PDB Short entry for 5LWC HEADER ANTIMICROBIAL PROTEIN 15-SEP-16 5LWC TITLE NMR SOLUTION STRUCTURE OF BACTERIOCIN BACSP222 FROM STAPHYLOCOCCUS TITLE 2 PSEUDINTERMEDIUS 222 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BACTERIOCIN BACSP222; COMPND 3 CHAIN: A; COMPND 4 OTHER_DETAILS: THE FIRST METHIONINE IS N-FORMYLATED SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS PSEUDINTERMEDIUS; SOURCE 3 ORGANISM_TAXID: 283734 KEYWDS BACTERIOCIN, STRUCTURE FROM MOLMOL, ANTIMICROBIAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.E.NOWAKOWSKI,A.O.EJCHART,L.JAREMKO,B.WLADYKA,P.MAK REVDAT 3 14-JUN-23 5LWC 1 REMARK REVDAT 2 08-MAY-19 5LWC 1 JRNL REMARK REVDAT 1 25-OCT-17 5LWC 0 JRNL AUTH M.NOWAKOWSKI,L.JAREMKO,B.WLADYKA,G.DUBIN,A.EJCHART,P.MAK JRNL TITL SPATIAL ATTRIBUTES OF THE FOUR-HELIX BUNDLE GROUP OF JRNL TITL 2 BACTERIOCINS - THE HIGH-RESOLUTION STRUCTURE OF BACSP222 IN JRNL TITL 3 SOLUTION. JRNL REF INT.J.BIOL.MACROMOL. V. 107 2715 2018 JRNL REFN ISSN 0141-8130 JRNL PMID 29107139 JRNL DOI 10.1016/J.IJBIOMAC.2017.10.158 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XPLOR-NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5LWC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-SEP-16. REMARK 100 THE DEPOSITION ID IS D_1200001338. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 5 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-99% 13C; U-99% 15N] REMARK 210 BACSP222, 100 MM [U-100% 2H] REMARK 210 SODIUM ACETATE, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 3D HNCO; 3D C(CO)NH; REMARK 210 3D CBCA(CO)NH; 3D HN(CO)CA; 3D REMARK 210 HNCA; 3D HNCACB; 3D HBHA(CO)NH; REMARK 210 3D HCCH-TOCSY; 3D 15N-EDITED REMARK 210 NOESY; 3D 13C-EDITED NOESY REMARK 210 (AROMATIC; 13C-EDITED NOESY REMARK 210 (ALIPHATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : UNIFORM NMR SYSTEM REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY, QMDD 2.0, NMRPIPE, CYANA REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 250 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 3930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 34 -175.19 -50.90 REMARK 500 2 ALA A 34 179.49 -50.15 REMARK 500 8 ALA A 34 176.05 -48.18 REMARK 500 9 ALA A 34 -167.43 -56.09 REMARK 500 10 ALA A 34 177.29 -51.52 REMARK 500 11 ALA A 34 177.18 -46.58 REMARK 500 11 TRP A 49 -62.46 -169.23 REMARK 500 13 ALA A 34 -176.88 -62.76 REMARK 500 15 ALA A 34 -178.20 -50.31 REMARK 500 17 ALA A 34 -178.02 -57.28 REMARK 500 19 TRP A 49 65.57 -171.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34044 RELATED DB: BMRB REMARK 900 SOLUTION STRUCTURE OF BACTERIOCIN BACSP222 FROM STAPHYLOCOCCUS REMARK 900 PSEUDINTERMEDIUS 222 DBREF1 5LWC A 1 50 UNP A0A0P0C3P7_STAPS DBREF2 5LWC A A0A0P0C3P7 1 50 SEQRES 1 A 50 FME ALA GLY LEU LEU ARG PHE LEU LEU SER LYS GLY ARG SEQRES 2 A 50 ALA LEU TYR ASN TRP ALA LYS SER HIS VAL GLY LYS VAL SEQRES 3 A 50 TRP GLU TRP LEU LYS SER GLY ALA THR TYR GLU GLN ILE SEQRES 4 A 50 LYS GLU TRP ILE GLU ASN ALA LEU GLY TRP ARG MODRES 5LWC FME A 1 MET MODIFIED RESIDUE HET FME A 1 20 HETNAM FME N-FORMYLMETHIONINE FORMUL 1 FME C6 H11 N O3 S HELIX 1 AA1 FME A 1 GLY A 12 1 12 HELIX 2 AA2 GLY A 12 HIS A 22 1 11 HELIX 3 AA3 HIS A 22 GLY A 33 1 12 HELIX 4 AA4 THR A 35 ARG A 50 1 16 LINK C FME A 1 N ALA A 2 1555 1555 1.32 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000