PDB Short entry for 5Q0L HEADER TRANSCRIPTION 31-MAY-17 5Q0L TITLE LIGAND BINDING TO FARNESOID-X-RECEPTOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: BILE ACID RECEPTOR; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: FARNESOID X-ACTIVATED RECEPTOR,FARNESOL RECEPTOR HRR-1, COMPND 5 NUCLEAR RECEPTOR SUBFAMILY 1 GROUP H MEMBER 4,RETINOID X RECEPTOR- COMPND 6 INTERACTING PROTEIN 14,RXR-INTERACTING PROTEIN 14; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: COACTIVATOR PEPTIDE SRC-1 HD3; COMPND 10 CHAIN: B, D; COMPND 11 FRAGMENT: UNP RESIDUES 744-757; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NR1H4, BAR, FXR, HRR1, RIP14; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606 KEYWDS D3R, FXR, DOCKING, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR M.G.RUDOLPH,J.BENZ,D.BURGER,R.THOMA,A.RUF,C.JOSEPH,B.KUHN,C.SHAO, AUTHOR 2 H.YANG,S.K.BURLEY REVDAT 8 15-NOV-23 5Q0L 1 REMARK REVDAT 7 17-NOV-21 5Q0L 1 REMARK REVDAT 6 10-FEB-21 5Q0L 1 AUTHOR JRNL REVDAT 5 21-FEB-18 5Q0L 1 REMARK REVDAT 4 31-JAN-18 5Q0L 1 JRNL REVDAT 3 20-DEC-17 5Q0L 1 JRNL REVDAT 2 19-JUL-17 5Q0L 1 AUTHOR JRNL REVDAT 1 05-JUL-17 5Q0L 0 JRNL AUTH Z.GAIEB,S.LIU,S.GATHIAKA,M.CHIU,H.YANG,C.SHAO,V.A.FEHER, JRNL AUTH 2 W.P.WALTERS,B.KUHN,M.G.RUDOLPH,S.K.BURLEY,M.K.GILSON, JRNL AUTH 3 R.E.AMARO JRNL TITL D3R GRAND CHALLENGE 2: BLIND PREDICTION OF PROTEIN-LIGAND JRNL TITL 2 POSES, AFFINITY RANKINGS, AND RELATIVE BINDING FREE JRNL TITL 3 ENERGIES. JRNL REF J. COMPUT. AIDED MOL. DES. V. 32 1 2018 JRNL REFN ESSN 1573-4951 JRNL PMID 29204945 JRNL DOI 10.1007/S10822-017-0088-4 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.98 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 19946 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.110 REMARK 3 FREE R VALUE TEST SET COUNT : 1019 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.63 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2870 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2297 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2707 REMARK 3 BIN R VALUE (WORKING SET) : 0.2264 REMARK 3 BIN FREE R VALUE : 0.2827 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.68 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 163 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3953 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 66 REMARK 3 SOLVENT ATOMS : 137 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 70.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.46590 REMARK 3 B22 (A**2) : -12.33160 REMARK 3 B33 (A**2) : 7.86570 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.360 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.601 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.296 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.583 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.299 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.934 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.900 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4109 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 5551 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1491 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 118 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 566 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4109 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 528 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4858 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.05 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.33 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 21.93 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 11.5408 21.0494 6.3609 REMARK 3 T TENSOR REMARK 3 T11: -0.1581 T22: -0.2388 REMARK 3 T33: -0.1026 T12: 0.0813 REMARK 3 T13: -0.0094 T23: 0.0569 REMARK 3 L TENSOR REMARK 3 L11: 2.7141 L22: 1.9212 REMARK 3 L33: 6.3819 L12: 0.1861 REMARK 3 L13: -1.5183 L23: -0.4539 REMARK 3 S TENSOR REMARK 3 S11: -0.1503 S12: 0.0082 S13: -0.2658 REMARK 3 S21: 0.0361 S22: -0.0182 S23: -0.0197 REMARK 3 S31: 0.4725 S32: 0.0991 S33: 0.1685 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { C|* } REMARK 3 ORIGIN FOR THE GROUP (A): 19.6367 10.7433 34.4628 REMARK 3 T TENSOR REMARK 3 T11: -0.2028 T22: 0.0508 REMARK 3 T33: -0.1820 T12: 0.1185 REMARK 3 T13: 0.0335 T23: 0.0531 REMARK 3 L TENSOR REMARK 3 L11: 3.0813 L22: 2.4278 REMARK 3 L33: 2.5919 L12: -0.8041 REMARK 3 L13: 0.4699 L23: 0.4658 REMARK 3 S TENSOR REMARK 3 S11: -0.0365 S12: -0.5225 S13: -0.1624 REMARK 3 S21: 0.0431 S22: -0.0671 S23: 0.2185 REMARK 3 S31: 0.0785 S32: -0.1756 S33: 0.1036 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { D|* } REMARK 3 ORIGIN FOR THE GROUP (A): 36.8787 20.0381 41.4747 REMARK 3 T TENSOR REMARK 3 T11: 0.0655 T22: 0.0951 REMARK 3 T33: -0.1940 T12: 0.0191 REMARK 3 T13: -0.0692 T23: 0.0152 REMARK 3 L TENSOR REMARK 3 L11: 0.0575 L22: 0.0000 REMARK 3 L33: 0.8391 L12: 0.4775 REMARK 3 L13: -0.1336 L23: -0.0526 REMARK 3 S TENSOR REMARK 3 S11: -0.0018 S12: 0.0171 S13: 0.0415 REMARK 3 S21: -0.0145 S22: 0.0092 S23: -0.0247 REMARK 3 S31: -0.0468 S32: 0.0058 S33: -0.0074 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5Q0L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JUN-17. REMARK 100 THE DEPOSITION ID IS D_1001401347. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-NOV-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19946 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 38.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 1.890 REMARK 200 R MERGE (I) : 0.05250 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.1400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 1.92 REMARK 200 R MERGE FOR SHELL (I) : 0.26560 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS PH 6.5, 25% W/V PEG REMARK 280 3350, EVAPORATION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 94.48550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 94.48550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 35.92350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 41.48000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 35.92350 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 41.48000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 94.48550 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 35.92350 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 41.48000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 94.48550 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 35.92350 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 41.48000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 244 REMARK 465 SER A 245 REMARK 465 HIS A 246 REMARK 465 LYS B 744 REMARK 465 ASP B 756 REMARK 465 GLU B 757 REMARK 465 GLY C 244 REMARK 465 SER C 245 REMARK 465 HIS C 246 REMARK 465 GLN C 476 REMARK 465 LYS D 744 REMARK 465 GLU D 757 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MSE A 247 CG SE CE REMARK 470 MSE C 247 CG SE CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 345 171.53 -59.02 REMARK 500 LEU A 395 48.01 -88.13 REMARK 500 ASP A 398 35.51 -91.65 REMARK 500 ILE A 425 -60.08 -95.52 REMARK 500 PRO C 345 173.75 -59.95 REMARK 500 LEU C 395 48.97 -88.76 REMARK 500 ASP C 398 30.01 -86.01 REMARK 500 ASP C 474 100.23 51.00 REMARK 500 HIS D 746 -159.45 -73.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 9KY A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 9KY C 501 DBREF 5Q0L A 248 476 UNP Q96RI1 NR1H4_HUMAN 258 486 DBREF 5Q0L B 744 757 UNP A8K1V4 A8K1V4_HUMAN 744 757 DBREF 5Q0L C 248 476 UNP Q96RI1 NR1H4_HUMAN 258 486 DBREF 5Q0L D 744 757 UNP A8K1V4 A8K1V4_HUMAN 744 757 SEQADV 5Q0L GLY A 244 UNP Q96RI1 EXPRESSION TAG SEQADV 5Q0L SER A 245 UNP Q96RI1 EXPRESSION TAG SEQADV 5Q0L HIS A 246 UNP Q96RI1 EXPRESSION TAG SEQADV 5Q0L MSE A 247 UNP Q96RI1 EXPRESSION TAG SEQADV 5Q0L ALA A 281 UNP Q96RI1 GLU 291 CONFLICT SEQADV 5Q0L ALA A 354 UNP Q96RI1 GLU 364 CONFLICT SEQADV 5Q0L GLY C 244 UNP Q96RI1 EXPRESSION TAG SEQADV 5Q0L SER C 245 UNP Q96RI1 EXPRESSION TAG SEQADV 5Q0L HIS C 246 UNP Q96RI1 EXPRESSION TAG SEQADV 5Q0L MSE C 247 UNP Q96RI1 EXPRESSION TAG SEQADV 5Q0L ALA C 281 UNP Q96RI1 GLU 291 CONFLICT SEQADV 5Q0L ALA C 354 UNP Q96RI1 GLU 364 CONFLICT SEQRES 1 A 233 GLY SER HIS MSE GLU LEU THR PRO ASP GLN GLN THR LEU SEQRES 2 A 233 LEU HIS PHE ILE MSE ASP SER TYR ASN LYS GLN ARG MSE SEQRES 3 A 233 PRO GLN GLU ILE THR ASN LYS ILE LEU LYS GLU ALA PHE SEQRES 4 A 233 SER ALA GLU GLU ASN PHE LEU ILE LEU THR GLU MSE ALA SEQRES 5 A 233 THR ASN HIS VAL GLN VAL LEU VAL GLU PHE THR LYS LYS SEQRES 6 A 233 LEU PRO GLY PHE GLN THR LEU ASP HIS GLU ASP GLN ILE SEQRES 7 A 233 ALA LEU LEU LYS GLY SER ALA VAL GLU ALA MSE PHE LEU SEQRES 8 A 233 ARG SER ALA GLU ILE PHE ASN LYS LYS LEU PRO SER GLY SEQRES 9 A 233 HIS SER ASP LEU LEU GLU ALA ARG ILE ARG ASN SER GLY SEQRES 10 A 233 ILE SER ASP GLU TYR ILE THR PRO MSE PHE SER PHE TYR SEQRES 11 A 233 LYS SER ILE GLY GLU LEU LYS MSE THR GLN GLU GLU TYR SEQRES 12 A 233 ALA LEU LEU THR ALA ILE VAL ILE LEU SER PRO ASP ARG SEQRES 13 A 233 GLN TYR ILE LYS ASP ARG GLU ALA VAL GLU LYS LEU GLN SEQRES 14 A 233 GLU PRO LEU LEU ASP VAL LEU GLN LYS LEU CYS LYS ILE SEQRES 15 A 233 HIS GLN PRO GLU ASN PRO GLN HIS PHE ALA CYS LEU LEU SEQRES 16 A 233 GLY ARG LEU THR GLU LEU ARG THR PHE ASN HIS HIS HIS SEQRES 17 A 233 ALA GLU MSE LEU MSE SER TRP ARG VAL ASN ASP HIS LYS SEQRES 18 A 233 PHE THR PRO LEU LEU CYS GLU ILE TRP ASP VAL GLN SEQRES 1 B 14 LYS ASP HIS GLN LEU LEU ARG TYR LEU LEU ASP LYS ASP SEQRES 2 B 14 GLU SEQRES 1 C 233 GLY SER HIS MSE GLU LEU THR PRO ASP GLN GLN THR LEU SEQRES 2 C 233 LEU HIS PHE ILE MSE ASP SER TYR ASN LYS GLN ARG MSE SEQRES 3 C 233 PRO GLN GLU ILE THR ASN LYS ILE LEU LYS GLU ALA PHE SEQRES 4 C 233 SER ALA GLU GLU ASN PHE LEU ILE LEU THR GLU MSE ALA SEQRES 5 C 233 THR ASN HIS VAL GLN VAL LEU VAL GLU PHE THR LYS LYS SEQRES 6 C 233 LEU PRO GLY PHE GLN THR LEU ASP HIS GLU ASP GLN ILE SEQRES 7 C 233 ALA LEU LEU LYS GLY SER ALA VAL GLU ALA MSE PHE LEU SEQRES 8 C 233 ARG SER ALA GLU ILE PHE ASN LYS LYS LEU PRO SER GLY SEQRES 9 C 233 HIS SER ASP LEU LEU GLU ALA ARG ILE ARG ASN SER GLY SEQRES 10 C 233 ILE SER ASP GLU TYR ILE THR PRO MSE PHE SER PHE TYR SEQRES 11 C 233 LYS SER ILE GLY GLU LEU LYS MSE THR GLN GLU GLU TYR SEQRES 12 C 233 ALA LEU LEU THR ALA ILE VAL ILE LEU SER PRO ASP ARG SEQRES 13 C 233 GLN TYR ILE LYS ASP ARG GLU ALA VAL GLU LYS LEU GLN SEQRES 14 C 233 GLU PRO LEU LEU ASP VAL LEU GLN LYS LEU CYS LYS ILE SEQRES 15 C 233 HIS GLN PRO GLU ASN PRO GLN HIS PHE ALA CYS LEU LEU SEQRES 16 C 233 GLY ARG LEU THR GLU LEU ARG THR PHE ASN HIS HIS HIS SEQRES 17 C 233 ALA GLU MSE LEU MSE SER TRP ARG VAL ASN ASP HIS LYS SEQRES 18 C 233 PHE THR PRO LEU LEU CYS GLU ILE TRP ASP VAL GLN SEQRES 1 D 14 LYS ASP HIS GLN LEU LEU ARG TYR LEU LEU ASP LYS ASP SEQRES 2 D 14 GLU MODRES 5Q0L MSE A 261 MET MODIFIED RESIDUE MODRES 5Q0L MSE A 269 MET MODIFIED RESIDUE MODRES 5Q0L MSE A 294 MET MODIFIED RESIDUE MODRES 5Q0L MSE A 332 MET MODIFIED RESIDUE MODRES 5Q0L MSE A 369 MET MODIFIED RESIDUE MODRES 5Q0L MSE A 381 MET MODIFIED RESIDUE MODRES 5Q0L MSE A 454 MET MODIFIED RESIDUE MODRES 5Q0L MSE A 456 MET MODIFIED RESIDUE MODRES 5Q0L MSE C 261 MET MODIFIED RESIDUE MODRES 5Q0L MSE C 269 MET MODIFIED RESIDUE MODRES 5Q0L MSE C 294 MET MODIFIED RESIDUE MODRES 5Q0L MSE C 332 MET MODIFIED RESIDUE MODRES 5Q0L MSE C 369 MET MODIFIED RESIDUE MODRES 5Q0L MSE C 381 MET MODIFIED RESIDUE MODRES 5Q0L MSE C 454 MET MODIFIED RESIDUE MODRES 5Q0L MSE C 456 MET MODIFIED RESIDUE HET MSE A 247 5 HET MSE A 261 8 HET MSE A 269 8 HET MSE A 294 8 HET MSE A 332 8 HET MSE A 369 8 HET MSE A 381 8 HET MSE A 454 8 HET MSE A 456 8 HET MSE C 247 5 HET MSE C 261 8 HET MSE C 269 8 HET MSE C 294 8 HET MSE C 332 8 HET MSE C 369 8 HET MSE C 381 8 HET MSE C 454 8 HET MSE C 456 8 HET 9KY A 501 33 HET 9KY C 501 33 HETNAM MSE SELENOMETHIONINE HETNAM 9KY (2S)-N,2-DICYCLOHEXYL-2-{2-[4-(HYDROXYMETHYL)PHENYL]- HETNAM 2 9KY 1H-BENZIMIDAZOL-1-YL}ACETAMIDE FORMUL 1 MSE 18(C5 H11 N O2 SE) FORMUL 5 9KY 2(C28 H35 N3 O2) FORMUL 7 HOH *137(H2 O) HELIX 1 AA1 THR A 250 ASN A 265 1 16 HELIX 2 AA2 MSE A 269 GLU A 280 1 12 HELIX 3 AA3 SER A 283 LYS A 308 1 26 HELIX 4 AA4 GLY A 311 LEU A 315 5 5 HELIX 5 AA5 ASP A 316 ASN A 341 1 26 HELIX 6 AA6 GLY A 347 ASN A 358 1 12 HELIX 7 AA7 SER A 362 GLU A 378 1 17 HELIX 8 AA8 THR A 382 LEU A 395 1 14 HELIX 9 AA9 ASP A 404 GLN A 427 1 24 HELIX 10 AB1 GLN A 432 HIS A 450 1 19 HELIX 11 AB2 HIS A 450 SER A 457 1 8 HELIX 12 AB3 THR A 466 ASP A 474 1 9 HELIX 13 AB4 HIS B 746 LYS B 755 1 10 HELIX 14 AB5 THR C 250 ASN C 265 1 16 HELIX 15 AB6 MSE C 269 GLU C 280 1 12 HELIX 16 AB7 SER C 283 LYS C 308 1 26 HELIX 17 AB8 GLY C 311 LEU C 315 5 5 HELIX 18 AB9 ASP C 316 ASN C 341 1 26 HELIX 19 AC1 GLY C 347 ASN C 358 1 12 HELIX 20 AC2 SER C 362 GLU C 378 1 17 HELIX 21 AC3 THR C 382 LEU C 395 1 14 HELIX 22 AC4 ASP C 404 GLN C 427 1 24 HELIX 23 AC5 GLN C 432 HIS C 450 1 19 HELIX 24 AC6 HIS C 450 SER C 457 1 8 HELIX 25 AC7 THR C 466 ASP C 474 1 9 HELIX 26 AC8 HIS D 746 LYS D 755 1 10 SSBOND 1 CYS A 436 CYS C 436 1555 1555 2.95 LINK C MSE A 247 N GLU A 248 1555 1555 1.36 LINK C ILE A 260 N MSE A 261 1555 1555 1.35 LINK C MSE A 261 N ASP A 262 1555 1555 1.35 LINK C ARG A 268 N MSE A 269 1555 1555 1.34 LINK C MSE A 269 N PRO A 270 1555 1555 1.37 LINK C GLU A 293 N MSE A 294 1555 1555 1.34 LINK C MSE A 294 N ALA A 295 1555 1555 1.35 LINK C ALA A 331 N MSE A 332 1555 1555 1.31 LINK C MSE A 332 N PHE A 333 1555 1555 1.36 LINK C PRO A 368 N MSE A 369 1555 1555 1.35 LINK C MSE A 369 N PHE A 370 1555 1555 1.35 LINK C LYS A 380 N MSE A 381 1555 1555 1.34 LINK C MSE A 381 N THR A 382 1555 1555 1.35 LINK C GLU A 453 N MSE A 454 1555 1555 1.36 LINK C MSE A 454 N LEU A 455 1555 1555 1.35 LINK C LEU A 455 N MSE A 456 1555 1555 1.35 LINK C MSE A 456 N SER A 457 1555 1555 1.35 LINK C MSE C 247 N GLU C 248 1555 1555 1.35 LINK C ILE C 260 N MSE C 261 1555 1555 1.35 LINK C MSE C 261 N ASP C 262 1555 1555 1.35 LINK C ARG C 268 N MSE C 269 1555 1555 1.34 LINK C MSE C 269 N PRO C 270 1555 1555 1.37 LINK C GLU C 293 N MSE C 294 1555 1555 1.34 LINK C MSE C 294 N ALA C 295 1555 1555 1.35 LINK C ALA C 331 N MSE C 332 1555 1555 1.32 LINK C MSE C 332 N PHE C 333 1555 1555 1.36 LINK C PRO C 368 N MSE C 369 1555 1555 1.35 LINK C MSE C 369 N PHE C 370 1555 1555 1.34 LINK C LYS C 380 N MSE C 381 1555 1555 1.35 LINK C MSE C 381 N THR C 382 1555 1555 1.34 LINK C GLU C 453 N MSE C 454 1555 1555 1.36 LINK C MSE C 454 N LEU C 455 1555 1555 1.36 LINK C LEU C 455 N MSE C 456 1555 1555 1.35 LINK C MSE C 456 N SER C 457 1555 1555 1.35 CISPEP 1 ASP C 474 VAL C 475 0 -1.04 SITE 1 AC1 11 ASN A 287 MSE A 294 HIS A 298 MSE A 332 SITE 2 AC1 11 PHE A 333 SER A 336 ILE A 356 ILE A 361 SITE 3 AC1 11 TYR A 373 MSE A 454 TRP A 458 SITE 1 AC2 10 ASN C 287 LEU C 291 MSE C 294 HIS C 298 SITE 2 AC2 10 PHE C 333 SER C 336 ILE C 339 SER C 359 SITE 3 AC2 10 TYR C 373 HIS C 451 CRYST1 71.847 82.960 188.971 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013918 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012054 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005292 0.00000 HETATM 1 N MSE A 247 -6.031 16.823 29.166 1.00 88.57 N ANISOU 1 N MSE A 247 11352 12358 9941 -772 2441 1700 N HETATM 2 CA MSE A 247 -5.539 16.285 27.903 1.00 86.46 C ANISOU 2 CA MSE A 247 11130 11841 9881 -876 2291 1672 C HETATM 3 C MSE A 247 -5.765 17.263 26.734 1.00 87.90 C ANISOU 3 C MSE A 247 11014 12162 10222 -744 2150 1494 C HETATM 4 O MSE A 247 -4.807 17.578 26.022 1.00 85.51 O ANISOU 4 O MSE A 247 10799 11655 10036 -587 1953 1433 O HETATM 5 CB MSE A 247 -6.185 14.933 27.615 1.00 89.60 C ANISOU 5 CB MSE A 247 11574 12160 10309 -1292 2439 1764 C