.BIOCHEM.6B01085 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 3.97 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5LV6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-SEP-16. REMARK 100 THE DEPOSITION ID IS D_1200001136. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 313 REMARK 210 PH : 5.8 REMARK 210 IONIC STRENGTH : 50 REMARK 210 PRESSURE : AMBIENT ATM REMARK 210 SAMPLE CONTENTS : 0.01 % SODIUM AZIDE, 50 MM REMARK 210 PHOSPHATE BUFFER PH 5.8, 5 MM REMARK 210 TCEP, 30 MM U-2H DHPC, 10 MM U- REMARK 210 2H DMPC, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-13C NOESY WITH REMARK 210 HETERONUCLEAR FILTRATION; 2D 1H- REMARK 210 13C HSQC; 2D 1H-15N HSQC; 3D REMARK 210 HNCO; 3D HNCA; 3D HN(CO)CA; 3D REMARK 210 1H-15N NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 3.97, CARA REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 641 78.63 -69.75 REMARK 500 1 PRO A 644 -171.08 -69.77 REMARK 500 1 PRO B 641 79.00 -69.72 REMARK 500 1 PRO B 644 -171.19 -69.82 REMARK 500 2 PRO A 637 -175.31 -69.70 REMARK 500 2 PRO A 644 -170.78 -69.78 REMARK 500 2 PRO B 637 -174.98 -69.76 REMARK 500 2 PRO B 644 -170.81 -69.72 REMARK 500 3 PRO A 641 83.23 -69.69 REMARK 500 3 PRO A 644 -171.44 -69.75 REMARK 500 3 HIS A 672 172.44 -55.84 REMARK 500 3 PRO B 641 85.16 -69.77 REMARK 500 3 PRO B 644 -173.59 -69.74 REMARK 500 3 HIS B 672 172.41 -55.25 REMARK 500 6 PRO A 637 -178.70 -69.74 REMARK 500 6 PRO A 644 -171.09 -69.75 REMARK 500 6 ILE A 673 132.84 179.00 REMARK 500 6 PRO B 637 -178.97 -69.79 REMARK 500 6 PRO B 644 -171.82 -69.80 REMARK 500 6 ILE B 673 132.92 179.03 REMARK 500 7 PRO A 637 -178.12 -69.85 REMARK 500 7 PRO A 644 -171.00 -69.76 REMARK 500 7 PRO B 637 -178.64 -69.70 REMARK 500 7 PRO B 644 -170.97 -69.69 REMARK 500 8 PRO A 641 79.49 -69.71 REMARK 500 8 PRO B 641 79.55 -69.74 REMARK 500 9 VAL A 674 109.33 -51.82 REMARK 500 9 VAL B 674 109.03 -51.82 REMARK 500 10 PRO A 644 -170.90 -69.78 REMARK 500 10 HIS A 672 172.40 -55.95 REMARK 500 10 PRO B 644 -171.09 -69.75 REMARK 500 10 HIS B 672 172.43 -55.36 REMARK 500 11 PRO A 641 97.70 -69.75 REMARK 500 11 PRO A 644 -170.86 -69.81 REMARK 500 11 PRO B 641 97.81 -69.79 REMARK 500 11 PRO B 644 -170.82 -69.73 REMARK 500 12 ASN A 639 -177.82 -65.05 REMARK 500 12 PRO A 641 -170.70 -69.81 REMARK 500 12 PRO A 644 -170.82 -69.77 REMARK 500 12 ASN B 639 -178.03 -65.25 REMARK 500 12 PRO B 641 -170.89 -69.69 REMARK 500 12 PRO B 644 -170.92 -69.78 REMARK 500 13 PRO A 637 -171.05 -69.83 REMARK 500 13 PRO A 641 84.76 -69.80 REMARK 500 13 PRO B 637 -171.46 -69.68 REMARK 500 13 PRO B 641 85.27 -69.77 REMARK 500 14 PRO A 644 -176.26 -69.73 REMARK 500 14 ASN B 639 -179.50 -67.67 REMARK 500 14 PRO B 644 -178.48 -69.71 REMARK 500 15 PRO A 637 -179.67 -69.71 REMARK 500 REMARK 500 THIS ENTRY HAS 84 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34040 RELATED DB: BMRB REMARK 900 N-TERMINAL MOTIF DIMERIZATION OF EGFR TRANSMEMBRANE DOMAIN IN REMARK 900 BICELLAR ENVIRONMENT DBREF 5LV6 A 634 677 UNP P00533 EGFR_HUMAN 634 677 DBREF 5LV6 B 634 677 UNP P00533 EGFR_HUMAN 634 677 SEQRES 1 A 44 GLU GLY CYS PRO THR ASN GLY PRO LYS ILE PRO SER ILE SEQRES 2 A 44 ALA THR GLY MET VAL GLY ALA LEU LEU LEU LEU LEU VAL SEQRES 3 A 44 VAL ALA LEU GLY ILE GLY LEU PHE MET ARG ARG ARG HIS SEQRES 4 A 44 ILE VAL ARG LYS ARG SEQRES 1 B 44 GLU GLY CYS PRO THR ASN GLY PRO LYS ILE PRO SER ILE SEQRES 2 B 44 ALA THR GLY MET VAL GLY ALA LEU LEU LEU LEU LEU VAL SEQRES 3 B 44 VAL ALA LEU GLY ILE GLY LEU PHE MET ARG ARG ARG HIS SEQRES 4 B 44 ILE VAL ARG LYS ARG HELIX 1 AA1 ALA A 647 ARG A 671 1 25 HELIX 2 AA2 ALA B 647 ARG B 671 1 25 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000