PDB Short entry for 5TKD HEADER TRANSFERASE 06-OCT-16 5TKD TITLE CRYSTAL STRUCTURE OF TYROSINE KINASE 2 JH2 (PSEUDO KINASE DOMAIN) TITLE 2 COMPLEXED WITH 6-[(3,5-DIMETHYLPHE NYL)AMINO]-8- (METHYLAMINO) TITLE 3 IMIDAZO[1,2-B]PYRIDAZINE-3-CARBO XAMIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: NON-RECEPTOR TYROSINE-PROTEIN KINASE TYK2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: PSEUDO KINASE DOMAIN (UNP RESIDUES 575-869); COMPND 5 EC: 2.7.10.2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TYK2; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_VECTOR: BACULOVIRUS KEYWDS KINASE, TYK2, PSEUDOKINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.K.MUCKELBAUER REVDAT 3 04-OCT-23 5TKD 1 REMARK REVDAT 2 29-AUG-18 5TKD 1 JRNL REVDAT 1 28-DEC-16 5TKD 0 JRNL AUTH R.MOSLIN,D.GARDNER,J.SANTELLA,Y.ZHANG,J.V.DUNCIA,C.LIU, JRNL AUTH 2 J.LIN,J.S.TOKARSKI,J.STRNAD,D.PEDICORD,J.CHEN,Y.BLAT, JRNL AUTH 3 A.ZUPA-FERNANDEZ,L.CHENG,H.SUN,C.CHAUDHRY,C.HUANG, JRNL AUTH 4 C.D'ARIENZO,J.S.SACK,J.K.MUCKELBAUER,C.CHANG,J.TREDUP,D.XIE, JRNL AUTH 5 N.ARANIBAR,J.R.BURKE,P.H.CARTER,D.S.WEINSTEIN JRNL TITL IDENTIFICATION OF IMIDAZO[1,2-B]PYRIDAZINE TYK2 PSEUDOKINASE JRNL TITL 2 LIGANDS AS POTENT AND SELECTIVE ALLOSTERIC INHIBITORS OF JRNL TITL 3 TYK2 SIGNALLING. JRNL REF MEDCHEMCOMM V. 8 700 2017 JRNL REFN ISSN 2040-2503 JRNL PMID 30108788 JRNL DOI 10.1039/C6MD00560H REMARK 2 REMARK 2 RESOLUTION. 1.92 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT 2.11.7 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SMART,VONRHEIN,WOMACK, REMARK 3 : MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.92 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.11 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 47061 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 2371 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.92 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.97 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.75 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 3454 REMARK 3 BIN R VALUE (WORKING + TEST SET) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3265 REMARK 3 BIN R VALUE (WORKING SET) : 0.1970 REMARK 3 BIN FREE R VALUE : 0.2330 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.47 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 189 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3753 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 61 REMARK 3 SOLVENT ATOMS : 189 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.23 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.66270 REMARK 3 B22 (A**2) : 0.26230 REMARK 3 B33 (A**2) : -1.92500 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.78130 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.230 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.131 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.119 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.133 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.121 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.928 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3938 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 5381 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1273 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 64 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 641 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3938 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 506 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4532 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 0.95 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.41 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 15.18 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5TKD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-OCT-16. REMARK 100 THE DEPOSITION ID IS D_1000224403. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-JUN-11 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47129 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.920 REMARK 200 RESOLUTION RANGE LOW (A) : 47.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07700 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.92 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4WOV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 6.5, VAPOR DIFFUSION, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 32.85100 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -52.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 -28.49083 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 69.05550 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 572 REMARK 465 HIS A 573 REMARK 465 MET A 574 REMARK 465 ASN A 575 REMARK 465 LEU A 576 REMARK 465 SER A 577 REMARK 465 GLN A 578 REMARK 465 LEU A 579 REMARK 465 SER A 580 REMARK 465 VAL A 610 REMARK 465 GLU A 611 REMARK 465 GLY A 612 REMARK 465 SER A 613 REMARK 465 GLY A 614 REMARK 465 ASP A 615 REMARK 465 PRO A 616 REMARK 465 GLU A 617 REMARK 465 GLU A 618 REMARK 465 GLY A 619 REMARK 465 LYS A 620 REMARK 465 MET A 621 REMARK 465 ASP A 622 REMARK 465 ASP A 623 REMARK 465 GLU A 624 REMARK 465 ASP A 625 REMARK 465 PRO A 626 REMARK 465 LEU A 627 REMARK 465 VAL A 628 REMARK 465 PRO A 629 REMARK 465 GLY A 630 REMARK 465 ARG A 631 REMARK 465 ASP A 632 REMARK 465 ARG A 633 REMARK 465 GLY A 634 REMARK 465 GLN A 635 REMARK 465 GLU A 636 REMARK 465 GLY A 786 REMARK 465 GLY A 787 REMARK 465 ALA A 788 REMARK 465 ASN A 789 REMARK 465 SER A 790 REMARK 465 LEU A 791 REMARK 465 GLN A 816 REMARK 465 SER A 817 REMARK 465 CYS A 838 REMARK 465 PRO A 839 REMARK 465 GLN A 840 REMARK 465 THR A 867 REMARK 465 ARG A 868 REMARK 465 LEU A 869 REMARK 465 GLY B 572 REMARK 465 HIS B 573 REMARK 465 MET B 574 REMARK 465 ASN B 575 REMARK 465 LEU B 576 REMARK 465 SER B 577 REMARK 465 GLN B 578 REMARK 465 LEU B 579 REMARK 465 SER B 580 REMARK 465 VAL B 610 REMARK 465 GLU B 611 REMARK 465 GLY B 612 REMARK 465 SER B 613 REMARK 465 GLY B 614 REMARK 465 ASP B 615 REMARK 465 PRO B 616 REMARK 465 GLU B 617 REMARK 465 GLU B 618 REMARK 465 GLY B 619 REMARK 465 LYS B 620 REMARK 465 MET B 621 REMARK 465 ASP B 622 REMARK 465 ASP B 623 REMARK 465 GLU B 624 REMARK 465 ASP B 625 REMARK 465 PRO B 626 REMARK 465 LEU B 627 REMARK 465 VAL B 628 REMARK 465 PRO B 629 REMARK 465 GLY B 630 REMARK 465 ARG B 631 REMARK 465 ASP B 632 REMARK 465 ARG B 633 REMARK 465 GLY B 634 REMARK 465 GLN B 635 REMARK 465 GLU B 749 REMARK 465 GLY B 750 REMARK 465 THR B 751 REMARK 465 GLY B 786 REMARK 465 GLY B 787 REMARK 465 ALA B 788 REMARK 465 ASN B 789 REMARK 465 SER B 790 REMARK 465 LEU B 791 REMARK 465 GLN B 816 REMARK 465 SER B 817 REMARK 465 CYS B 838 REMARK 465 PRO B 839 REMARK 465 GLN B 840 REMARK 465 ARG B 868 REMARK 465 LEU B 869 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 586 CG CD OE1 NE2 REMARK 470 LYS A 587 CG CD CE NZ REMARK 470 GLU A 588 CG CD OE1 OE2 REMARK 470 ARG A 609 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 637 CG CD1 CD2 REMARK 470 ARG A 638 CZ NH1 NH2 REMARK 470 GLU A 657 CG CD OE1 OE2 REMARK 470 GLN A 664 CG CD OE1 NE2 REMARK 470 ARG A 701 NE CZ NH1 NH2 REMARK 470 ARG A 703 NE CZ NH1 NH2 REMARK 470 GLN A 716 CD OE1 NE2 REMARK 470 ASN A 729 CG OD1 ND2 REMARK 470 GLU A 749 CG CD OE1 OE2 REMARK 470 GLU A 770 CD OE1 OE2 REMARK 470 LYS A 797 NZ REMARK 470 GLU A 812 CD OE1 OE2 REMARK 470 ARG A 818 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 822 CD OE1 OE2 REMARK 470 SER A 837 OG REMARK 470 GLU A 852 CG CD OE1 OE2 REMARK 470 GLN A 855 CG CD OE1 NE2 REMARK 470 ARG A 860 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 863 CG CD1 CD2 REMARK 470 ARG A 864 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 865 CG OD1 OD2 REMARK 470 ARG B 583 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 587 CG CD CE NZ REMARK 470 ARG B 609 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 657 CG CD OE1 OE2 REMARK 470 GLN B 664 CG CD OE1 NE2 REMARK 470 ARG B 703 CG CD NE CZ NH1 NH2 REMARK 470 HIS B 705 CG ND1 CD2 CE1 NE2 REMARK 470 GLN B 716 CG CD OE1 NE2 REMARK 470 SER B 720 OG REMARK 470 LEU B 747 CG CD1 CD2 REMARK 470 GLU B 770 CD OE1 OE2 REMARK 470 GLU B 774 OE1 OE2 REMARK 470 LYS B 797 NZ REMARK 470 GLU B 812 CD OE1 OE2 REMARK 470 LEU B 815 CG CD1 CD2 REMARK 470 ARG B 818 CG CD NE CZ NH1 NH2 REMARK 470 SER B 821 OG REMARK 470 GLU B 822 CG CD OE1 OE2 REMARK 470 HIS B 825 CG ND1 CD2 CE1 NE2 REMARK 470 SER B 837 OG REMARK 470 LEU B 841 CG CD1 CD2 REMARK 470 GLN B 855 CG CD OE1 NE2 REMARK 470 ARG B 860 NE CZ NH1 NH2 REMARK 470 ARG B 864 NE CZ NH1 NH2 REMARK 470 ASP B 865 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 592 -143.84 -110.89 REMARK 500 ASN A 734 49.07 -150.76 REMARK 500 LEU A 849 46.53 -96.25 REMARK 500 LEU B 592 -144.69 -110.96 REMARK 500 ASN B 734 47.66 -150.05 REMARK 500 LEU B 849 46.07 -94.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 7GL A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 7GL B 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 903 DBREF 5TKD A 575 869 UNP P29597 TYK2_HUMAN 575 869 DBREF 5TKD B 575 869 UNP P29597 TYK2_HUMAN 575 869 SEQADV 5TKD GLY A 572 UNP P29597 EXPRESSION TAG SEQADV 5TKD HIS A 573 UNP P29597 EXPRESSION TAG SEQADV 5TKD MET A 574 UNP P29597 EXPRESSION TAG SEQADV 5TKD GLY B 572 UNP P29597 EXPRESSION TAG SEQADV 5TKD HIS B 573 UNP P29597 EXPRESSION TAG SEQADV 5TKD MET B 574 UNP P29597 EXPRESSION TAG SEQRES 1 A 298 GLY HIS MET ASN LEU SER GLN LEU SER PHE HIS ARG VAL SEQRES 2 A 298 ASP GLN LYS GLU ILE THR GLN LEU SER HIS LEU GLY GLN SEQRES 3 A 298 GLY THR ARG THR ASN VAL TYR GLU GLY ARG LEU ARG VAL SEQRES 4 A 298 GLU GLY SER GLY ASP PRO GLU GLU GLY LYS MET ASP ASP SEQRES 5 A 298 GLU ASP PRO LEU VAL PRO GLY ARG ASP ARG GLY GLN GLU SEQRES 6 A 298 LEU ARG VAL VAL LEU LYS VAL LEU ASP PRO SER HIS HIS SEQRES 7 A 298 ASP ILE ALA LEU ALA PHE TYR GLU THR ALA SER LEU MET SEQRES 8 A 298 SER GLN VAL SER HIS THR HIS LEU ALA PHE VAL HIS GLY SEQRES 9 A 298 VAL CYS VAL ARG GLY PRO GLU ASN ILE MET VAL THR GLU SEQRES 10 A 298 TYR VAL GLU HIS GLY PRO LEU ASP VAL TRP LEU ARG ARG SEQRES 11 A 298 GLU ARG GLY HIS VAL PRO MET ALA TRP LYS MET VAL VAL SEQRES 12 A 298 ALA GLN GLN LEU ALA SER ALA LEU SER TYR LEU GLU ASN SEQRES 13 A 298 LYS ASN LEU VAL HIS GLY ASN VAL CYS GLY ARG ASN ILE SEQRES 14 A 298 LEU LEU ALA ARG LEU GLY LEU ALA GLU GLY THR SER PRO SEQRES 15 A 298 PHE ILE LYS LEU SER ASP PRO GLY VAL GLY LEU GLY ALA SEQRES 16 A 298 LEU SER ARG GLU GLU ARG VAL GLU ARG ILE PRO TRP LEU SEQRES 17 A 298 ALA PRO GLU CYS LEU PRO GLY GLY ALA ASN SER LEU SER SEQRES 18 A 298 THR ALA MET ASP LYS TRP GLY PHE GLY ALA THR LEU LEU SEQRES 19 A 298 GLU ILE CYS PHE ASP GLY GLU ALA PRO LEU GLN SER ARG SEQRES 20 A 298 SER PRO SER GLU LYS GLU HIS PHE TYR GLN ARG GLN HIS SEQRES 21 A 298 ARG LEU PRO GLU PRO SER CYS PRO GLN LEU ALA THR LEU SEQRES 22 A 298 THR SER GLN CYS LEU THR TYR GLU PRO THR GLN ARG PRO SEQRES 23 A 298 SER PHE ARG THR ILE LEU ARG ASP LEU THR ARG LEU SEQRES 1 B 298 GLY HIS MET ASN LEU SER GLN LEU SER PHE HIS ARG VAL SEQRES 2 B 298 ASP GLN LYS GLU ILE THR GLN LEU SER HIS LEU GLY GLN SEQRES 3 B 298 GLY THR ARG THR ASN VAL TYR GLU GLY ARG LEU ARG VAL SEQRES 4 B 298 GLU GLY SER GLY ASP PRO GLU GLU GLY LYS MET ASP ASP SEQRES 5 B 298 GLU ASP PRO LEU VAL PRO GLY ARG ASP ARG GLY GLN GLU SEQRES 6 B 298 LEU ARG VAL VAL LEU LYS VAL LEU ASP PRO SER HIS HIS SEQRES 7 B 298 ASP ILE ALA LEU ALA PHE TYR GLU THR ALA SER LEU MET SEQRES 8 B 298 SER GLN VAL SER HIS THR HIS LEU ALA PHE VAL HIS GLY SEQRES 9 B 298 VAL CYS VAL ARG GLY PRO GLU ASN ILE MET VAL THR GLU SEQRES 10 B 298 TYR VAL GLU HIS GLY PRO LEU ASP VAL TRP LEU ARG ARG SEQRES 11 B 298 GLU ARG GLY HIS VAL PRO MET ALA TRP LYS MET VAL VAL SEQRES 12 B 298 ALA GLN GLN LEU ALA SER ALA LEU SER TYR LEU GLU ASN SEQRES 13 B 298 LYS ASN LEU VAL HIS GLY ASN VAL CYS GLY ARG ASN ILE SEQRES 14 B 298 LEU LEU ALA ARG LEU GLY LEU ALA GLU GLY THR SER PRO SEQRES 15 B 298 PHE ILE LYS LEU SER ASP PRO GLY VAL GLY LEU GLY ALA SEQRES 16 B 298 LEU SER ARG GLU GLU ARG VAL GLU ARG ILE PRO TRP LEU SEQRES 17 B 298 ALA PRO GLU CYS LEU PRO GLY GLY ALA ASN SER LEU SER SEQRES 18 B 298 THR ALA MET ASP LYS TRP GLY PHE GLY ALA THR LEU LEU SEQRES 19 B 298 GLU ILE CYS PHE ASP GLY GLU ALA PRO LEU GLN SER ARG SEQRES 20 B 298 SER PRO SER GLU LYS GLU HIS PHE TYR GLN ARG GLN HIS SEQRES 21 B 298 ARG LEU PRO GLU PRO SER CYS PRO GLN LEU ALA THR LEU SEQRES 22 B 298 THR SER GLN CYS LEU THR TYR GLU PRO THR GLN ARG PRO SEQRES 23 B 298 SER PHE ARG THR ILE LEU ARG ASP LEU THR ARG LEU HET 7GL A 901 41 HET SO4 A 902 5 HET 7GL B 901 41 HET SO4 B 902 5 HET SO4 B 903 5 HETNAM 7GL 6-[(3,5-DIMETHYLPHENYL)AMINO]-8-(METHYLAMINO)IMIDAZO[1, HETNAM 2 7GL 2-B]PYRIDAZINE-3-CARBOXAMIDE HETNAM SO4 SULFATE ION FORMUL 3 7GL 2(C16 H18 N6 O) FORMUL 4 SO4 3(O4 S 2-) FORMUL 8 HOH *189(H2 O) HELIX 1 AA1 ASP A 585 LYS A 587 5 3 HELIX 2 AA2 HIS A 648 GLN A 664 1 17 HELIX 3 AA3 PRO A 694 GLU A 702 1 9 HELIX 4 AA4 PRO A 707 LYS A 728 1 22 HELIX 5 AA5 CYS A 736 ARG A 738 5 3 HELIX 6 AA6 GLY A 763 LEU A 767 5 5 HELIX 7 AA7 SER A 768 ARG A 775 1 8 HELIX 8 AA8 ALA A 780 LEU A 784 5 5 HELIX 9 AA9 THR A 793 PHE A 809 1 17 HELIX 10 AB1 SER A 819 ARG A 829 1 11 HELIX 11 AB2 ALA A 842 LEU A 849 1 8 HELIX 12 AB3 GLU A 852 ARG A 856 5 5 HELIX 13 AB4 SER A 858 LEU A 866 1 9 HELIX 14 AB5 ASP B 585 LYS B 587 5 3 HELIX 15 AB6 HIS B 648 GLN B 664 1 17 HELIX 16 AB7 PRO B 694 GLU B 702 1 9 HELIX 17 AB8 PRO B 707 LYS B 728 1 22 HELIX 18 AB9 CYS B 736 ARG B 738 5 3 HELIX 19 AC1 GLY B 763 LEU B 767 5 5 HELIX 20 AC2 SER B 768 ARG B 775 1 8 HELIX 21 AC3 ALA B 780 LEU B 784 5 5 HELIX 22 AC4 THR B 793 PHE B 809 1 17 HELIX 23 AC5 SER B 819 ARG B 829 1 11 HELIX 24 AC6 ALA B 842 LEU B 849 1 8 HELIX 25 AC7 GLU B 852 ARG B 856 5 5 HELIX 26 AC8 SER B 858 THR B 867 1 10 SHEET 1 AA1 5 ILE A 589 GLY A 598 0 SHEET 2 AA1 5 THR A 601 LEU A 608 -1 O VAL A 603 N LEU A 595 SHEET 3 AA1 5 ARG A 638 LEU A 644 -1 O VAL A 643 N ASN A 602 SHEET 4 AA1 5 GLU A 682 GLU A 688 -1 O ASN A 683 N LEU A 644 SHEET 5 AA1 5 VAL A 673 ARG A 679 -1 N GLY A 675 O VAL A 686 SHEET 1 AA2 2 ILE A 740 ARG A 744 0 SHEET 2 AA2 2 PHE A 754 LEU A 757 -1 O LYS A 756 N LEU A 741 SHEET 1 AA3 5 ILE B 589 GLY B 598 0 SHEET 2 AA3 5 THR B 601 LEU B 608 -1 O VAL B 603 N LEU B 595 SHEET 3 AA3 5 LEU B 637 LEU B 644 -1 O VAL B 643 N ASN B 602 SHEET 4 AA3 5 GLU B 682 GLU B 688 -1 O ASN B 683 N LEU B 644 SHEET 5 AA3 5 VAL B 673 ARG B 679 -1 N ARG B 679 O GLU B 682 SHEET 1 AA4 2 ILE B 740 ARG B 744 0 SHEET 2 AA4 2 PHE B 754 LEU B 757 -1 O LYS B 756 N LEU B 741 CISPEP 1 ILE A 776 PRO A 777 0 10.90 CISPEP 2 ILE B 776 PRO B 777 0 10.34 SITE 1 AC1 15 LEU A 595 VAL A 603 VAL A 640 LYS A 642 SITE 2 AC1 15 GLU A 688 TYR A 689 VAL A 690 GLU A 691 SITE 3 AC1 15 GLY A 693 PRO A 694 ARG A 738 LEU A 741 SITE 4 AC1 15 HOH A1017 HOH A1042 HOH A1048 SITE 1 AC2 4 PRO A 814 LEU A 815 ARG B 829 HIS B 831 SITE 1 AC3 14 LEU B 595 VAL B 640 LYS B 642 GLU B 688 SITE 2 AC3 14 TYR B 689 VAL B 690 GLU B 691 GLY B 693 SITE 3 AC3 14 PRO B 694 ARG B 738 LEU B 741 HOH B1043 SITE 4 AC3 14 HOH B1058 HOH B1069 SITE 1 AC4 8 ARG A 744 ARG B 744 LEU B 745 GLY B 746 SITE 2 AC4 8 LEU B 747 ALA B 748 HOH B1017 HOH B1082 SITE 1 AC5 3 ARG A 829 HIS A 831 LEU B 815 CRYST1 69.599 65.702 74.702 90.00 112.42 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014368 0.000000 0.005928 0.00000 SCALE2 0.000000 0.015220 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014481 0.00000