PDB Short entry for 5T46 HEADER TRANSLATION 29-AUG-16 5T46 TITLE CRYSTAL STRUCTURE OF THE HUMAN EIF4E-EIF4G COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: EUKARYOTIC TRANSLATION INITIATION FACTOR 4E; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: EIF4E,EIF-4F 25 KDA SUBUNIT,MRNA CAP-BINDING PROTEIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 1; COMPND 8 CHAIN: B, D; COMPND 9 SYNONYM: EIF-4G1,P220; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EIF4E, EIF4EL1, EIF4F; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: STAR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PETMCN; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: EIF4G1, EIF4F, EIF4G, EIF4GI; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 18 EXPRESSION_SYSTEM_VARIANT: STAR; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PETMCN KEYWDS TRANSLATION, GENE REGULATION, CAP BINDING PROTEIN, 4E-BINDING KEYWDS 2 PROTEIN, TRANSLATION INITIATION, EIF4F EXPDTA X-RAY DIFFRACTION AUTHOR S.GRUENER,D.PETER,R.WEBER,L.WOHLBOLD,M.-Y.CHUNG,O.WEICHENRIEDER, AUTHOR 2 E.VALKOV,C.IGREJA,E.IZAURRALDE REVDAT 4 17-JAN-24 5T46 1 REMARK REVDAT 3 16-NOV-16 5T46 1 JRNL REVDAT 2 02-NOV-16 5T46 1 JRNL REVDAT 1 26-OCT-16 5T46 0 JRNL AUTH S.GRUNER,D.PETER,R.WEBER,L.WOHLBOLD,M.Y.CHUNG, JRNL AUTH 2 O.WEICHENRIEDER,E.VALKOV,C.IGREJA,E.IZAURRALDE JRNL TITL THE STRUCTURES OF EIF4E-EIF4G COMPLEXES REVEAL AN EXTENDED JRNL TITL 2 INTERFACE TO REGULATE TRANSLATION INITIATION. JRNL REF MOL.CELL V. 64 467 2016 JRNL REFN ISSN 1097-2765 JRNL PMID 27773676 JRNL DOI 10.1016/J.MOLCEL.2016.09.020 REMARK 2 REMARK 2 RESOLUTION. 1.53 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10_2152) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.53 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.65 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.010 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 74411 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.140 REMARK 3 R VALUE (WORKING SET) : 0.139 REMARK 3 FREE R VALUE : 0.162 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.950 REMARK 3 FREE R VALUE TEST SET COUNT : 3681 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.6659 - 4.5312 0.99 2807 142 0.1660 0.1708 REMARK 3 2 4.5312 - 3.5970 1.00 2752 141 0.1324 0.1348 REMARK 3 3 3.5970 - 3.1425 1.00 2744 134 0.1332 0.1517 REMARK 3 4 3.1425 - 2.8552 1.00 2749 125 0.1328 0.1506 REMARK 3 5 2.8552 - 2.6506 1.00 2707 147 0.1386 0.1662 REMARK 3 6 2.6506 - 2.4943 1.00 2733 142 0.1243 0.1627 REMARK 3 7 2.4943 - 2.3694 1.00 2720 144 0.1276 0.1558 REMARK 3 8 2.3694 - 2.2663 1.00 2715 136 0.1147 0.1510 REMARK 3 9 2.2663 - 2.1790 1.00 2774 117 0.1178 0.1524 REMARK 3 10 2.1790 - 2.1038 1.00 2740 127 0.1210 0.1518 REMARK 3 11 2.1038 - 2.0381 1.00 2675 165 0.1147 0.1494 REMARK 3 12 2.0381 - 1.9798 1.00 2718 131 0.1100 0.1308 REMARK 3 13 1.9798 - 1.9277 1.00 2714 172 0.1164 0.1514 REMARK 3 14 1.9277 - 1.8807 1.00 2675 137 0.1189 0.1717 REMARK 3 15 1.8807 - 1.8379 1.00 2746 149 0.1223 0.1615 REMARK 3 16 1.8379 - 1.7988 1.00 2675 145 0.1377 0.1701 REMARK 3 17 1.7988 - 1.7628 1.00 2711 145 0.1542 0.2033 REMARK 3 18 1.7628 - 1.7295 1.00 2733 133 0.1734 0.2137 REMARK 3 19 1.7295 - 1.6986 1.00 2645 168 0.1785 0.2272 REMARK 3 20 1.6986 - 1.6699 1.00 2704 147 0.1827 0.2317 REMARK 3 21 1.6699 - 1.6429 1.00 2710 151 0.1883 0.2379 REMARK 3 22 1.6429 - 1.6176 1.00 2712 137 0.2024 0.2129 REMARK 3 23 1.6176 - 1.5938 1.00 2755 130 0.2133 0.2680 REMARK 3 24 1.5938 - 1.5714 1.00 2684 129 0.2175 0.2461 REMARK 3 25 1.5714 - 1.5502 1.00 2716 144 0.2363 0.2640 REMARK 3 26 1.5502 - 1.5300 1.00 2716 143 0.2565 0.2964 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.690 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.99 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3782 REMARK 3 ANGLE : 0.918 5128 REMARK 3 CHIRALITY : 0.053 527 REMARK 3 PLANARITY : 0.006 670 REMARK 3 DIHEDRAL : 13.591 2270 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: TORSIONAL NCS RESTRAINTS WERE APPLIED REMARK 3 RELATING CHAINS A, B TO CHAINS C, D. INDIVIDUAL B-FACTORS WERE REMARK 3 REFINED ANISOTROPICALLY EXCEPT FOR WATER ATOMS. HYDROGENS WERE REMARK 3 REFINED IN THE RIDING POSITIONS REMARK 4 REMARK 4 5T46 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-AUG-16. REMARK 100 THE DEPOSITION ID IS D_1000223575. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.25 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97857 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : DYNAMICALLY BENDABLE MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 74453 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.530 REMARK 200 RESOLUTION RANGE LOW (A) : 44.650 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05200 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.53 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.56 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 1.01300 REMARK 200 R SYM FOR SHELL (I) : 1.01300 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4TPW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.25, 25% W/V PEG 6000, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 35.17350 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -2 REMARK 465 LEU A -1 REMARK 465 GLU A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 THR A 3 REMARK 465 VAL A 4 REMARK 465 GLU A 5 REMARK 465 PRO A 6 REMARK 465 GLU A 7 REMARK 465 THR A 8 REMARK 465 THR A 9 REMARK 465 PRO A 10 REMARK 465 THR A 11 REMARK 465 PRO A 12 REMARK 465 ASN A 13 REMARK 465 PRO A 14 REMARK 465 PRO A 15 REMARK 465 THR A 16 REMARK 465 THR A 17 REMARK 465 GLU A 18 REMARK 465 GLU A 19 REMARK 465 GLU A 20 REMARK 465 LYS A 21 REMARK 465 THR A 22 REMARK 465 GLU A 23 REMARK 465 SER A 24 REMARK 465 ASN A 25 REMARK 465 GLN A 26 REMARK 465 GLU A 27 REMARK 465 VAL A 28 REMARK 465 ALA A 29 REMARK 465 ASN A 30 REMARK 465 SER A 207 REMARK 465 GLY A 208 REMARK 465 SER A 209 REMARK 465 THR A 210 REMARK 465 THR A 211 REMARK 465 LYS A 212 REMARK 465 ASN A 213 REMARK 465 ARG A 214 REMARK 465 PHE A 215 REMARK 465 VAL A 216 REMARK 465 VAL A 217 REMARK 465 GLY B 588 REMARK 465 PRO B 589 REMARK 465 HIS B 590 REMARK 465 MET B 591 REMARK 465 GLN B 592 REMARK 465 LYS B 593 REMARK 465 TYR B 594 REMARK 465 GLU B 595 REMARK 465 TYR B 596 REMARK 465 LYS B 597 REMARK 465 SER B 598 REMARK 465 ASP B 599 REMARK 465 GLN B 600 REMARK 465 TRP B 601 REMARK 465 LYS B 602 REMARK 465 PRO B 603 REMARK 465 LEU B 604 REMARK 465 ASN B 605 REMARK 465 LEU B 606 REMARK 465 GLU B 607 REMARK 465 LYS B 643 REMARK 465 ALA B 644 REMARK 465 ASN B 645 REMARK 465 LYS B 646 REMARK 465 THR B 647 REMARK 465 PRO B 648 REMARK 465 LEU B 649 REMARK 465 ARG B 650 REMARK 465 PRO B 651 REMARK 465 LEU B 652 REMARK 465 ASP B 653 REMARK 465 MET C -2 REMARK 465 LEU C -1 REMARK 465 GLU C 0 REMARK 465 MET C 1 REMARK 465 ALA C 2 REMARK 465 THR C 3 REMARK 465 VAL C 4 REMARK 465 GLU C 5 REMARK 465 PRO C 6 REMARK 465 GLU C 7 REMARK 465 THR C 8 REMARK 465 THR C 9 REMARK 465 PRO C 10 REMARK 465 THR C 11 REMARK 465 PRO C 12 REMARK 465 ASN C 13 REMARK 465 PRO C 14 REMARK 465 PRO C 15 REMARK 465 THR C 16 REMARK 465 THR C 17 REMARK 465 GLU C 18 REMARK 465 GLU C 19 REMARK 465 GLU C 20 REMARK 465 LYS C 21 REMARK 465 THR C 22 REMARK 465 GLU C 23 REMARK 465 SER C 24 REMARK 465 ASN C 25 REMARK 465 GLN C 26 REMARK 465 GLU C 27 REMARK 465 VAL C 28 REMARK 465 ALA C 29 REMARK 465 SER C 207 REMARK 465 GLY C 208 REMARK 465 SER C 209 REMARK 465 THR C 210 REMARK 465 THR C 211 REMARK 465 LYS C 212 REMARK 465 ASN C 213 REMARK 465 ARG C 214 REMARK 465 PHE C 215 REMARK 465 VAL C 216 REMARK 465 VAL C 217 REMARK 465 GLY D 588 REMARK 465 PRO D 589 REMARK 465 HIS D 590 REMARK 465 MET D 591 REMARK 465 GLN D 592 REMARK 465 LYS D 593 REMARK 465 TYR D 594 REMARK 465 GLU D 595 REMARK 465 TYR D 596 REMARK 465 LYS D 597 REMARK 465 SER D 598 REMARK 465 ASP D 599 REMARK 465 GLN D 600 REMARK 465 TRP D 601 REMARK 465 LYS D 602 REMARK 465 PRO D 603 REMARK 465 LEU D 604 REMARK 465 ASN D 605 REMARK 465 LEU D 606 REMARK 465 LYS D 643 REMARK 465 ALA D 644 REMARK 465 ASN D 645 REMARK 465 LYS D 646 REMARK 465 THR D 647 REMARK 465 PRO D 648 REMARK 465 LEU D 649 REMARK 465 ARG D 650 REMARK 465 PRO D 651 REMARK 465 LEU D 652 REMARK 465 ASP D 653 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ2 LYS A 184 O HOH A 401 1.55 REMARK 500 OH TYR C 145 OE2 GLU C 174 1.99 REMARK 500 O HOH A 456 O HOH A 536 2.08 REMARK 500 NZ LYS A 184 O HOH A 401 2.14 REMARK 500 O HOH C 473 O HOH C 527 2.14 REMARK 500 OE1 GLU A 132 O2 GOL A 302 2.16 REMARK 500 O GLY A 188 O HOH A 402 2.18 REMARK 500 O HOH C 478 O HOH C 551 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU D 608 O3 GOL C 305 1455 2.15 REMARK 500 O HOH C 497 O HOH C 529 2456 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 170 CB CYS A 170 SG -0.120 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 63 -60.36 -90.82 REMARK 500 ILE A 63 -60.49 -90.73 REMARK 500 ASP A 67 24.72 -147.87 REMARK 500 ASP A 125 -22.00 -140.15 REMARK 500 ASP A 143 -128.98 53.51 REMARK 500 VAL B 639 -60.25 -121.55 REMARK 500 ASP C 67 25.00 -148.40 REMARK 500 ASP C 143 -128.65 53.83 REMARK 500 THR C 205 42.18 -83.44 REMARK 500 VAL D 639 -56.04 -121.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MGP A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MGP C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL C 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL C 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL C 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL C 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL C 306 DBREF 5T46 A 1 217 UNP P06730 IF4E_HUMAN 1 217 DBREF 5T46 B 592 653 UNP Q04637 IF4G1_HUMAN 592 653 DBREF 5T46 C 1 217 UNP P06730 IF4E_HUMAN 1 217 DBREF 5T46 D 592 653 UNP Q04637 IF4G1_HUMAN 592 653 SEQADV 5T46 MET A -2 UNP P06730 INITIATING METHIONINE SEQADV 5T46 LEU A -1 UNP P06730 EXPRESSION TAG SEQADV 5T46 GLU A 0 UNP P06730 EXPRESSION TAG SEQADV 5T46 GLY B 588 UNP Q04637 EXPRESSION TAG SEQADV 5T46 PRO B 589 UNP Q04637 EXPRESSION TAG SEQADV 5T46 HIS B 590 UNP Q04637 EXPRESSION TAG SEQADV 5T46 MET B 591 UNP Q04637 EXPRESSION TAG SEQADV 5T46 MET C -2 UNP P06730 INITIATING METHIONINE SEQADV 5T46 LEU C -1 UNP P06730 EXPRESSION TAG SEQADV 5T46 GLU C 0 UNP P06730 EXPRESSION TAG SEQADV 5T46 GLY D 588 UNP Q04637 EXPRESSION TAG SEQADV 5T46 PRO D 589 UNP Q04637 EXPRESSION TAG SEQADV 5T46 HIS D 590 UNP Q04637 EXPRESSION TAG SEQADV 5T46 MET D 591 UNP Q04637 EXPRESSION TAG SEQRES 1 A 220 MET LEU GLU MET ALA THR VAL GLU PRO GLU THR THR PRO SEQRES 2 A 220 THR PRO ASN PRO PRO THR THR GLU GLU GLU LYS THR GLU SEQRES 3 A 220 SER ASN GLN GLU VAL ALA ASN PRO GLU HIS TYR ILE LYS SEQRES 4 A 220 HIS PRO LEU GLN ASN ARG TRP ALA LEU TRP PHE PHE LYS SEQRES 5 A 220 ASN ASP LYS SER LYS THR TRP GLN ALA ASN LEU ARG LEU SEQRES 6 A 220 ILE SER LYS PHE ASP THR VAL GLU ASP PHE TRP ALA LEU SEQRES 7 A 220 TYR ASN HIS ILE GLN LEU SER SER ASN LEU MET PRO GLY SEQRES 8 A 220 CYS ASP TYR SER LEU PHE LYS ASP GLY ILE GLU PRO MET SEQRES 9 A 220 TRP GLU ASP GLU LYS ASN LYS ARG GLY GLY ARG TRP LEU SEQRES 10 A 220 ILE THR LEU ASN LYS GLN GLN ARG ARG SER ASP LEU ASP SEQRES 11 A 220 ARG PHE TRP LEU GLU THR LEU LEU CYS LEU ILE GLY GLU SEQRES 12 A 220 SER PHE ASP ASP TYR SER ASP ASP VAL CYS GLY ALA VAL SEQRES 13 A 220 VAL ASN VAL ARG ALA LYS GLY ASP LYS ILE ALA ILE TRP SEQRES 14 A 220 THR THR GLU CYS GLU ASN ARG GLU ALA VAL THR HIS ILE SEQRES 15 A 220 GLY ARG VAL TYR LYS GLU ARG LEU GLY LEU PRO PRO LYS SEQRES 16 A 220 ILE VAL ILE GLY TYR GLN SER HIS ALA ASP THR ALA THR SEQRES 17 A 220 LYS SER GLY SER THR THR LYS ASN ARG PHE VAL VAL SEQRES 1 B 66 GLY PRO HIS MET GLN LYS TYR GLU TYR LYS SER ASP GLN SEQRES 2 B 66 TRP LYS PRO LEU ASN LEU GLU GLU LYS LYS ARG TYR ASP SEQRES 3 B 66 ARG GLU PHE LEU LEU GLY PHE GLN PHE ILE PHE ALA SER SEQRES 4 B 66 MET GLN LYS PRO GLU GLY LEU PRO HIS ILE SER ASP VAL SEQRES 5 B 66 VAL LEU ASP LYS ALA ASN LYS THR PRO LEU ARG PRO LEU SEQRES 6 B 66 ASP SEQRES 1 C 220 MET LEU GLU MET ALA THR VAL GLU PRO GLU THR THR PRO SEQRES 2 C 220 THR PRO ASN PRO PRO THR THR GLU GLU GLU LYS THR GLU SEQRES 3 C 220 SER ASN GLN GLU VAL ALA ASN PRO GLU HIS TYR ILE LYS SEQRES 4 C 220 HIS PRO LEU GLN ASN ARG TRP ALA LEU TRP PHE PHE LYS SEQRES 5 C 220 ASN ASP LYS SER LYS THR TRP GLN ALA ASN LEU ARG LEU SEQRES 6 C 220 ILE SER LYS PHE ASP THR VAL GLU ASP PHE TRP ALA LEU SEQRES 7 C 220 TYR ASN HIS ILE GLN LEU SER SER ASN LEU MET PRO GLY SEQRES 8 C 220 CYS ASP TYR SER LEU PHE LYS ASP GLY ILE GLU PRO MET SEQRES 9 C 220 TRP GLU ASP GLU LYS ASN LYS ARG GLY GLY ARG TRP LEU SEQRES 10 C 220 ILE THR LEU ASN LYS GLN GLN ARG ARG SER ASP LEU ASP SEQRES 11 C 220 ARG PHE TRP LEU GLU THR LEU LEU CYS LEU ILE GLY GLU SEQRES 12 C 220 SER PHE ASP ASP TYR SER ASP ASP VAL CYS GLY ALA VAL SEQRES 13 C 220 VAL ASN VAL ARG ALA LYS GLY ASP LYS ILE ALA ILE TRP SEQRES 14 C 220 THR THR GLU CYS GLU ASN ARG GLU ALA VAL THR HIS ILE SEQRES 15 C 220 GLY ARG VAL TYR LYS GLU ARG LEU GLY LEU PRO PRO LYS SEQRES 16 C 220 ILE VAL ILE GLY TYR GLN SER HIS ALA ASP THR ALA THR SEQRES 17 C 220 LYS SER GLY SER THR THR LYS ASN ARG PHE VAL VAL SEQRES 1 D 66 GLY PRO HIS MET GLN LYS TYR GLU TYR LYS SER ASP GLN SEQRES 2 D 66 TRP LYS PRO LEU ASN LEU GLU GLU LYS LYS ARG TYR ASP SEQRES 3 D 66 ARG GLU PHE LEU LEU GLY PHE GLN PHE ILE PHE ALA SER SEQRES 4 D 66 MET GLN LYS PRO GLU GLY LEU PRO HIS ILE SER ASP VAL SEQRES 5 D 66 VAL LEU ASP LYS ALA ASN LYS THR PRO LEU ARG PRO LEU SEQRES 6 D 66 ASP HET MGP A 301 49 HET GOL A 302 12 HET GOL A 303 14 HET MGP C 301 49 HET GOL C 302 14 HET GOL C 303 14 HET GOL C 304 14 HET GOL C 305 14 HET GOL C 306 14 HETNAM MGP 7-METHYL-GUANOSINE-5'-TRIPHOSPHATE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 MGP 2(C11 H19 N5 O14 P3 1+) FORMUL 6 GOL 7(C3 H8 O3) FORMUL 14 HOH *346(H2 O) HELIX 1 AA1 VAL A 69 ASN A 77 1 9 HELIX 2 AA2 GLN A 121 SER A 124 1 4 HELIX 3 AA3 LEU A 126 ILE A 138 1 13 HELIX 4 AA3 ARG A 173 LEU A 187 1 15 HELIX 5 AA4 HIS A 200 ALA A 204 1 5 HELIX 6 AA6 ARG B 614 PHE B 620 1 7 HELIX 7 AA7 TRP C 56 ASN C 59 1 4 HELIX 8 AA8 VAL C 69 ASN C 77 1 9 HELIX 9 AA9 GLN C 121 SER C 124 1 4 HELIX 10 AB1 LEU C 126 ILE C 138 1 13 HELIX 11 AB2 ARG C 173 LEU C 187 1 15 HELIX 12 AB3 HIS C 200 ALA C 204 1 5 HELIX 13 AB4 ARG D 614 PHE D 620 1 7 SHEET 1 AA1 7 LEU A 60 THR A 68 0 SHEET 2 AA1 7 LEU A 39 PHE A 48 -1 N LEU A 45 O ILE A 63 SHEET 3 AA1 7 ASP A 90 LYS A 95 -1 O SER A 92 N TRP A 46 SHEET 4 AA1 7 VAL A 149 ASN A 155 -1 O VAL A 154 N TYR A 91 SHEET 5 AA1 7 LYS A 162 THR A 167 -1 O TRP A 166 N CYS A 150 SHEET 6 AA1 7 GLY A 111 THR A 116 -1 N GLY A 111 O THR A 167 SHEET 7 AA1 7 GLY A 196 SER A 199 -1 O GLY A 196 N LEU A 114 SHEET 1 AA2 7 LEU C 60 THR C 68 0 SHEET 2 AA2 7 LEU C 39 PHE C 48 -1 N PHE C 47 O ARG C 61 SHEET 3 AA2 7 ASP C 90 LYS C 95 -1 O SER C 92 N TRP C 46 SHEET 4 AA2 7 VAL C 149 ASN C 155 -1 O VAL C 154 N TYR C 91 SHEET 5 AA2 7 LYS C 162 THR C 167 -1 O TRP C 166 N CYS C 150 SHEET 6 AA2 7 GLY C 111 THR C 116 -1 N GLY C 111 O THR C 167 SHEET 7 AA2 7 GLY C 196 SER C 199 -1 O GLY C 196 N LEU C 114 SITE 1 AC1 14 TRP A 56 MET A 101 TRP A 102 GLU A 103 SITE 2 AC1 14 ARG A 157 LYS A 162 LYS A 206 HOH A 408 SITE 3 AC1 14 HOH A 420 HOH A 431 HOH A 442 HOH A 462 SITE 4 AC1 14 HOH A 482 GLU B 608 SITE 1 AC2 6 ARG A 128 PHE A 129 GLU A 132 ARG A 186 SITE 2 AC2 6 LEU A 187 ARG B 614 SITE 1 AC3 2 GLU A 174 HOH A 417 SITE 1 AC4 10 TRP C 56 MET C 101 TRP C 102 GLU C 103 SITE 2 AC4 10 ARG C 157 LYS C 162 HOH C 402 HOH C 421 SITE 3 AC4 10 HOH C 428 HOH C 432 SITE 1 AC5 4 TYR C 76 ARG C 128 HOH C 497 HOH C 525 SITE 1 AC6 6 ARG C 128 GLU C 132 ARG C 186 LEU C 187 SITE 2 AC6 6 GLY C 188 ARG D 614 SITE 1 AC7 1 LYS C 184 SITE 1 AC8 4 LYS C 54 ASN C 59 HOH C 463 GLU D 608 SITE 1 AC9 8 LYS A 54 ALA A 58 ARG A 61 HOH A 447 SITE 2 AC9 8 LEU C 39 GLN C 40 HOH C 417 LYS D 610 CRYST1 45.250 70.347 79.913 90.00 99.37 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022099 0.000000 0.003645 0.00000 SCALE2 0.000000 0.014215 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012683 0.00000