PDB Short entry for 5SV9 HEADER TRANSPORT PROTEIN 05-AUG-16 5SV9 TITLE STRUCTURE OF THE SLC4 TRANSPORTER BOR1P IN AN INWARD-FACING TITLE 2 CONFORMATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: BOR1P BORON TRANSPORTER; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES MIKATAE; SOURCE 3 ORGANISM_TAXID: 114525; SOURCE 4 EXPRESSION_SYSTEM: SACCHAROMYCES CEREVISIAE; SOURCE 5 EXPRESSION_SYSTEM_COMMON: YEAST; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 4932 KEYWDS BORON TRANSPORTER, ANION EXCHANGER FAMILY, ALTERNATING ACCESS KEYWDS 2 MECHANISM, STRUCTURAL GENOMICS, PSI-BIOLOGY, TRANSCONTINENTAL EM KEYWDS 3 INITIATIVE FOR MEMBRANE PROTEIN STRUCTURE, TEMIMPS, TRANSPORT KEYWDS 4 PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR N.COUDRAY,S.SEYLER,R.LASALA,Z.ZHANG,K.M.CLARK,M.E.DUMONT,A.ROHOU, AUTHOR 2 O.BECKSTEIN,D.L.STOKES,TRANSCONTINENTAL EM INITIATIVE FOR MEMBRANE AUTHOR 3 PROTEIN STRUCTURE (TEMIMPS) REVDAT 7 06-MAR-24 5SV9 1 REMARK REVDAT 6 25-DEC-19 5SV9 1 REMARK REVDAT 5 23-JAN-19 5SV9 1 REMARK REVDAT 4 13-SEP-17 5SV9 1 REMARK REVDAT 3 11-JAN-17 5SV9 1 JRNL REVDAT 2 19-OCT-16 5SV9 1 JRNL REVDAT 1 17-AUG-16 5SV9 0 JRNL AUTH N.COUDRAY,S.L SEYLER,R.LASALA,Z.ZHANG,K.M.CLARK,M.E.DUMONT, JRNL AUTH 2 A.ROHOU,O.BECKSTEIN,D.L.STOKES JRNL TITL STRUCTURE OF THE SLC4 TRANSPORTER BOR1P IN AN INWARD-FACING JRNL TITL 2 CONFORMATION. JRNL REF PROTEIN SCI. V. 26 130 2017 JRNL REFN ESSN 1469-896X JRNL PMID 27717063 JRNL DOI 10.1002/PRO.3061 REMARK 2 REMARK 2 RESOLUTION. 5.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : SPARX/EMAN2, CTFFIND, FREALIX, SITUS, REMARK 3 NAMD, FREALIX, FREALIX, FREALIX, SPARX/ REMARK 3 EMAN2 REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 4YZF REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : FLEXIBLE FIT REMARK 3 REFINEMENT TARGET : CROSS-CORRELATION COEFFICIENT REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : A HOMOLOGY MODEL WAS FIRST CREATED USING HUMAN REMARK 3 AE1 (PDB ENTRY 4YZF) AS A TEMPLATE USING MODELLER, PLACED INTO REMARK 3 THE DENSITY MAP USING SITUS, AND THEN FITTED INTO THE MAP USING REMARK 3 THE MOLECULAR DYNAMICS FLEXIBLE FITTING (MDFF) METHOD. REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 5.900 REMARK 3 NUMBER OF PARTICLES : 75 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: RECONSTRUCTION WAS DONE USING D1 SYMMETRY BECAUSE REMARK 3 OF AN EXISTING TWO-FOLD SYMMETRY IN THE UNIT CELLS COMPOSING THE REMARK 3 HELICAL LATTICE. THIS TWO-FOLD AXIS RUNS PERPENDICULAR TO THE REMARK 3 HELICAL AXIS. FOR THE FINAL STRUCTURE, A FILTER WAS APPLIED TO REMARK 3 THE MAP IN ORDER TO COMPENSATE FOR RESOLUTION-DEPENDENT REMARK 3 AMPLITUDE FALLOFF. TO DO SO, WE BUILT A MODEL BY ARRANGING URAA REMARK 3 IN A HELICAL ASSEMBLY IN ORDER TO MIMIC THE MASS DISTRIBUTION IN REMARK 3 BOR1P TUBES. FOURIER TRANSFORMS FROM THIS MODEL AND FROM THE REMARK 3 EXPERIMENTAL MAPS WERE THEN ROTATIONALLY AVERAGED TO PRODUCE 1D REMARK 3 SCATTERING PROFILES. THE RESOLUTION-DEPENDENT AMPLITUDE RATIO REMARK 3 FROM THESE PROFILES WAS USED AS A FILTER THAT WAS APPLIED TO THE REMARK 3 EXPERIMENTAL AMPLITUDES USING SPARX ROUTINES. FINALLY, A LOW- REMARK 3 PASS FILTER WAS APPLIED WITH A 5 ANGSTROM STOP-BAND FREQUENCY. REMARK 4 REMARK 4 5SV9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-AUG-16. REMARK 100 THE DEPOSITION ID IS D_1000223155. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : HELICAL REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : HELICAL ARRAY REMARK 245 PARTICLE TYPE : HELICAL REMARK 245 NAME OF SAMPLE : BOR1P DIMER IN AN INWARD-FACING REMARK 245 CONFORMATION REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 0.25 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.00 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 252 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TECNAI F20 REMARK 245 DETECTOR TYPE : GATAN K2 SUMMIT (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1000.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2500.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.00 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 4500.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 19000 REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 200 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 HELICAL SYMMETRY WITH THE FOLLOWING PARAMETERS: REMARK 300 ROTATION PER SUBUNIT (TWIST) = 37.35 DEGREES REMARK 300 RISE PER SUBUNIT (HEIGHT) = 4.80 ANGSTROMS REMARK 300 IN ADDITION, THERE IS DYAD SYMMETRY REMARK 300 PERPENDICULAR TO THE HELIX AXIS REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO A 61 CA PRO A 61 C -0.161 REMARK 500 VAL A 117 N VAL A 117 CA -0.122 REMARK 500 VAL A 158 N VAL A 158 CA -0.122 REMARK 500 VAL A 158 CA VAL A 158 CB -0.132 REMARK 500 PRO A 162 CA PRO A 162 C -0.124 REMARK 500 TYR A 221 CB TYR A 221 CG 0.090 REMARK 500 PHE A 274 CB PHE A 274 CG -0.104 REMARK 500 HIS A 320 CB HIS A 320 CG 0.127 REMARK 500 PRO A 408 CA PRO A 408 C -0.121 REMARK 500 ILE A 430 CA ILE A 430 C -0.164 REMARK 500 ARG A 432 CD ARG A 432 NE 0.180 REMARK 500 ARG A 432 NE ARG A 432 CZ 0.085 REMARK 500 PHE A 460 CA PHE A 460 C -0.163 REMARK 500 VAL A 486 N VAL A 486 CA -0.120 REMARK 500 PRO B 61 CA PRO B 61 C -0.159 REMARK 500 TRP B 134 CB TRP B 134 CG -0.111 REMARK 500 PHE B 308 CA PHE B 308 C -0.182 REMARK 500 ASP B 309 CA ASP B 309 C -0.175 REMARK 500 PHE B 330 CA PHE B 330 CB 0.176 REMARK 500 PHE B 330 CB PHE B 330 CG 0.145 REMARK 500 GLY B 338 CA GLY B 338 C -0.122 REMARK 500 PRO B 357 CA PRO B 357 C -0.121 REMARK 500 ILE B 430 CA ILE B 430 C -0.162 REMARK 500 ARG B 432 CD ARG B 432 NE 0.120 REMARK 500 SER B 496 N SER B 496 CA -0.148 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TRP A 25 CB - CG - CD2 ANGL. DEV. = -21.6 DEGREES REMARK 500 ARG A 31 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 TYR A 34 CA - CB - CG ANGL. DEV. = -12.4 DEGREES REMARK 500 TYR A 34 CB - CG - CD2 ANGL. DEV. = -6.2 DEGREES REMARK 500 TYR A 35 CB - CG - CD2 ANGL. DEV. = -4.6 DEGREES REMARK 500 ASP A 74 CA - CB - CG ANGL. DEV. = -15.1 DEGREES REMARK 500 TYR A 77 CB - CG - CD2 ANGL. DEV. = -6.2 DEGREES REMARK 500 TYR A 77 CB - CG - CD1 ANGL. DEV. = 5.0 DEGREES REMARK 500 MET A 88 N - CA - CB ANGL. DEV. = 11.5 DEGREES REMARK 500 ALA A 89 CB - CA - C ANGL. DEV. = -9.7 DEGREES REMARK 500 PRO A 100 C - N - CD ANGL. DEV. = -15.3 DEGREES REMARK 500 VAL A 106 C - N - CA ANGL. DEV. = 16.6 DEGREES REMARK 500 PRO A 109 C - N - CD ANGL. DEV. = -12.9 DEGREES REMARK 500 TYR A 115 CB - CG - CD2 ANGL. DEV. = -5.4 DEGREES REMARK 500 TYR A 115 CB - CG - CD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 TYR A 128 CB - CG - CD2 ANGL. DEV. = -3.7 DEGREES REMARK 500 TYR A 128 CB - CG - CD1 ANGL. DEV. = -5.7 DEGREES REMARK 500 PHE A 129 CB - CG - CD1 ANGL. DEV. = 4.6 DEGREES REMARK 500 PHE A 133 CB - CG - CD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 PHE A 133 CB - CG - CD1 ANGL. DEV. = 6.8 DEGREES REMARK 500 PHE A 148 CB - CG - CD2 ANGL. DEV. = -4.2 DEGREES REMARK 500 PHE A 148 CB - CG - CD1 ANGL. DEV. = 4.4 DEGREES REMARK 500 GLN A 156 N - CA - CB ANGL. DEV. = -13.4 DEGREES REMARK 500 TYR A 157 N - CA - CB ANGL. DEV. = -11.6 DEGREES REMARK 500 TYR A 157 CB - CG - CD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 TYR A 157 CB - CG - CD1 ANGL. DEV. = 5.1 DEGREES REMARK 500 THR A 159 N - CA - C ANGL. DEV. = -21.4 DEGREES REMARK 500 THR A 160 N - CA - C ANGL. DEV. = 17.3 DEGREES REMARK 500 PHE A 161 N - CA - C ANGL. DEV. = 22.6 DEGREES REMARK 500 CYS A 163 CA - CB - SG ANGL. DEV. = -11.1 DEGREES REMARK 500 ASN A 171 CB - CA - C ANGL. DEV. = -15.6 DEGREES REMARK 500 PHE A 186 CB - CG - CD2 ANGL. DEV. = -5.0 DEGREES REMARK 500 PHE A 186 CB - CG - CD1 ANGL. DEV. = 5.3 DEGREES REMARK 500 VAL A 195 C - N - CA ANGL. DEV. = 17.4 DEGREES REMARK 500 ASP A 197 CB - CA - C ANGL. DEV. = -13.0 DEGREES REMARK 500 VAL A 207 CA - CB - CG1 ANGL. DEV. = 15.0 DEGREES REMARK 500 PHE A 211 CB - CG - CD2 ANGL. DEV. = -4.8 DEGREES REMARK 500 PHE A 215 CB - CG - CD1 ANGL. DEV. = 4.7 DEGREES REMARK 500 SER A 217 CB - CA - C ANGL. DEV. = -12.7 DEGREES REMARK 500 HIS A 219 CA - CB - CG ANGL. DEV. = 15.7 DEGREES REMARK 500 TYR A 221 CA - CB - CG ANGL. DEV. = 16.0 DEGREES REMARK 500 TYR A 221 CB - CG - CD2 ANGL. DEV. = -5.7 DEGREES REMARK 500 TYR A 221 CB - CG - CD1 ANGL. DEV. = 8.5 DEGREES REMARK 500 PRO A 222 C - N - CA ANGL. DEV. = 13.1 DEGREES REMARK 500 PHE A 224 CB - CG - CD1 ANGL. DEV. = 4.4 DEGREES REMARK 500 THR A 225 N - CA - CB ANGL. DEV. = 14.1 DEGREES REMARK 500 ILE A 232 N - CA - C ANGL. DEV. = 24.4 DEGREES REMARK 500 TYR A 235 CB - CA - C ANGL. DEV. = -13.8 DEGREES REMARK 500 TYR A 235 CB - CG - CD2 ANGL. DEV. = -6.4 DEGREES REMARK 500 LYS A 258 N - CA - CB ANGL. DEV. = 10.9 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 169 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 75 116.72 76.95 REMARK 500 SER A 76 -84.09 -158.09 REMARK 500 ALA A 97 127.07 14.69 REMARK 500 PRO A 100 23.74 -147.90 REMARK 500 CYS A 102 162.65 -38.01 REMARK 500 VAL A 106 160.88 -38.60 REMARK 500 ASN A 125 -25.50 64.32 REMARK 500 SER A 127 141.24 -32.82 REMARK 500 THR A 149 165.93 -45.07 REMARK 500 ASN A 150 51.26 -143.81 REMARK 500 THR A 159 -134.80 -135.59 REMARK 500 SER A 190 172.51 -42.06 REMARK 500 LYS A 193 10.67 -151.50 REMARK 500 PRO A 222 164.20 -44.24 REMARK 500 LEU A 223 2.87 -173.02 REMARK 500 PHE A 224 -105.76 -134.35 REMARK 500 TYR A 235 36.23 -95.19 REMARK 500 ASN A 255 143.88 -173.84 REMARK 500 ASP A 256 35.23 176.17 REMARK 500 LYS A 261 -97.61 -100.69 REMARK 500 PRO A 263 179.93 -43.46 REMARK 500 THR A 265 144.68 -179.43 REMARK 500 SER A 267 -152.01 -132.80 REMARK 500 THR A 271 -68.82 -133.83 REMARK 500 ASN A 275 -60.17 -94.66 REMARK 500 ARG A 276 131.63 -36.16 REMARK 500 GLN A 278 58.50 -153.10 REMARK 500 ASN A 279 85.68 -42.43 REMARK 500 THR A 280 11.19 80.64 REMARK 500 LEU A 282 93.61 -174.02 REMARK 500 GLU A 285 63.15 -113.62 REMARK 500 PRO A 286 74.34 -167.20 REMARK 500 ARG A 319 103.49 27.29 REMARK 500 LYS A 323 78.87 4.77 REMARK 500 LEU A 324 127.90 178.57 REMARK 500 LYS A 326 -179.75 -66.79 REMARK 500 PRO A 350 -177.14 -60.67 REMARK 500 ILE A 356 -66.07 -106.77 REMARK 500 LEU A 366 55.73 -100.11 REMARK 500 VAL A 368 92.18 -171.28 REMARK 500 ARG A 369 9.98 -153.47 REMARK 500 ASP A 370 13.42 -153.84 REMARK 500 ASN A 372 -146.57 -161.31 REMARK 500 GLN A 373 -1.35 -155.62 REMARK 500 ASN A 374 -103.12 -130.20 REMARK 500 THR A 395 -141.68 169.10 REMARK 500 ASN A 422 135.80 -35.73 REMARK 500 THR A 426 50.17 -144.14 REMARK 500 ARG A 442 -18.62 -146.54 REMARK 500 ASP A 444 -10.36 178.10 REMARK 500 REMARK 500 THIS ENTRY HAS 111 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 37 ASP A 38 -143.30 REMARK 500 PRO A 162 CYS A 163 -147.34 REMARK 500 ASP A 197 GLY A 198 149.42 REMARK 500 TYR A 253 LEU A 254 143.42 REMARK 500 LYS A 326 PRO A 327 -149.50 REMARK 500 ASP A 370 SER A 371 146.20 REMARK 500 SER A 496 PHE A 497 -139.74 REMARK 500 PRO B 297 PHE B 298 -148.67 REMARK 500 HIS B 331 TYR B 332 -141.23 REMARK 500 PRO B 357 GLN B 358 -148.12 REMARK 500 PHE B 497 THR B 498 -117.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 31 0.15 SIDE CHAIN REMARK 500 TYR A 35 0.09 SIDE CHAIN REMARK 500 PHE A 43 0.20 SIDE CHAIN REMARK 500 TYR A 55 0.08 SIDE CHAIN REMARK 500 ARG A 72 0.09 SIDE CHAIN REMARK 500 TYR A 115 0.10 SIDE CHAIN REMARK 500 TYR A 128 0.25 SIDE CHAIN REMARK 500 HIS A 143 0.08 SIDE CHAIN REMARK 500 TYR A 174 0.08 SIDE CHAIN REMARK 500 PHE A 199 0.09 SIDE CHAIN REMARK 500 PHE A 218 0.12 SIDE CHAIN REMARK 500 TYR A 221 0.10 SIDE CHAIN REMARK 500 TYR A 235 0.22 SIDE CHAIN REMARK 500 PHE A 268 0.08 SIDE CHAIN REMARK 500 PHE A 274 0.09 SIDE CHAIN REMARK 500 PHE A 306 0.10 SIDE CHAIN REMARK 500 HIS A 320 0.08 SIDE CHAIN REMARK 500 TYR A 322 0.10 SIDE CHAIN REMARK 500 HIS A 362 0.15 SIDE CHAIN REMARK 500 ARG A 377 0.09 SIDE CHAIN REMARK 500 ARG A 398 0.09 SIDE CHAIN REMARK 500 PHE A 416 0.33 SIDE CHAIN REMARK 500 ARG A 432 0.12 SIDE CHAIN REMARK 500 ARG A 442 0.11 SIDE CHAIN REMARK 500 ARG A 455 0.32 SIDE CHAIN REMARK 500 PHE A 468 0.17 SIDE CHAIN REMARK 500 PHE A 472 0.18 SIDE CHAIN REMARK 500 PHE A 483 0.08 SIDE CHAIN REMARK 500 TYR B 34 0.21 SIDE CHAIN REMARK 500 PHE B 56 0.09 SIDE CHAIN REMARK 500 TYR B 115 0.07 SIDE CHAIN REMARK 500 TYR B 118 0.09 SIDE CHAIN REMARK 500 PHE B 148 0.12 SIDE CHAIN REMARK 500 TYR B 157 0.14 SIDE CHAIN REMARK 500 TYR B 174 0.17 SIDE CHAIN REMARK 500 PHE B 218 0.14 SIDE CHAIN REMARK 500 HIS B 226 0.19 SIDE CHAIN REMARK 500 ARG B 229 0.09 SIDE CHAIN REMARK 500 PHE B 247 0.12 SIDE CHAIN REMARK 500 TYR B 253 0.13 SIDE CHAIN REMARK 500 PHE B 259 0.08 SIDE CHAIN REMARK 500 TYR B 307 0.12 SIDE CHAIN REMARK 500 PHE B 308 0.14 SIDE CHAIN REMARK 500 ARG B 319 0.09 SIDE CHAIN REMARK 500 ARG B 325 0.09 SIDE CHAIN REMARK 500 HIS B 331 0.10 SIDE CHAIN REMARK 500 TYR B 332 0.08 SIDE CHAIN REMARK 500 ARG B 398 0.21 SIDE CHAIN REMARK 500 PHE B 416 0.30 SIDE CHAIN REMARK 500 PHE B 435 0.08 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 54 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 SER A 37 11.89 REMARK 500 ARG A 46 10.29 REMARK 500 LEU A 124 -12.05 REMARK 500 ASN A 150 -10.84 REMARK 500 ASP A 197 -13.34 REMARK 500 LYS A 216 11.57 REMARK 500 TYR A 253 -10.94 REMARK 500 PRO A 263 10.20 REMARK 500 ASP A 370 -13.36 REMARK 500 ASN A 374 10.81 REMARK 500 VAL A 375 -11.33 REMARK 500 GLY A 423 -11.41 REMARK 500 ASN A 476 -10.57 REMARK 500 SER A 496 13.33 REMARK 500 VAL B 104 -11.26 REMARK 500 GLN B 156 10.39 REMARK 500 VAL B 158 -11.76 REMARK 500 PRO B 297 14.22 REMARK 500 HIS B 320 -10.01 REMARK 500 HIS B 331 13.37 REMARK 500 PRO B 357 15.26 REMARK 500 LYS B 441 -10.09 REMARK 500 PHE B 497 21.27 REMARK 500 THR B 498 -12.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-8313 RELATED DB: EMDB REMARK 900 STRUCTURE OF THE SLC4 TRANSPORTER BOR1P IN AN INWARD-FACING REMARK 900 CONFORMATION DBREF 5SV9 A 24 499 PDB 5SV9 5SV9 24 499 DBREF 5SV9 B 24 499 PDB 5SV9 5SV9 24 499 SEQRES 1 A 476 ILE TRP LEU ASP LEU LYS ASP ARG ILE PRO TYR TYR LYS SEQRES 2 A 476 SER ASP TRP VAL ASP ALA PHE ASN TYR ARG VAL ILE PRO SEQRES 3 A 476 SER THR VAL ASP THR TYR PHE ASN ASN LEU LEU PRO ALA SEQRES 4 A 476 ILE ALA PHE ALA GLN ASP MET PHE ASP ARG THR ASP ASN SEQRES 5 A 476 SER TYR GLY VAL ASN GLU VAL LEU LEU SER SER ALA MET SEQRES 6 A 476 ALA GLY ILE VAL PHE GLY VAL LEU ALA GLY GLN PRO LEU SEQRES 7 A 476 CYS ILE VAL GLY VAL THR GLY PRO ILE SER ILE PHE ASN SEQRES 8 A 476 TYR THR VAL TYR GLU ILE ILE LYS PRO LEU ASN THR SER SEQRES 9 A 476 TYR PHE GLY PHE MET PHE TRP ILE CYS LEU TRP SER MET SEQRES 10 A 476 ILE PHE HIS LEU LEU LEU ALA PHE THR ASN VAL VAL CYS SEQRES 11 A 476 LEU LEU GLN TYR VAL THR THR PHE PRO CYS ASP ILE PHE SEQRES 12 A 476 GLY LEU PHE ILE ASN VAL VAL TYR ILE GLN LYS GLY ILE SEQRES 13 A 476 GLN ILE LEU THR ARG GLN PHE HIS ASN THR SER GLY GLU SEQRES 14 A 476 LYS SER VAL GLN ASP GLY PHE ALA SER VAL VAL VAL ALA SEQRES 15 A 476 LEU VAL MET THR ALA PHE GLY LEU PHE PHE LYS SER PHE SEQRES 16 A 476 HIS HIS TYR PRO LEU PHE THR HIS LYS ILE ARG THR PHE SEQRES 17 A 476 ILE SER ASP TYR SER THR ALA LEU SER VAL LEU PHE TRP SEQRES 18 A 476 SER SER PHE THR HIS PHE GLY GLY TYR LEU ASN ASP VAL SEQRES 19 A 476 LYS PHE LYS LYS LEU PRO ILE THR LYS SER PHE PHE PRO SEQRES 20 A 476 THR SER LYS PHE ASN ARG PRO GLN ASN THR TRP LEU ALA SEQRES 21 A 476 TYR GLU PRO ILE PRO VAL LYS ASP VAL PHE ILE ALA LEU SEQRES 22 A 476 PRO PHE GLY ILE ILE LEU THR ILE LEU PHE TYR PHE ASP SEQRES 23 A 476 HIS ASN VAL SER SER LEU MET ALA GLN ARG HIS GLN TYR SEQRES 24 A 476 LYS LEU ARG LYS PRO SER SER PHE HIS TYR ASP PHE ALA SEQRES 25 A 476 LEU LEU GLY LEU THR THR CYS ILE SER GLY VAL LEU GLY SEQRES 26 A 476 ILE PRO ALA PRO ASN GLY LEU ILE PRO GLN ALA PRO LEU SEQRES 27 A 476 HIS THR GLU THR LEU LEU VAL ARG ASP SER ASN GLN ASN SEQRES 28 A 476 VAL VAL ARG CYS VAL GLU GLN ARG LEU THR ASN THR PHE SEQRES 29 A 476 GLN GLY LEU MET ILE LEU GLY THR MET THR ARG PRO LEU SEQRES 30 A 476 LEU VAL CYS LEU GLY GLU ILE PRO GLN ALA VAL LEU SER SEQRES 31 A 476 GLY LEU PHE PHE ILE MET GLY ILE ASN GLY LEU MET THR SEQRES 32 A 476 ASN VAL ILE ILE HIS ARG ILE VAL PHE LEU PHE SER ASP SEQRES 33 A 476 PRO LYS ARG ARG ASP ASN ASN SER PRO LEU ALA LYS ILE SEQRES 34 A 476 SER LYS ARG SER MET VAL ILE PHE LEU CYS PHE SER LEU SEQRES 35 A 476 ALA GLY PHE THR GLY GLU PHE ALA ILE THR ASN THR ILE SEQRES 36 A 476 ALA ALA ILE GLY PHE PRO LEU VAL LEU LEU LEU SER VAL SEQRES 37 A 476 ILE VAL SER PHE SER PHE THR TYR SEQRES 1 B 476 ILE TRP LEU ASP LEU LYS ASP ARG ILE PRO TYR TYR LYS SEQRES 2 B 476 SER ASP TRP VAL ASP ALA PHE ASN TYR ARG VAL ILE PRO SEQRES 3 B 476 SER THR VAL ASP THR TYR PHE ASN ASN LEU LEU PRO ALA SEQRES 4 B 476 ILE ALA PHE ALA GLN ASP MET PHE ASP ARG THR ASP ASN SEQRES 5 B 476 SER TYR GLY VAL ASN GLU VAL LEU LEU SER SER ALA MET SEQRES 6 B 476 ALA GLY ILE VAL PHE GLY VAL LEU ALA GLY GLN PRO LEU SEQRES 7 B 476 CYS ILE VAL GLY VAL THR GLY PRO ILE SER ILE PHE ASN SEQRES 8 B 476 TYR THR VAL TYR GLU ILE ILE LYS PRO LEU ASN THR SER SEQRES 9 B 476 TYR PHE GLY PHE MET PHE TRP ILE CYS LEU TRP SER MET SEQRES 10 B 476 ILE PHE HIS LEU LEU LEU ALA PHE THR ASN VAL VAL CYS SEQRES 11 B 476 LEU LEU GLN TYR VAL THR THR PHE PRO CYS ASP ILE PHE SEQRES 12 B 476 GLY LEU PHE ILE ASN VAL VAL TYR ILE GLN LYS GLY ILE SEQRES 13 B 476 GLN ILE LEU THR ARG GLN PHE HIS ASN THR SER GLY GLU SEQRES 14 B 476 LYS SER VAL GLN ASP GLY PHE ALA SER VAL VAL VAL ALA SEQRES 15 B 476 LEU VAL MET THR ALA PHE GLY LEU PHE PHE LYS SER PHE SEQRES 16 B 476 HIS HIS TYR PRO LEU PHE THR HIS LYS ILE ARG THR PHE SEQRES 17 B 476 ILE SER ASP TYR SER THR ALA LEU SER VAL LEU PHE TRP SEQRES 18 B 476 SER SER PHE THR HIS PHE GLY GLY TYR LEU ASN ASP VAL SEQRES 19 B 476 LYS PHE LYS LYS LEU PRO ILE THR LYS SER PHE PHE PRO SEQRES 20 B 476 THR SER LYS PHE ASN ARG PRO GLN ASN THR TRP LEU ALA SEQRES 21 B 476 TYR GLU PRO ILE PRO VAL LYS ASP VAL PHE ILE ALA LEU SEQRES 22 B 476 PRO PHE GLY ILE ILE LEU THR ILE LEU PHE TYR PHE ASP SEQRES 23 B 476 HIS ASN VAL SER SER LEU MET ALA GLN ARG HIS GLN TYR SEQRES 24 B 476 LYS LEU ARG LYS PRO SER SER PHE HIS TYR ASP PHE ALA SEQRES 25 B 476 LEU LEU GLY LEU THR THR CYS ILE SER GLY VAL LEU GLY SEQRES 26 B 476 ILE PRO ALA PRO ASN GLY LEU ILE PRO GLN ALA PRO LEU SEQRES 27 B 476 HIS THR GLU THR LEU LEU VAL ARG ASP SER ASN GLN ASN SEQRES 28 B 476 VAL VAL ARG CYS VAL GLU GLN ARG LEU THR ASN THR PHE SEQRES 29 B 476 GLN GLY LEU MET ILE LEU GLY THR MET THR ARG PRO LEU SEQRES 30 B 476 LEU VAL CYS LEU GLY GLU ILE PRO GLN ALA VAL LEU SER SEQRES 31 B 476 GLY LEU PHE PHE ILE MET GLY ILE ASN GLY LEU MET THR SEQRES 32 B 476 ASN VAL ILE ILE HIS ARG ILE VAL PHE LEU PHE SER ASP SEQRES 33 B 476 PRO LYS ARG ARG ASP ASN ASN SER PRO LEU ALA LYS ILE SEQRES 34 B 476 SER LYS ARG SER MET VAL ILE PHE LEU CYS PHE SER LEU SEQRES 35 B 476 ALA GLY PHE THR GLY GLU PHE ALA ILE THR ASN THR ILE SEQRES 36 B 476 ALA ALA ILE GLY PHE PRO LEU VAL LEU LEU LEU SER VAL SEQRES 37 B 476 ILE VAL SER PHE SER PHE THR TYR HELIX 1 AA1 ILE A 24 LYS A 36 1 13 HELIX 2 AA2 SER A 37 PHE A 43 1 7 HELIX 3 AA3 ARG A 46 THR A 73 1 28 HELIX 4 AA4 GLY A 78 ALA A 97 1 20 HELIX 5 AA5 THR A 107 LYS A 122 1 16 HELIX 6 AA6 SER A 127 THR A 149 1 23 HELIX 7 AA7 VAL A 151 VAL A 158 5 8 HELIX 8 AA8 PHE A 161 ASN A 188 1 28 HELIX 9 AA9 GLY A 198 TYR A 221 1 24 HELIX 10 AB1 THR A 225 SER A 233 1 9 HELIX 11 AB2 TYR A 235 PHE A 250 1 16 HELIX 12 AB3 PRO A 288 ILE A 294 1 7 HELIX 13 AB4 ALA A 295 ARG A 319 1 25 HELIX 14 AB5 SER A 329 GLY A 348 1 20 HELIX 15 AB6 PRO A 357 LEU A 366 1 10 HELIX 16 AB7 ARG A 382 MET A 391 1 10 HELIX 17 AB8 MET A 396 ILE A 407 1 12 HELIX 18 AB9 PRO A 408 ASN A 422 1 15 HELIX 19 AC1 ASN A 427 SER A 438 1 12 HELIX 20 AC2 ASN A 446 ILE A 452 1 7 HELIX 21 AC3 SER A 453 THR A 477 1 25 HELIX 22 AC4 ALA A 479 ILE A 481 5 3 HELIX 23 AC5 GLY A 482 SER A 494 1 13 HELIX 24 AC6 PHE A 495 PHE A 497 5 3 HELIX 25 AC7 TRP B 25 ASP B 38 1 14 HELIX 26 AC8 TRP B 39 PHE B 43 5 5 HELIX 27 AC9 ASN B 44 TYR B 45 5 2 HELIX 28 AD1 ARG B 46 THR B 73 1 28 HELIX 29 AD2 GLY B 78 ALA B 97 1 20 HELIX 30 AD3 THR B 107 LYS B 122 1 16 HELIX 31 AD4 PRO B 123 ASN B 125 5 3 HELIX 32 AD5 SER B 127 THR B 149 1 23 HELIX 33 AD6 ASN B 150 VAL B 158 5 9 HELIX 34 AD7 PRO B 162 ASN B 188 1 27 HELIX 35 AD8 ASP B 197 TYR B 221 1 25 HELIX 36 AD9 THR B 225 TYR B 235 1 11 HELIX 37 AE1 TYR B 235 PHE B 250 1 16 HELIX 38 AE2 PRO B 288 ILE B 294 1 7 HELIX 39 AE3 ALA B 295 ARG B 319 1 25 HELIX 40 AE4 PHE B 330 GLY B 348 1 19 HELIX 41 AE5 PRO B 357 LEU B 366 1 10 HELIX 42 AE6 ARG B 382 MET B 391 1 10 HELIX 43 AE7 ILE B 392 THR B 395 5 4 HELIX 44 AE8 LEU B 400 ILE B 407 1 8 HELIX 45 AE9 PRO B 408 ASN B 422 1 15 HELIX 46 AF1 ASN B 427 SER B 438 1 12 HELIX 47 AF2 ASN B 446 SER B 453 1 8 HELIX 48 AF3 SER B 453 ILE B 478 1 26 HELIX 49 AF4 ALA B 479 ILE B 481 5 3 HELIX 50 AF5 GLY B 482 SER B 494 1 13 HELIX 51 AF6 PHE B 495 THR B 498 5 4 SHEET 1 AA1 2 VAL A 104 GLY A 105 0 SHEET 2 AA1 2 ASN A 353 GLY A 354 -1 O ASN A 353 N GLY A 105 CISPEP 1 SER A 194 VAL A 195 0 4.66 CISPEP 2 SER B 194 VAL B 195 0 5.74 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000