PDB Short entry for 5Q0M HEADER TRANSCRIPTION 31-MAY-17 5Q0M TITLE LIGAND BINDING TO FARNESOID-X-RECEPTOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: BILE ACID RECEPTOR; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: FARNESOID X-ACTIVATED RECEPTOR,FARNESOL RECEPTOR HRR-1, COMPND 5 NUCLEAR RECEPTOR SUBFAMILY 1 GROUP H MEMBER 4,RETINOID X RECEPTOR- COMPND 6 INTERACTING PROTEIN 14,RXR-INTERACTING PROTEIN 14; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: COACTIVATOR PEPTIDE SRC-1 HD3; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: UNP RESIDUES 744-757; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NR1H4, BAR, FXR, HRR1, RIP14; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606 KEYWDS D3R, FXR, DOCKING, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR M.G.RUDOLPH,J.BENZ,D.BURGER,R.THOMA,A.RUF,C.JOSEPH,B.KUHN,C.SHAO, AUTHOR 2 H.YANG,S.K.BURLEY REVDAT 7 17-NOV-21 5Q0M 1 REMARK REVDAT 6 10-FEB-21 5Q0M 1 AUTHOR JRNL REVDAT 5 21-FEB-18 5Q0M 1 REMARK REVDAT 4 31-JAN-18 5Q0M 1 JRNL REVDAT 3 20-DEC-17 5Q0M 1 JRNL REVDAT 2 19-JUL-17 5Q0M 1 AUTHOR JRNL REVDAT 1 05-JUL-17 5Q0M 0 JRNL AUTH Z.GAIEB,S.LIU,S.GATHIAKA,M.CHIU,H.YANG,C.SHAO,V.A.FEHER, JRNL AUTH 2 W.P.WALTERS,B.KUHN,M.G.RUDOLPH,S.K.BURLEY,M.K.GILSON, JRNL AUTH 3 R.E.AMARO JRNL TITL D3R GRAND CHALLENGE 2: BLIND PREDICTION OF PROTEIN-LIGAND JRNL TITL 2 POSES, AFFINITY RANKINGS, AND RELATIVE BINDING FREE JRNL TITL 3 ENERGIES. JRNL REF J. COMPUT. AIDED MOL. DES. V. 32 1 2018 JRNL REFN ESSN 1573-4951 JRNL PMID 29204945 JRNL DOI 10.1007/S10822-017-0088-4 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.51 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.060 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 11735 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 584 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.5204 - 3.4918 1.00 2853 136 0.1514 0.2266 REMARK 3 2 3.4918 - 2.7717 1.00 2780 152 0.1997 0.2687 REMARK 3 3 2.7717 - 2.4214 1.00 2756 142 0.2215 0.2727 REMARK 3 4 2.4214 - 2.2000 1.00 2762 154 0.2751 0.4153 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.350 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.780 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 2002 REMARK 3 ANGLE : 1.024 2710 REMARK 3 CHIRALITY : 0.300 307 REMARK 3 PLANARITY : 0.006 340 REMARK 3 DIHEDRAL : 10.546 1681 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 247 THROUGH 265 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.2067 23.4853 12.4027 REMARK 3 T TENSOR REMARK 3 T11: 0.2600 T22: 0.4633 REMARK 3 T33: 0.5667 T12: 0.0966 REMARK 3 T13: 0.0361 T23: -0.0194 REMARK 3 L TENSOR REMARK 3 L11: 0.7007 L22: 0.4614 REMARK 3 L33: 0.6230 L12: -0.0541 REMARK 3 L13: 0.3367 L23: 0.1735 REMARK 3 S TENSOR REMARK 3 S11: -0.4570 S12: -0.0167 S13: 0.1002 REMARK 3 S21: 0.1835 S22: 0.1052 S23: -0.2631 REMARK 3 S31: 0.0293 S32: 0.2674 S33: 0.0039 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 266 THROUGH 283 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.1084 50.7497 -0.7235 REMARK 3 T TENSOR REMARK 3 T11: 0.6461 T22: 0.5180 REMARK 3 T33: 0.7798 T12: -0.0461 REMARK 3 T13: -0.0375 T23: 0.0003 REMARK 3 L TENSOR REMARK 3 L11: 0.0135 L22: 0.5402 REMARK 3 L33: 0.3764 L12: -0.1202 REMARK 3 L13: -0.0179 L23: 0.3417 REMARK 3 S TENSOR REMARK 3 S11: -0.1837 S12: -0.2890 S13: 1.0001 REMARK 3 S21: -0.0362 S22: -0.4173 S23: -1.3731 REMARK 3 S31: -0.2351 S32: -0.4195 S33: -0.1022 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 284 THROUGH 316 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.0740 36.9654 -5.3171 REMARK 3 T TENSOR REMARK 3 T11: 0.2957 T22: 0.3058 REMARK 3 T33: 0.3584 T12: -0.0191 REMARK 3 T13: 0.1167 T23: -0.0209 REMARK 3 L TENSOR REMARK 3 L11: 0.8556 L22: 0.3938 REMARK 3 L33: 2.9791 L12: -0.3273 REMARK 3 L13: 0.2214 L23: 0.0326 REMARK 3 S TENSOR REMARK 3 S11: 0.1298 S12: 0.1394 S13: 0.4208 REMARK 3 S21: -0.8083 S22: -0.3936 S23: -0.8974 REMARK 3 S31: 0.1067 S32: 0.1328 S33: -0.0201 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 317 THROUGH 342 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.4994 32.1929 -2.4529 REMARK 3 T TENSOR REMARK 3 T11: 0.3035 T22: 0.2995 REMARK 3 T33: 0.2588 T12: -0.0412 REMARK 3 T13: 0.0228 T23: -0.0427 REMARK 3 L TENSOR REMARK 3 L11: 1.5364 L22: 2.3447 REMARK 3 L33: 2.0103 L12: 0.3594 REMARK 3 L13: 0.1705 L23: -2.1439 REMARK 3 S TENSOR REMARK 3 S11: 0.0310 S12: -0.0161 S13: 0.0670 REMARK 3 S21: -0.3787 S22: 0.1896 S23: -0.2014 REMARK 3 S31: -0.1536 S32: 0.2331 S33: 0.0007 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 343 THROUGH 379 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.4962 43.9637 2.6182 REMARK 3 T TENSOR REMARK 3 T11: 0.3899 T22: 0.5202 REMARK 3 T33: 0.4830 T12: 0.1435 REMARK 3 T13: 0.0640 T23: -0.0514 REMARK 3 L TENSOR REMARK 3 L11: 0.1359 L22: 2.1547 REMARK 3 L33: 0.9953 L12: -0.4536 REMARK 3 L13: 0.6504 L23: -1.6297 REMARK 3 S TENSOR REMARK 3 S11: -0.0883 S12: -0.2153 S13: 0.0395 REMARK 3 S21: 0.1015 S22: 0.2138 S23: 0.5593 REMARK 3 S31: -0.3186 S32: -0.6219 S33: 0.0009 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 380 THROUGH 404 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.9913 25.1916 1.2138 REMARK 3 T TENSOR REMARK 3 T11: 0.2434 T22: 0.2997 REMARK 3 T33: 0.1989 T12: -0.0839 REMARK 3 T13: 0.0240 T23: -0.0005 REMARK 3 L TENSOR REMARK 3 L11: 2.0637 L22: 1.3282 REMARK 3 L33: 1.0646 L12: -0.1719 REMARK 3 L13: -0.0139 L23: -1.1762 REMARK 3 S TENSOR REMARK 3 S11: -0.1694 S12: 0.0878 S13: 0.0751 REMARK 3 S21: 0.1128 S22: -0.0044 S23: 0.0873 REMARK 3 S31: 0.9455 S32: -0.3788 S33: -0.0002 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 405 THROUGH 426 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.3128 17.7761 7.1568 REMARK 3 T TENSOR REMARK 3 T11: 0.4417 T22: 0.3469 REMARK 3 T33: 0.3719 T12: 0.0045 REMARK 3 T13: 0.1122 T23: -0.0114 REMARK 3 L TENSOR REMARK 3 L11: 2.7128 L22: 0.2622 REMARK 3 L33: 3.3979 L12: -0.4501 REMARK 3 L13: -0.4203 L23: -0.5739 REMARK 3 S TENSOR REMARK 3 S11: -0.3296 S12: -0.6028 S13: -0.5150 REMARK 3 S21: -0.1822 S22: 0.4115 S23: -0.2140 REMARK 3 S31: 1.1146 S32: -0.0110 S33: 0.0369 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 427 THROUGH 456 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.1014 28.8387 2.9674 REMARK 3 T TENSOR REMARK 3 T11: 0.2415 T22: 0.5146 REMARK 3 T33: 0.3939 T12: -0.1129 REMARK 3 T13: -0.0108 T23: -0.0166 REMARK 3 L TENSOR REMARK 3 L11: 3.2047 L22: 2.7018 REMARK 3 L33: 1.0226 L12: -1.5716 REMARK 3 L13: -0.7773 L23: -0.9446 REMARK 3 S TENSOR REMARK 3 S11: -0.2578 S12: -0.4022 S13: -0.0532 REMARK 3 S21: -0.3239 S22: 0.4813 S23: 0.8785 REMARK 3 S31: 0.3876 S32: -1.1435 S33: 0.1903 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 457 THROUGH 474 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.4742 39.1521 -15.4387 REMARK 3 T TENSOR REMARK 3 T11: 0.5952 T22: 0.3489 REMARK 3 T33: 0.2829 T12: 0.0127 REMARK 3 T13: -0.0587 T23: -0.0538 REMARK 3 L TENSOR REMARK 3 L11: 0.8522 L22: 2.0280 REMARK 3 L33: 1.7681 L12: 0.6571 REMARK 3 L13: 0.5119 L23: -1.1348 REMARK 3 S TENSOR REMARK 3 S11: -0.3631 S12: 0.9453 S13: 0.1174 REMARK 3 S21: -2.0076 S22: -0.2885 S23: -0.0186 REMARK 3 S31: -0.4925 S32: 0.6059 S33: -0.1633 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 746 THROUGH 755 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.4970 32.7678 -13.7324 REMARK 3 T TENSOR REMARK 3 T11: 0.7298 T22: 0.3356 REMARK 3 T33: 0.4853 T12: -0.0648 REMARK 3 T13: 0.4722 T23: 0.0144 REMARK 3 L TENSOR REMARK 3 L11: 4.0814 L22: 4.7752 REMARK 3 L33: 4.0507 L12: -4.1305 REMARK 3 L13: 3.2134 L23: -2.3454 REMARK 3 S TENSOR REMARK 3 S11: -1.2088 S12: 0.3507 S13: 0.0610 REMARK 3 S21: -0.9504 S22: -0.6012 S23: -1.7641 REMARK 3 S31: 1.0423 S32: 0.6471 S33: -1.7377 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5Q0M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JUN-17. REMARK 100 THE DEPOSITION ID IS D_1001401348. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-SEP-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11752 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 46.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.140 REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.6100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.59 REMARK 200 R MERGE FOR SHELL (I) : 0.54340 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.5, 1.4 M SODIUM REMARK 280 CITRATE, EVAPORATION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 30.39333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 15.19667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 22.79500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 7.59833 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 37.99167 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 244 REMARK 465 SER A 245 REMARK 465 HIS A 246 REMARK 465 ARG A 459 REMARK 465 VAL A 460 REMARK 465 ASN A 461 REMARK 465 ASP A 462 REMARK 465 HIS A 463 REMARK 465 VAL A 475 REMARK 465 GLN A 476 REMARK 465 LYS B 744 REMARK 465 ASP B 745 REMARK 465 ASP B 756 REMARK 465 GLU B 757 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 346 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 342 -39.33 -131.87 REMARK 500 TYR A 401 20.39 80.94 REMARK 500 LYS A 403 -70.26 -81.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 9L1 A 501 DBREF 5Q0M A 248 476 UNP Q96RI1 NR1H4_HUMAN 258 486 DBREF 5Q0M B 744 757 UNP A8K1V4 A8K1V4_HUMAN 744 757 SEQADV 5Q0M GLY A 244 UNP Q96RI1 EXPRESSION TAG SEQADV 5Q0M SER A 245 UNP Q96RI1 EXPRESSION TAG SEQADV 5Q0M HIS A 246 UNP Q96RI1 EXPRESSION TAG SEQADV 5Q0M MET A 247 UNP Q96RI1 EXPRESSION TAG SEQADV 5Q0M ALA A 281 UNP Q96RI1 GLU 291 CONFLICT SEQADV 5Q0M ALA A 354 UNP Q96RI1 GLU 364 CONFLICT SEQRES 1 A 233 GLY SER HIS MET GLU LEU THR PRO ASP GLN GLN THR LEU SEQRES 2 A 233 LEU HIS PHE ILE MET ASP SER TYR ASN LYS GLN ARG MET SEQRES 3 A 233 PRO GLN GLU ILE THR ASN LYS ILE LEU LYS GLU ALA PHE SEQRES 4 A 233 SER ALA GLU GLU ASN PHE LEU ILE LEU THR GLU MET ALA SEQRES 5 A 233 THR ASN HIS VAL GLN VAL LEU VAL GLU PHE THR LYS LYS SEQRES 6 A 233 LEU PRO GLY PHE GLN THR LEU ASP HIS GLU ASP GLN ILE SEQRES 7 A 233 ALA LEU LEU LYS GLY SER ALA VAL GLU ALA MET PHE LEU SEQRES 8 A 233 ARG SER ALA GLU ILE PHE ASN LYS LYS LEU PRO SER GLY SEQRES 9 A 233 HIS SER ASP LEU LEU GLU ALA ARG ILE ARG ASN SER GLY SEQRES 10 A 233 ILE SER ASP GLU TYR ILE THR PRO MET PHE SER PHE TYR SEQRES 11 A 233 LYS SER ILE GLY GLU LEU LYS MET THR GLN GLU GLU TYR SEQRES 12 A 233 ALA LEU LEU THR ALA ILE VAL ILE LEU SER PRO ASP ARG SEQRES 13 A 233 GLN TYR ILE LYS ASP ARG GLU ALA VAL GLU LYS LEU GLN SEQRES 14 A 233 GLU PRO LEU LEU ASP VAL LEU GLN LYS LEU CYS LYS ILE SEQRES 15 A 233 HIS GLN PRO GLU ASN PRO GLN HIS PHE ALA CYS LEU LEU SEQRES 16 A 233 GLY ARG LEU THR GLU LEU ARG THR PHE ASN HIS HIS HIS SEQRES 17 A 233 ALA GLU MET LEU MET SER TRP ARG VAL ASN ASP HIS LYS SEQRES 18 A 233 PHE THR PRO LEU LEU CYS GLU ILE TRP ASP VAL GLN SEQRES 1 B 14 LYS ASP HIS GLN LEU LEU ARG TYR LEU LEU ASP LYS ASP SEQRES 2 B 14 GLU HET 9L1 A 501 39 HETNAM 9L1 5-{[(3BETA,5BETA,14BETA,17ALPHA)-3-HYDROXY-24- HETNAM 2 9L1 OXOCHOLAN-24-YL]AMINO}BENZENE-1,3-DICARBOXYLIC ACID FORMUL 3 9L1 C32 H45 N O6 FORMUL 4 HOH *39(H2 O) HELIX 1 AA1 THR A 250 LYS A 266 1 17 HELIX 2 AA2 PRO A 270 GLU A 280 1 11 HELIX 3 AA3 SER A 283 LYS A 308 1 26 HELIX 4 AA4 GLY A 311 LEU A 315 5 5 HELIX 5 AA5 ASP A 316 LYS A 343 1 28 HELIX 6 AA6 PRO A 345 ASN A 358 1 14 HELIX 7 AA7 SER A 362 LYS A 380 1 19 HELIX 8 AA8 THR A 382 LEU A 395 1 14 HELIX 9 AA9 ASP A 404 GLN A 427 1 24 HELIX 10 AB1 GLN A 432 SER A 457 1 26 HELIX 11 AB2 THR A 466 ASP A 474 1 9 HELIX 12 AB3 GLN B 747 LYS B 755 1 9 SITE 1 AC1 14 MET A 269 THR A 274 PHE A 288 LEU A 291 SITE 2 AC1 14 THR A 292 MET A 294 HIS A 298 MET A 332 SITE 3 AC1 14 ARG A 335 ILE A 339 ILE A 361 TYR A 365 SITE 4 AC1 14 TYR A 373 HIS A 451 CRYST1 93.562 93.562 45.590 90.00 90.00 120.00 P 65 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010688 0.006171 0.000000 0.00000 SCALE2 0.000000 0.012342 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021935 0.00000