PDB Short entry for 5UND HEADER TRANSCRIPTION/DNA 30-JAN-17 5UND TITLE CRYSTAL STRUCTURE OF CTCF(ZNF 4-10) WITH 28-MER DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REPRESSOR CTCF; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 11-ZINC FINGER PROTEIN,CCCTC-BINDING FACTOR,CTCFL PARALOG; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (26-MER); COMPND 8 CHAIN: C, E; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: DNA (26-MER); COMPND 12 CHAIN: D, F; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CTCF; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 15 ORGANISM_TAXID: 9606 KEYWDS TRANSCRIPTION FACTOR ZINC FINGER PROTEIN-DNA BINDING KEYWDS 2 INSULATOR/CHROMATIN ARCHITECTURE, TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.R.HORTON,X.CHENG REVDAT 5 23-MAR-22 5UND 1 REMARK REVDAT 4 20-SEP-17 5UND 1 REMARK REVDAT 3 14-JUN-17 5UND 1 JRNL REVDAT 2 07-JUN-17 5UND 1 JRNL REVDAT 1 24-MAY-17 5UND 0 JRNL AUTH H.HASHIMOTO,D.WANG,J.R.HORTON,X.ZHANG,V.G.CORCES,X.CHENG JRNL TITL STRUCTURAL BASIS FOR THE VERSATILE AND METHYLATION-DEPENDENT JRNL TITL 2 BINDING OF CTCF TO DNA. JRNL REF MOL. CELL V. 66 711 2017 JRNL REFN ISSN 1097-4164 JRNL PMID 28529057 JRNL DOI 10.1016/J.MOLCEL.2017.05.004 REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.61 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 64813 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 3251 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.6157 - 7.2272 0.98 2653 150 0.1698 0.1893 REMARK 3 2 7.2272 - 5.7450 1.00 2687 142 0.2085 0.2078 REMARK 3 3 5.7450 - 5.0213 1.00 2679 146 0.1796 0.2132 REMARK 3 4 5.0213 - 4.5633 1.00 2712 138 0.1896 0.2430 REMARK 3 5 4.5633 - 4.2368 1.00 2684 142 0.1846 0.2218 REMARK 3 6 4.2368 - 3.9874 1.00 2744 141 0.1805 0.2045 REMARK 3 7 3.9874 - 3.7880 1.00 2664 151 0.1938 0.2497 REMARK 3 8 3.7880 - 3.6233 1.00 2709 142 0.2090 0.2201 REMARK 3 9 3.6233 - 3.4839 1.00 2660 140 0.2088 0.2215 REMARK 3 10 3.4839 - 3.3638 0.99 2698 130 0.2245 0.2470 REMARK 3 11 3.3638 - 3.2587 0.98 2683 146 0.2195 0.2623 REMARK 3 12 3.2587 - 3.1656 0.99 2657 137 0.2472 0.2522 REMARK 3 13 3.1656 - 3.0823 1.00 2673 145 0.2558 0.2894 REMARK 3 14 3.0823 - 3.0072 1.00 2710 132 0.2546 0.3241 REMARK 3 15 3.0072 - 2.9388 1.00 2739 133 0.2600 0.2514 REMARK 3 16 2.9388 - 2.8763 1.00 2704 144 0.2709 0.2573 REMARK 3 17 2.8763 - 2.8188 1.00 2664 136 0.2618 0.3518 REMARK 3 18 2.8188 - 2.7657 1.00 2691 152 0.2639 0.2724 REMARK 3 19 2.7657 - 2.7163 1.00 2728 152 0.2754 0.3040 REMARK 3 20 2.7163 - 2.6703 0.99 2672 134 0.3065 0.3342 REMARK 3 21 2.6703 - 2.6272 0.99 2625 133 0.3161 0.3116 REMARK 3 22 2.6272 - 2.5868 0.98 2620 153 0.3262 0.3547 REMARK 3 23 2.5868 - 2.5488 0.91 2506 132 0.3526 0.4081 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.350 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.590 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 55.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 4998 REMARK 3 ANGLE : 0.440 7109 REMARK 3 CHIRALITY : 0.031 765 REMARK 3 PLANARITY : 0.002 552 REMARK 3 DIHEDRAL : 22.162 2580 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 22 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 348:390 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.8772 5.4681 12.0496 REMARK 3 T TENSOR REMARK 3 T11: 0.5345 T22: 0.7801 REMARK 3 T33: 1.4363 T12: -0.1357 REMARK 3 T13: -0.2158 T23: -0.1371 REMARK 3 L TENSOR REMARK 3 L11: 0.1731 L22: 0.5290 REMARK 3 L33: 1.0076 L12: -0.1293 REMARK 3 L13: -0.4004 L23: 0.3265 REMARK 3 S TENSOR REMARK 3 S11: -0.2573 S12: 0.7252 S13: -0.1007 REMARK 3 S21: -0.0649 S22: -0.3032 S23: 1.1576 REMARK 3 S31: 0.1352 S32: -0.7966 S33: -0.6106 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 391:429 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.2452 19.4022 15.9470 REMARK 3 T TENSOR REMARK 3 T11: 0.3007 T22: 0.2790 REMARK 3 T33: 0.4907 T12: -0.0295 REMARK 3 T13: -0.0416 T23: -0.0399 REMARK 3 L TENSOR REMARK 3 L11: 0.1354 L22: 0.3734 REMARK 3 L33: 0.5039 L12: 0.1735 REMARK 3 L13: 0.1199 L23: 0.2849 REMARK 3 S TENSOR REMARK 3 S11: -0.1242 S12: 0.3947 S13: 0.4212 REMARK 3 S21: -0.0337 S22: -0.0695 S23: 0.3598 REMARK 3 S31: 0.1475 S32: 0.0558 S33: -0.0231 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 430:459 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.2962 2.3379 6.8469 REMARK 3 T TENSOR REMARK 3 T11: 0.6999 T22: 0.3954 REMARK 3 T33: 0.2988 T12: 0.0001 REMARK 3 T13: -0.0562 T23: -0.1408 REMARK 3 L TENSOR REMARK 3 L11: 0.2449 L22: 0.0108 REMARK 3 L33: 0.0400 L12: 0.0063 REMARK 3 L13: -0.1443 L23: 0.0611 REMARK 3 S TENSOR REMARK 3 S11: -0.0249 S12: 0.1930 S13: 0.1994 REMARK 3 S21: 0.4646 S22: -0.1601 S23: 0.3511 REMARK 3 S31: 1.0051 S32: 0.2766 S33: -0.0338 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN A AND RESID 460:491 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.3317 -3.3043 -13.7833 REMARK 3 T TENSOR REMARK 3 T11: 0.5878 T22: 0.2792 REMARK 3 T33: 0.4093 T12: -0.0925 REMARK 3 T13: -0.0617 T23: -0.2089 REMARK 3 L TENSOR REMARK 3 L11: 0.7850 L22: 1.8733 REMARK 3 L33: 2.3041 L12: -0.4026 REMARK 3 L13: 0.3616 L23: -1.9016 REMARK 3 S TENSOR REMARK 3 S11: 0.0906 S12: 0.0891 S13: 0.1320 REMARK 3 S21: 0.4128 S22: -0.8197 S23: -0.4476 REMARK 3 S31: -0.2601 S32: 0.2440 S33: -0.6403 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN A AND RESID 492:518 ) REMARK 3 ORIGIN FOR THE GROUP (A): 66.1859 -1.8049 -6.9405 REMARK 3 T TENSOR REMARK 3 T11: 0.9430 T22: 1.2969 REMARK 3 T33: 1.3695 T12: -0.1716 REMARK 3 T13: -0.3358 T23: -0.3621 REMARK 3 L TENSOR REMARK 3 L11: 0.0038 L22: 0.0265 REMARK 3 L33: -0.0179 L12: 0.0051 REMARK 3 L13: 0.0191 L23: -0.0146 REMARK 3 S TENSOR REMARK 3 S11: -0.0625 S12: -0.1992 S13: 0.3945 REMARK 3 S21: 0.3609 S22: 0.7903 S23: -0.4400 REMARK 3 S31: 0.0736 S32: 0.4382 S33: 0.0060 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ( CHAIN C AND RESID 1:10 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.8343 9.6656 16.3895 REMARK 3 T TENSOR REMARK 3 T11: 0.5764 T22: 0.7725 REMARK 3 T33: 1.1317 T12: -0.0061 REMARK 3 T13: 0.0792 T23: -0.0615 REMARK 3 L TENSOR REMARK 3 L11: 0.0906 L22: 0.0991 REMARK 3 L33: 0.0669 L12: 0.0897 REMARK 3 L13: 0.0969 L23: -0.0124 REMARK 3 S TENSOR REMARK 3 S11: 0.0498 S12: 0.0602 S13: 0.1985 REMARK 3 S21: -0.1472 S22: 0.2786 S23: -0.1042 REMARK 3 S31: 0.2849 S32: -0.7024 S33: -0.0002 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: ( CHAIN C AND RESID 11:15 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.3144 16.7499 -0.6635 REMARK 3 T TENSOR REMARK 3 T11: 0.8235 T22: 0.9278 REMARK 3 T33: 0.4805 T12: -0.1307 REMARK 3 T13: -0.1808 T23: 0.1125 REMARK 3 L TENSOR REMARK 3 L11: 0.2707 L22: 0.1831 REMARK 3 L33: 0.0719 L12: -0.2371 REMARK 3 L13: -0.1416 L23: 0.1187 REMARK 3 S TENSOR REMARK 3 S11: -0.4183 S12: 0.4153 S13: -0.1873 REMARK 3 S21: -0.5620 S22: -0.3926 S23: -0.0747 REMARK 3 S31: 0.1113 S32: -0.0978 S33: -0.0263 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: ( CHAIN C AND RESID 16:26 ) REMARK 3 ORIGIN FOR THE GROUP (A): 55.7995 13.1384 -12.4326 REMARK 3 T TENSOR REMARK 3 T11: 1.2376 T22: 1.8770 REMARK 3 T33: 1.7159 T12: -0.2743 REMARK 3 T13: 0.4319 T23: 0.0788 REMARK 3 L TENSOR REMARK 3 L11: 0.0187 L22: -0.0702 REMARK 3 L33: 0.0287 L12: -0.0219 REMARK 3 L13: -0.0923 L23: 0.0448 REMARK 3 S TENSOR REMARK 3 S11: -0.6580 S12: 0.7697 S13: 0.4753 REMARK 3 S21: -0.4640 S22: 0.1316 S23: -0.3605 REMARK 3 S31: 0.2159 S32: 0.4235 S33: -0.0000 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: ( CHAIN D AND RESID 3:12 ) REMARK 3 ORIGIN FOR THE GROUP (A): 56.8329 13.1339 -13.5299 REMARK 3 T TENSOR REMARK 3 T11: 1.4576 T22: 1.9342 REMARK 3 T33: 2.0068 T12: -0.0872 REMARK 3 T13: 0.4653 T23: 0.2328 REMARK 3 L TENSOR REMARK 3 L11: 0.0555 L22: -0.0087 REMARK 3 L33: 0.0756 L12: -0.0111 REMARK 3 L13: 0.0387 L23: -0.0786 REMARK 3 S TENSOR REMARK 3 S11: 0.5989 S12: -0.2867 S13: 0.5317 REMARK 3 S21: -0.1379 S22: 0.7086 S23: -0.4439 REMARK 3 S31: 0.3024 S32: -0.0073 S33: -0.0002 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: ( CHAIN D AND RESID 13:28 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.1945 10.0589 11.0149 REMARK 3 T TENSOR REMARK 3 T11: 0.4115 T22: 0.5527 REMARK 3 T33: 0.4896 T12: -0.0514 REMARK 3 T13: -0.0008 T23: -0.0635 REMARK 3 L TENSOR REMARK 3 L11: 0.5006 L22: 0.9405 REMARK 3 L33: 0.1886 L12: 0.1349 REMARK 3 L13: 0.4730 L23: 0.3505 REMARK 3 S TENSOR REMARK 3 S11: -0.2832 S12: 0.1994 S13: -0.1556 REMARK 3 S21: -0.4096 S22: 0.0489 S23: 0.3279 REMARK 3 S31: -0.1515 S32: -0.1155 S33: -0.0116 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: ( CHAIN B AND RESID 348:374 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.7408 -0.9567 37.5569 REMARK 3 T TENSOR REMARK 3 T11: 0.3534 T22: 2.0475 REMARK 3 T33: 1.6225 T12: 1.0882 REMARK 3 T13: -0.1484 T23: 1.0483 REMARK 3 L TENSOR REMARK 3 L11: 0.0228 L22: -0.0047 REMARK 3 L33: 0.0108 L12: -0.0282 REMARK 3 L13: -0.0157 L23: 0.0068 REMARK 3 S TENSOR REMARK 3 S11: 0.0972 S12: -0.1215 S13: -0.4328 REMARK 3 S21: 0.4483 S22: 0.2494 S23: -0.2637 REMARK 3 S31: 0.0531 S32: 0.0521 S33: 0.1218 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: ( CHAIN B AND RESID 375:390 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.6799 16.3294 46.0000 REMARK 3 T TENSOR REMARK 3 T11: 0.9974 T22: 1.6123 REMARK 3 T33: 1.5477 T12: 0.0919 REMARK 3 T13: -0.8703 T23: 0.0248 REMARK 3 L TENSOR REMARK 3 L11: 0.3184 L22: 0.1754 REMARK 3 L33: 0.3541 L12: 0.2214 REMARK 3 L13: -0.2652 L23: -0.2216 REMARK 3 S TENSOR REMARK 3 S11: -0.2425 S12: -0.0761 S13: -0.0058 REMARK 3 S21: 0.1932 S22: -0.5066 S23: -0.2948 REMARK 3 S31: -0.2899 S32: 0.3769 S33: -0.5512 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: ( CHAIN B AND RESID 391:429 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.8211 17.8010 33.3463 REMARK 3 T TENSOR REMARK 3 T11: 0.3144 T22: 0.4249 REMARK 3 T33: 0.3383 T12: -0.0269 REMARK 3 T13: -0.0353 T23: 0.1210 REMARK 3 L TENSOR REMARK 3 L11: -0.0010 L22: 0.6832 REMARK 3 L33: 0.3169 L12: -0.1436 REMARK 3 L13: 0.1069 L23: -0.3123 REMARK 3 S TENSOR REMARK 3 S11: 0.0104 S12: -0.2758 S13: -0.0849 REMARK 3 S21: -0.2136 S22: -0.3789 S23: -0.3896 REMARK 3 S31: 0.0088 S32: 0.2022 S33: -0.1236 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: ( CHAIN B AND RESID 430:478 ) REMARK 3 ORIGIN FOR THE GROUP (A): -37.7010 -1.5880 47.9895 REMARK 3 T TENSOR REMARK 3 T11: 0.6131 T22: 0.2877 REMARK 3 T33: 0.3338 T12: 0.1199 REMARK 3 T13: 0.0659 T23: 0.0945 REMARK 3 L TENSOR REMARK 3 L11: 0.0638 L22: 0.0306 REMARK 3 L33: 0.1337 L12: 0.3739 REMARK 3 L13: -0.0420 L23: -0.4838 REMARK 3 S TENSOR REMARK 3 S11: -0.1105 S12: -0.0601 S13: -0.0026 REMARK 3 S21: -0.2049 S22: -0.2434 S23: -0.0478 REMARK 3 S31: 0.2784 S32: 0.1572 S33: -0.5087 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: ( CHAIN B AND RESID 479:492 ) REMARK 3 ORIGIN FOR THE GROUP (A): -48.6840 -5.9940 58.7154 REMARK 3 T TENSOR REMARK 3 T11: 0.6587 T22: 0.4857 REMARK 3 T33: 0.3322 T12: 0.1433 REMARK 3 T13: -0.1075 T23: 0.0277 REMARK 3 L TENSOR REMARK 3 L11: 0.0774 L22: 0.4523 REMARK 3 L33: 0.0986 L12: -0.0014 REMARK 3 L13: 0.1010 L23: 0.1006 REMARK 3 S TENSOR REMARK 3 S11: -0.0783 S12: 0.1444 S13: 0.3058 REMARK 3 S21: -0.9994 S22: -0.4259 S23: 0.0239 REMARK 3 S31: -0.1088 S32: -0.3874 S33: -0.0299 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: ( CHAIN E AND RESID 1:10 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.7529 8.6984 34.6286 REMARK 3 T TENSOR REMARK 3 T11: 0.3804 T22: 1.1828 REMARK 3 T33: 1.1295 T12: 0.2346 REMARK 3 T13: 0.1626 T23: 0.3094 REMARK 3 L TENSOR REMARK 3 L11: 0.0976 L22: 1.3257 REMARK 3 L33: 0.4594 L12: 0.3640 REMARK 3 L13: 0.1985 L23: 0.8396 REMARK 3 S TENSOR REMARK 3 S11: 0.6485 S12: 0.1754 S13: 0.4798 REMARK 3 S21: 0.4698 S22: 0.3435 S23: -0.3705 REMARK 3 S31: 1.0082 S32: 0.3965 S33: 0.3588 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: ( CHAIN E AND RESID 11:20 ) REMARK 3 ORIGIN FOR THE GROUP (A): -43.5006 12.4469 49.6204 REMARK 3 T TENSOR REMARK 3 T11: 0.9178 T22: 0.8502 REMARK 3 T33: 0.8060 T12: 0.1223 REMARK 3 T13: 0.3234 T23: 0.1483 REMARK 3 L TENSOR REMARK 3 L11: 0.1631 L22: 0.5014 REMARK 3 L33: 0.2009 L12: 0.2963 REMARK 3 L13: 0.1610 L23: 0.1495 REMARK 3 S TENSOR REMARK 3 S11: -0.5126 S12: -1.2375 S13: -0.2079 REMARK 3 S21: 0.8625 S22: 0.2554 S23: 1.2094 REMARK 3 S31: -0.3016 S32: -0.0761 S33: -0.0838 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: ( CHAIN E AND RESID 21:25 ) REMARK 3 ORIGIN FOR THE GROUP (A): -66.5034 12.1063 63.8413 REMARK 3 T TENSOR REMARK 3 T11: 2.2305 T22: 2.8718 REMARK 3 T33: 2.6423 T12: 0.0983 REMARK 3 T13: 0.9948 T23: -0.0015 REMARK 3 L TENSOR REMARK 3 L11: 0.0044 L22: 0.0291 REMARK 3 L33: 0.0184 L12: 0.0113 REMARK 3 L13: -0.0063 L23: -0.0136 REMARK 3 S TENSOR REMARK 3 S11: 0.1105 S12: -0.0896 S13: -0.2440 REMARK 3 S21: -0.0861 S22: -0.5262 S23: 0.0028 REMARK 3 S31: 0.1204 S32: 0.2792 S33: 0.0000 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: ( CHAIN E AND RESID 26:26 ) REMARK 3 ORIGIN FOR THE GROUP (A): -84.2819 5.8598 60.9065 REMARK 3 T TENSOR REMARK 3 T11: 2.5735 T22: 2.5889 REMARK 3 T33: 2.9155 T12: 0.1124 REMARK 3 T13: 0.2400 T23: 0.1341 REMARK 3 L TENSOR REMARK 3 L11: 0.2717 L22: 0.0703 REMARK 3 L33: 0.0439 L12: 0.1380 REMARK 3 L13: 0.0786 L23: 0.0367 REMARK 3 S TENSOR REMARK 3 S11: -0.0199 S12: 0.0102 S13: -0.0179 REMARK 3 S21: -0.0263 S22: -0.0572 S23: 0.0027 REMARK 3 S31: 0.0178 S32: 0.0159 S33: 0.0007 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: ( CHAIN F AND RESID 4:8 ) REMARK 3 ORIGIN FOR THE GROUP (A): -68.2907 8.2194 58.8196 REMARK 3 T TENSOR REMARK 3 T11: 1.8823 T22: 2.7419 REMARK 3 T33: 2.4803 T12: -0.1094 REMARK 3 T13: -0.0296 T23: -0.1679 REMARK 3 L TENSOR REMARK 3 L11: 0.0147 L22: -0.0073 REMARK 3 L33: 0.0034 L12: 0.0041 REMARK 3 L13: -0.0171 L23: -0.0039 REMARK 3 S TENSOR REMARK 3 S11: 0.4416 S12: 0.0131 S13: 0.0020 REMARK 3 S21: -0.0710 S22: 0.1168 S23: -0.1823 REMARK 3 S31: 0.0587 S32: -0.1633 S33: 0.0000 REMARK 3 TLS GROUP : 21 REMARK 3 SELECTION: ( CHAIN F AND RESID 9:13 ) REMARK 3 ORIGIN FOR THE GROUP (A): -49.6940 13.8047 57.0049 REMARK 3 T TENSOR REMARK 3 T11: 1.3711 T22: 1.2642 REMARK 3 T33: 1.4737 T12: 0.4382 REMARK 3 T13: 0.4945 T23: -0.1202 REMARK 3 L TENSOR REMARK 3 L11: 0.0030 L22: 0.0085 REMARK 3 L33: 0.0100 L12: -0.0348 REMARK 3 L13: 0.0090 L23: 0.0121 REMARK 3 S TENSOR REMARK 3 S11: -0.3963 S12: 0.0139 S13: 0.6225 REMARK 3 S21: -0.1336 S22: -0.1754 S23: 0.4357 REMARK 3 S31: -0.1365 S32: 0.1075 S33: 0.0002 REMARK 3 TLS GROUP : 22 REMARK 3 SELECTION: ( CHAIN F AND RESID 14:28 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.9591 8.9225 37.4777 REMARK 3 T TENSOR REMARK 3 T11: 0.2159 T22: 0.6627 REMARK 3 T33: 0.5928 T12: 0.0575 REMARK 3 T13: 0.0504 T23: 0.2974 REMARK 3 L TENSOR REMARK 3 L11: 0.2245 L22: 0.7875 REMARK 3 L33: 0.3971 L12: -0.1461 REMARK 3 L13: -0.1708 L23: 0.1126 REMARK 3 S TENSOR REMARK 3 S11: -0.4259 S12: -0.5532 S13: -0.7872 REMARK 3 S21: 0.4195 S22: -0.2246 S23: -0.3934 REMARK 3 S31: -0.3325 S32: 0.6740 S33: -0.8174 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5UND COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-JAN-17. REMARK 100 THE DEPOSITION ID IS D_1000226132. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33435 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.550 REMARK 200 RESOLUTION RANGE LOW (A) : 34.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.10100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 5.40 REMARK 200 R MERGE FOR SHELL (I) : 0.98600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 5KKQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 28% PEG 2000 MME 100MM BIS-TRIS, PH REMARK 280 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 36.91250 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -85.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 346 REMARK 465 SER A 347 REMARK 465 GLY A 519 REMARK 465 GLU A 520 REMARK 465 LYS A 521 REMARK 465 PRO A 522 REMARK 465 TYR A 523 REMARK 465 ALA A 524 REMARK 465 CYS A 525 REMARK 465 SER A 526 REMARK 465 HIS A 527 REMARK 465 CYS A 528 REMARK 465 ASP A 529 REMARK 465 LYS A 530 REMARK 465 THR A 531 REMARK 465 PHE A 532 REMARK 465 ARG A 533 REMARK 465 GLN A 534 REMARK 465 LYS A 535 REMARK 465 GLN A 536 REMARK 465 LEU A 537 REMARK 465 LEU A 538 REMARK 465 ASP A 539 REMARK 465 MET A 540 REMARK 465 HIS A 541 REMARK 465 PHE A 542 REMARK 465 LYS A 543 REMARK 465 ARG A 544 REMARK 465 TYR A 545 REMARK 465 HIS A 546 REMARK 465 ASP A 547 REMARK 465 DT C 27 REMARK 465 DG C 28 REMARK 465 DC D 1 REMARK 465 DA D 2 REMARK 465 GLY B 346 REMARK 465 SER B 347 REMARK 465 LYS B 493 REMARK 465 ARG B 494 REMARK 465 PHE B 495 REMARK 465 LYS B 496 REMARK 465 CYS B 497 REMARK 465 ASP B 498 REMARK 465 GLN B 499 REMARK 465 CYS B 500 REMARK 465 ASP B 501 REMARK 465 TYR B 502 REMARK 465 ALA B 503 REMARK 465 CYS B 504 REMARK 465 ARG B 505 REMARK 465 GLN B 506 REMARK 465 GLU B 507 REMARK 465 ARG B 508 REMARK 465 HIS B 509 REMARK 465 MET B 510 REMARK 465 ILE B 511 REMARK 465 MET B 512 REMARK 465 HIS B 513 REMARK 465 LYS B 514 REMARK 465 ARG B 515 REMARK 465 THR B 516 REMARK 465 HIS B 517 REMARK 465 THR B 518 REMARK 465 GLY B 519 REMARK 465 GLU B 520 REMARK 465 LYS B 521 REMARK 465 PRO B 522 REMARK 465 TYR B 523 REMARK 465 ALA B 524 REMARK 465 CYS B 525 REMARK 465 SER B 526 REMARK 465 HIS B 527 REMARK 465 CYS B 528 REMARK 465 ASP B 529 REMARK 465 LYS B 530 REMARK 465 THR B 531 REMARK 465 PHE B 532 REMARK 465 ARG B 533 REMARK 465 GLN B 534 REMARK 465 LYS B 535 REMARK 465 GLN B 536 REMARK 465 LEU B 537 REMARK 465 LEU B 538 REMARK 465 ASP B 539 REMARK 465 MET B 540 REMARK 465 HIS B 541 REMARK 465 PHE B 542 REMARK 465 LYS B 543 REMARK 465 ARG B 544 REMARK 465 TYR B 545 REMARK 465 HIS B 546 REMARK 465 ASP B 547 REMARK 465 DT E 27 REMARK 465 DG E 28 REMARK 465 DC F 1 REMARK 465 DA F 2 REMARK 465 DG F 3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 349 CG CD CE NZ REMARK 470 LYS A 352 CG CD CE NZ REMARK 470 ASP A 357 CG OD1 OD2 REMARK 470 VAL A 361 CG1 CG2 REMARK 470 ILE A 370 CG1 CG2 CD1 REMARK 470 SER A 372 OG REMARK 470 SER A 382 OG REMARK 470 LEU A 383 CG CD1 CD2 REMARK 470 ASP A 443 CG OD1 OD2 REMARK 470 LYS A 467 NZ REMARK 470 LYS A 490 CG CD CE NZ REMARK 470 ARG A 494 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 496 CG CD CE NZ REMARK 470 ASP A 498 CG OD1 OD2 REMARK 470 GLN A 499 CG CD OE1 NE2 REMARK 470 ASP A 501 CG OD1 OD2 REMARK 470 ARG A 505 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 507 CG CD OE1 OE2 REMARK 470 ARG A 508 CG CD NE CZ NH1 NH2 REMARK 470 HIS A 509 CG ND1 CD2 CE1 NE2 REMARK 470 ILE A 511 CG1 CG2 CD1 REMARK 470 MET A 512 CG SD CE REMARK 470 LYS A 514 CG CD CE NZ REMARK 470 ARG A 515 CG CD NE CZ NH1 NH2 REMARK 470 THR A 516 OG1 CG2 REMARK 470 DC C 1 O5' REMARK 470 GLU B 348 CG CD OE1 OE2 REMARK 470 LYS B 349 CG CD CE NZ REMARK 470 LYS B 352 CG CD CE NZ REMARK 470 ASP B 357 CG OD1 OD2 REMARK 470 VAL B 363 CG1 CG2 REMARK 470 LEU B 366 CG CD1 CD2 REMARK 470 LYS B 367 CG CD CE NZ REMARK 470 ILE B 370 CG1 CG2 CD1 REMARK 470 LEU B 383 CG CD1 CD2 REMARK 470 ASP B 443 CG OD1 OD2 REMARK 470 LYS B 458 CG CD CE NZ REMARK 470 GLU B 464 CG CD OE1 OE2 REMARK 470 LYS B 467 NZ REMARK 470 ARG B 470 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 487 CE NZ REMARK 470 DC E 1 O5' REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 357 33.32 -99.57 REMARK 500 CYS A 500 -159.20 -83.33 REMARK 500 ASP B 357 32.47 -92.69 REMARK 500 CYS B 384 -167.75 -115.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH C 104 DISTANCE = 7.78 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 353 SG REMARK 620 2 CYS A 356 SG 98.5 REMARK 620 3 HIS A 369 NE2 101.1 62.2 REMARK 620 4 HIS A 373 NE2 152.9 103.4 103.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 602 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 381 SG REMARK 620 2 CYS A 384 SG 136.9 REMARK 620 3 HIS A 397 NE2 111.1 95.8 REMARK 620 4 HIS A 401 NE2 106.0 108.2 87.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 603 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 409 SG REMARK 620 2 CYS A 412 SG 121.1 REMARK 620 3 HIS A 425 NE2 106.6 103.6 REMARK 620 4 HIS A 430 NE2 104.7 114.6 104.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 604 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 439 SG REMARK 620 2 CYS A 442 SG 115.9 REMARK 620 3 HIS A 455 NE2 110.6 101.7 REMARK 620 4 HIS A 460 NE2 104.3 118.1 105.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 605 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 469 SG REMARK 620 2 CYS A 472 SG 124.3 REMARK 620 3 HIS A 485 NE2 119.7 96.8 REMARK 620 4 HIS A 489 NE2 110.6 107.0 93.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 606 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 500 SG REMARK 620 2 HIS A 513 NE2 100.7 REMARK 620 3 HIS A 517 NE2 126.8 129.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 353 SG REMARK 620 2 CYS B 356 SG 117.3 REMARK 620 3 HIS B 369 NE2 97.4 86.5 REMARK 620 4 HIS B 373 NE2 136.5 105.5 92.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 602 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 381 SG REMARK 620 2 CYS B 384 SG 112.8 REMARK 620 3 HIS B 397 NE2 81.6 87.1 REMARK 620 4 HIS B 401 NE2 145.0 95.3 121.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 603 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 409 SG REMARK 620 2 CYS B 412 SG 117.8 REMARK 620 3 HIS B 425 NE2 102.4 108.1 REMARK 620 4 HIS B 430 NE2 106.4 117.6 102.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 604 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 439 SG REMARK 620 2 CYS B 442 SG 119.8 REMARK 620 3 HIS B 455 NE2 104.0 95.6 REMARK 620 4 HIS B 460 NE2 101.3 131.0 99.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 605 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 469 SG REMARK 620 2 CYS B 472 SG 121.6 REMARK 620 3 HIS B 485 NE2 111.3 100.1 REMARK 620 4 HIS B 489 NE2 116.1 104.1 100.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO D 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO D 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 607 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO E 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO F 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO F 102 DBREF 5UND A 348 547 UNP P49711 CTCF_HUMAN 348 547 DBREF 5UND C 1 28 PDB 5UND 5UND 1 28 DBREF 5UND D 1 28 PDB 5UND 5UND 1 28 DBREF 5UND B 348 547 UNP P49711 CTCF_HUMAN 348 547 DBREF 5UND E 1 28 PDB 5UND 5UND 1 28 DBREF 5UND F 1 28 PDB 5UND 5UND 1 28 SEQADV 5UND GLY A 346 UNP P49711 EXPRESSION TAG SEQADV 5UND SER A 347 UNP P49711 EXPRESSION TAG SEQADV 5UND GLY B 346 UNP P49711 EXPRESSION TAG SEQADV 5UND SER B 347 UNP P49711 EXPRESSION TAG SEQRES 1 A 202 GLY SER GLU LYS PRO PHE LYS CYS SER MET CYS ASP TYR SEQRES 2 A 202 ALA SER VAL GLU VAL SER LYS LEU LYS ARG HIS ILE ARG SEQRES 3 A 202 SER HIS THR GLY GLU ARG PRO PHE GLN CYS SER LEU CYS SEQRES 4 A 202 SER TYR ALA SER ARG ASP THR TYR LYS LEU LYS ARG HIS SEQRES 5 A 202 MET ARG THR HIS SER GLY GLU LYS PRO TYR GLU CYS TYR SEQRES 6 A 202 ILE CYS HIS ALA ARG PHE THR GLN SER GLY THR MET LYS SEQRES 7 A 202 MET HIS ILE LEU GLN LYS HIS THR GLU ASN VAL ALA LYS SEQRES 8 A 202 PHE HIS CYS PRO HIS CYS ASP THR VAL ILE ALA ARG LYS SEQRES 9 A 202 SER ASP LEU GLY VAL HIS LEU ARG LYS GLN HIS SER TYR SEQRES 10 A 202 ILE GLU GLN GLY LYS LYS CYS ARG TYR CYS ASP ALA VAL SEQRES 11 A 202 PHE HIS GLU ARG TYR ALA LEU ILE GLN HIS GLN LYS SER SEQRES 12 A 202 HIS LYS ASN GLU LYS ARG PHE LYS CYS ASP GLN CYS ASP SEQRES 13 A 202 TYR ALA CYS ARG GLN GLU ARG HIS MET ILE MET HIS LYS SEQRES 14 A 202 ARG THR HIS THR GLY GLU LYS PRO TYR ALA CYS SER HIS SEQRES 15 A 202 CYS ASP LYS THR PHE ARG GLN LYS GLN LEU LEU ASP MET SEQRES 16 A 202 HIS PHE LYS ARG TYR HIS ASP SEQRES 1 C 28 DC DG DC DC DC DC DC DT DG DC DT DG DG SEQRES 2 C 28 DC DC DT DC DT DG DT DG DG DG DC DA DC SEQRES 3 C 28 DT DG SEQRES 1 D 28 DC DA DG DT DG DC DC DC DA DC DA DG DA SEQRES 2 D 28 DG DG DC DC DA DG DC DA DG DG DG DG DG SEQRES 3 D 28 DC DG SEQRES 1 B 202 GLY SER GLU LYS PRO PHE LYS CYS SER MET CYS ASP TYR SEQRES 2 B 202 ALA SER VAL GLU VAL SER LYS LEU LYS ARG HIS ILE ARG SEQRES 3 B 202 SER HIS THR GLY GLU ARG PRO PHE GLN CYS SER LEU CYS SEQRES 4 B 202 SER TYR ALA SER ARG ASP THR TYR LYS LEU LYS ARG HIS SEQRES 5 B 202 MET ARG THR HIS SER GLY GLU LYS PRO TYR GLU CYS TYR SEQRES 6 B 202 ILE CYS HIS ALA ARG PHE THR GLN SER GLY THR MET LYS SEQRES 7 B 202 MET HIS ILE LEU GLN LYS HIS THR GLU ASN VAL ALA LYS SEQRES 8 B 202 PHE HIS CYS PRO HIS CYS ASP THR VAL ILE ALA ARG LYS SEQRES 9 B 202 SER ASP LEU GLY VAL HIS LEU ARG LYS GLN HIS SER TYR SEQRES 10 B 202 ILE GLU GLN GLY LYS LYS CYS ARG TYR CYS ASP ALA VAL SEQRES 11 B 202 PHE HIS GLU ARG TYR ALA LEU ILE GLN HIS GLN LYS SER SEQRES 12 B 202 HIS LYS ASN GLU LYS ARG PHE LYS CYS ASP GLN CYS ASP SEQRES 13 B 202 TYR ALA CYS ARG GLN GLU ARG HIS MET ILE MET HIS LYS SEQRES 14 B 202 ARG THR HIS THR GLY GLU LYS PRO TYR ALA CYS SER HIS SEQRES 15 B 202 CYS ASP LYS THR PHE ARG GLN LYS GLN LEU LEU ASP MET SEQRES 16 B 202 HIS PHE LYS ARG TYR HIS ASP SEQRES 1 E 28 DC DG DC DC DC DC DC DT DG DC DT DG DG SEQRES 2 E 28 DC DC DT DC DT DG DT DG DG DG DC DA DC SEQRES 3 E 28 DT DG SEQRES 1 F 28 DC DA DG DT DG DC DC DC DA DC DA DG DA SEQRES 2 F 28 DG DG DC DC DA DG DC DA DG DG DG DG DG SEQRES 3 F 28 DC DG HET ZN A 601 1 HET ZN A 602 1 HET ZN A 603 1 HET ZN A 604 1 HET ZN A 605 1 HET ZN A 606 1 HET ZN A 607 1 HET EDO D 101 4 HET EDO D 102 4 HET ZN B 601 1 HET ZN B 602 1 HET ZN B 603 1 HET ZN B 604 1 HET ZN B 605 1 HET EDO B 606 4 HET GOL B 607 6 HET EDO E 101 4 HET EDO F 101 4 HET EDO F 102 4 HETNAM ZN ZINC ION HETNAM EDO 1,2-ETHANEDIOL HETNAM GOL GLYCEROL HETSYN EDO ETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 7 ZN 12(ZN 2+) FORMUL 14 EDO 6(C2 H6 O2) FORMUL 22 GOL C3 H8 O3 FORMUL 26 HOH *77(H2 O) HELIX 1 AA1 GLU A 362 GLY A 375 1 14 HELIX 2 AA2 ASP A 390 GLY A 403 1 14 HELIX 3 AA3 GLN A 418 HIS A 430 1 13 HELIX 4 AA4 ARG A 448 HIS A 460 1 13 HELIX 5 AA5 GLU A 478 HIS A 489 1 12 HELIX 6 AA6 GLN A 506 ARG A 515 1 10 HELIX 7 AA7 GLU B 362 GLY B 375 1 14 HELIX 8 AA8 ASP B 390 GLY B 403 1 14 HELIX 9 AA9 GLN B 418 HIS B 430 1 13 HELIX 10 AB1 ARG B 448 HIS B 460 1 13 HELIX 11 AB2 GLU B 478 HIS B 489 1 12 SHEET 1 AA1 2 PHE A 351 LYS A 352 0 SHEET 2 AA1 2 ALA A 359 SER A 360 -1 O SER A 360 N PHE A 351 SHEET 1 AA2 2 PHE A 379 GLN A 380 0 SHEET 2 AA2 2 ALA A 387 SER A 388 -1 O SER A 388 N PHE A 379 SHEET 1 AA3 2 TYR A 407 GLU A 408 0 SHEET 2 AA3 2 ARG A 415 PHE A 416 -1 O PHE A 416 N TYR A 407 SHEET 1 AA4 2 PHE A 437 HIS A 438 0 SHEET 2 AA4 2 VAL A 445 ILE A 446 -1 O ILE A 446 N PHE A 437 SHEET 1 AA5 2 LYS A 467 LYS A 468 0 SHEET 2 AA5 2 VAL A 475 PHE A 476 -1 O PHE A 476 N LYS A 467 SHEET 1 AA6 2 PHE B 351 LYS B 352 0 SHEET 2 AA6 2 ALA B 359 SER B 360 -1 O SER B 360 N PHE B 351 SHEET 1 AA7 2 PHE B 379 GLN B 380 0 SHEET 2 AA7 2 ALA B 387 SER B 388 -1 O SER B 388 N PHE B 379 SHEET 1 AA8 2 TYR B 407 GLU B 408 0 SHEET 2 AA8 2 ARG B 415 PHE B 416 -1 O PHE B 416 N TYR B 407 SHEET 1 AA9 2 PHE B 437 HIS B 438 0 SHEET 2 AA9 2 VAL B 445 ILE B 446 -1 O ILE B 446 N PHE B 437 SHEET 1 AB1 2 LYS B 467 LYS B 468 0 SHEET 2 AB1 2 VAL B 475 PHE B 476 -1 O PHE B 476 N LYS B 467 LINK SG CYS A 353 ZN ZN A 601 1555 1555 2.31 LINK SG CYS A 356 ZN ZN A 601 1555 1555 2.27 LINK NE2 HIS A 369 ZN ZN A 601 1555 1555 2.03 LINK NE2 HIS A 373 ZN ZN A 601 1555 1555 2.03 LINK SG CYS A 381 ZN ZN A 602 1555 1555 2.29 LINK SG CYS A 384 ZN ZN A 602 1555 1555 2.28 LINK NE2 HIS A 397 ZN ZN A 602 1555 1555 2.02 LINK NE2 HIS A 401 ZN ZN A 602 1555 1555 2.02 LINK SG CYS A 409 ZN ZN A 603 1555 1555 2.26 LINK SG CYS A 412 ZN ZN A 603 1555 1555 2.25 LINK NE2 HIS A 425 ZN ZN A 603 1555 1555 2.02 LINK NE2 HIS A 430 ZN ZN A 603 1555 1555 2.06 LINK SG CYS A 439 ZN ZN A 604 1555 1555 2.27 LINK SG CYS A 442 ZN ZN A 604 1555 1555 2.25 LINK NE2 HIS A 455 ZN ZN A 604 1555 1555 2.04 LINK NE2 HIS A 460 ZN ZN A 604 1555 1555 2.02 LINK SG CYS A 469 ZN ZN A 605 1555 1555 2.31 LINK SG CYS A 472 ZN ZN A 605 1555 1555 2.27 LINK NE2 HIS A 485 ZN ZN A 605 1555 1555 2.03 LINK NE2 HIS A 489 ZN ZN A 605 1555 1555 2.02 LINK SG CYS A 500 ZN ZN A 606 1555 1555 2.34 LINK NE2 HIS A 513 ZN ZN A 606 1555 1555 2.03 LINK NE2 HIS A 517 ZN ZN A 606 1555 1555 2.05 LINK SG CYS B 353 ZN ZN B 601 1555 1555 2.33 LINK SG CYS B 356 ZN ZN B 601 1555 1555 2.36 LINK NE2 HIS B 369 ZN ZN B 601 1555 1555 2.04 LINK NE2 HIS B 373 ZN ZN B 601 1555 1555 2.04 LINK SG CYS B 381 ZN ZN B 602 1555 1555 2.34 LINK SG CYS B 384 ZN ZN B 602 1555 1555 2.30 LINK NE2 HIS B 397 ZN ZN B 602 1555 1555 2.04 LINK NE2 HIS B 401 ZN ZN B 602 1555 1555 2.04 LINK SG CYS B 409 ZN ZN B 603 1555 1555 2.27 LINK SG CYS B 412 ZN ZN B 603 1555 1555 2.19 LINK NE2 HIS B 425 ZN ZN B 603 1555 1555 2.08 LINK NE2 HIS B 430 ZN ZN B 603 1555 1555 2.06 LINK SG CYS B 439 ZN ZN B 604 1555 1555 2.28 LINK SG CYS B 442 ZN ZN B 604 1555 1555 2.27 LINK NE2 HIS B 455 ZN ZN B 604 1555 1555 2.05 LINK NE2 HIS B 460 ZN ZN B 604 1555 1555 2.05 LINK SG CYS B 469 ZN ZN B 605 1555 1555 2.28 LINK SG CYS B 472 ZN ZN B 605 1555 1555 2.22 LINK NE2 HIS B 485 ZN ZN B 605 1555 1555 2.04 LINK NE2 HIS B 489 ZN ZN B 605 1555 1555 2.00 SITE 1 AC1 4 CYS A 353 CYS A 356 HIS A 369 HIS A 373 SITE 1 AC2 4 CYS A 381 CYS A 384 HIS A 397 HIS A 401 SITE 1 AC3 4 CYS A 409 CYS A 412 HIS A 425 HIS A 430 SITE 1 AC4 4 CYS A 439 CYS A 442 HIS A 455 HIS A 460 SITE 1 AC5 4 CYS A 469 CYS A 472 HIS A 485 HIS A 489 SITE 1 AC6 3 CYS A 500 HIS A 513 HIS A 517 SITE 1 AC7 2 DT C 11 DG D 19 SITE 1 AC8 2 DG C 13 DG D 15 SITE 1 AC9 4 CYS B 353 CYS B 356 HIS B 369 HIS B 373 SITE 1 AD1 4 CYS B 381 CYS B 384 HIS B 397 HIS B 401 SITE 1 AD2 4 CYS B 409 CYS B 412 HIS B 425 HIS B 430 SITE 1 AD3 4 CYS B 439 CYS B 442 HIS B 455 HIS B 460 SITE 1 AD4 4 CYS B 469 CYS B 472 HIS B 485 HIS B 489 SITE 1 AD5 3 CYS B 412 HIS B 425 LYS B 429 SITE 1 AD6 3 HIS B 441 HIS B 460 GLU B 478 SITE 1 AD7 2 DT E 11 DG F 19 SITE 1 AD8 1 DG F 15 SITE 1 AD9 1 DG F 14 CRYST1 75.072 73.825 93.289 90.00 91.38 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013321 0.000000 0.000322 0.00000 SCALE2 0.000000 0.013546 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010723 0.00000