PDB Short entry for 5UU9 HEADER HYDROLASE 16-FEB-17 5UU9 TITLE TETRAGONAL THERMOLYSIN CRYOCOOLED TO 100 K WITH 40% XYLOSE AS TITLE 2 CRYOPROTECTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: THERMOLYSIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: THERMOSTABLE NEUTRAL PROTEINASE; COMPND 5 EC: 3.4.24.27; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS THERMOPROTEOLYTICUS; SOURCE 3 ORGANISM_TAXID: 1427; SOURCE 4 GENE: NPR; SOURCE 5 EXPRESSION_SYSTEM: BACILLUS THERMOPROTEOLYTICUS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 1427 KEYWDS ZINC PROTEASE, ALPHA/BETA, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR D.H.JUERS REVDAT 4 06-MAR-24 5UU9 1 HETSYN REVDAT 3 29-JUL-20 5UU9 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 19-SEP-18 5UU9 1 JRNL REVDAT 1 08-MAR-17 5UU9 0 JRNL AUTH D.H.JUERS,C.A.FARLEY,C.P.SAXBY,R.A.COTTER,J.K.B.CAHN, JRNL AUTH 2 R.C.HOLTON-BURKE,K.HARRISON,Z.WU JRNL TITL THE IMPACT OF CRYOSOLUTION THERMAL CONTRACTION ON PROTEINS JRNL TITL 2 AND PROTEIN CRYSTALS: VOLUMES, CONFORMATION AND ORDER. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 74 922 2018 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 30198901 JRNL DOI 10.1107/S2059798318008793 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.99 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.336 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 125080 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.178 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.014 REMARK 3 FREE R VALUE TEST SET COUNT : 3770 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 20.9894 - 4.7808 0.98 4512 144 0.1649 0.1878 REMARK 3 2 4.7808 - 3.8020 0.99 4569 142 0.1173 0.1354 REMARK 3 3 3.8020 - 3.3236 0.99 4568 141 0.1311 0.1362 REMARK 3 4 3.3236 - 3.0207 0.99 4548 137 0.1391 0.1911 REMARK 3 5 3.0207 - 2.8047 0.97 4472 138 0.1286 0.1480 REMARK 3 6 2.8047 - 2.6397 0.96 4435 138 0.1190 0.1181 REMARK 3 7 2.6397 - 2.5077 0.97 4467 141 0.1223 0.1518 REMARK 3 8 2.5077 - 2.3987 0.98 4486 139 0.1261 0.1433 REMARK 3 9 2.3987 - 2.3065 0.98 4522 138 0.1250 0.1382 REMARK 3 10 2.3065 - 2.2270 0.99 4533 140 0.1317 0.1386 REMARK 3 11 2.2270 - 2.1574 0.99 4585 141 0.1455 0.1750 REMARK 3 12 2.1574 - 2.0958 0.99 4541 138 0.1585 0.2007 REMARK 3 13 2.0958 - 2.0407 0.99 4557 147 0.1646 0.2092 REMARK 3 14 2.0407 - 1.9909 0.99 4573 148 0.1694 0.1727 REMARK 3 15 1.9909 - 1.9457 0.99 4539 139 0.1831 0.1879 REMARK 3 16 1.9457 - 1.9043 0.99 4506 140 0.1775 0.2286 REMARK 3 17 1.9043 - 1.8663 0.99 4568 146 0.1945 0.1971 REMARK 3 18 1.8663 - 1.8311 0.99 4560 141 0.2066 0.2067 REMARK 3 19 1.8311 - 1.7984 0.99 4542 140 0.2132 0.2486 REMARK 3 20 1.7984 - 1.7679 0.99 4577 142 0.2309 0.2210 REMARK 3 21 1.7679 - 1.7394 0.98 4480 138 0.2511 0.2125 REMARK 3 22 1.7394 - 1.7127 0.98 4485 145 0.2619 0.2799 REMARK 3 23 1.7127 - 1.6875 0.97 4465 136 0.2642 0.2575 REMARK 3 24 1.6875 - 1.6637 0.95 4371 137 0.2745 0.3062 REMARK 3 25 1.6637 - 1.6412 0.94 4334 132 0.2961 0.3342 REMARK 3 26 1.6412 - 1.6199 0.94 4300 136 0.2925 0.2942 REMARK 3 27 1.6199 - 1.5997 0.91 4215 126 0.3156 0.3110 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.163 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.023 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.42 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 2736 REMARK 3 ANGLE : 0.967 3765 REMARK 3 CHIRALITY : 0.055 425 REMARK 3 PLANARITY : 0.006 485 REMARK 3 DIHEDRAL : 9.932 1586 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5UU9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-FEB-17. REMARK 100 THE DEPOSITION ID IS D_1000226174. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-AUG-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : SEALED TUBE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : OXFORD DIFFRACTION ENHANCE ULTRA REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : OXFORD ONYX CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSALISPRO REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 125129 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.599 REMARK 200 RESOLUTION RANGE LOW (A) : 20.990 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN: 50 MG/ML IN 45% DMSO, 0.5 M REMARK 280 ZNCL2 WELL:~2 M AMSO4, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.45000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 48.40950 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 48.40950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 26.72500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 48.40950 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 48.40950 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 80.17500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 48.40950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 48.40950 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 26.72500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 48.40950 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 48.40950 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 80.17500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 53.45000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -197.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG SER A 282 O LYS A 316 1.49 REMARK 500 HE ARG A 47 O HOH A 508 1.53 REMARK 500 HZ2 LYS A 45 O HOH A 516 1.60 REMARK 500 OE1 GLU A 187 OG SER A 201 1.85 REMARK 500 O HOH A 825 O HOH A 833 1.90 REMARK 500 O HOH A 878 O HOH A 889 1.98 REMARK 500 O HOH A 808 O HOH A 847 2.00 REMARK 500 OD1 ASP A 226 O HOH A 501 2.05 REMARK 500 ND1 HIS A 231 O HOH A 501 2.07 REMARK 500 O HOH A 750 O HOH A 783 2.09 REMARK 500 O HOH A 633 O HOH A 708 2.13 REMARK 500 O HOH A 722 O HOH A 820 2.16 REMARK 500 O HOH A 858 O HOH A 868 2.17 REMARK 500 O HOH A 816 O HOH A 915 2.17 REMARK 500 O HOH A 566 O HOH A 849 2.17 REMARK 500 O HOH A 880 O HOH A 882 2.18 REMARK 500 O HOH A 743 O HOH A 889 2.19 REMARK 500 O HOH A 527 O HOH A 713 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 516 O HOH A 609 6565 1.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 26 -57.76 68.85 REMARK 500 SER A 92 -174.40 61.63 REMARK 500 SER A 107 -158.05 56.12 REMARK 500 ASN A 111 57.37 -92.19 REMARK 500 THR A 152 -96.81 -127.16 REMARK 500 ILE A 156 -170.95 -69.19 REMARK 500 TYR A 157 38.57 -90.11 REMARK 500 ASN A 159 -145.83 58.94 REMARK 500 ASN A 159 -145.02 57.55 REMARK 500 THR A 194 76.23 42.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 403 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 57 OD1 REMARK 620 2 ASP A 57 OD2 50.5 REMARK 620 3 ASP A 59 OD1 117.8 68.0 REMARK 620 4 GLN A 61 O 92.6 84.6 89.0 REMARK 620 5 HOH A 591 O 160.6 147.7 79.7 96.1 REMARK 620 6 HOH A 629 O 85.6 134.3 156.2 85.6 77.8 REMARK 620 7 HOH A 788 O 87.6 93.2 88.2 176.9 84.7 97.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 138 OD2 REMARK 620 2 GLU A 177 OE1 78.8 REMARK 620 3 GLU A 177 OE2 128.3 50.3 REMARK 620 4 ASP A 185 OD1 158.3 122.1 71.8 REMARK 620 5 GLU A 187 O 85.4 148.3 142.6 78.7 REMARK 620 6 GLU A 190 OE1 83.4 126.5 117.1 79.0 77.9 REMARK 620 7 GLU A 190 OE2 100.0 81.5 67.7 79.2 128.7 52.7 REMARK 620 8 HOH A 642 O 101.9 80.6 80.7 88.5 76.0 152.8 148.2 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 405 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 142 NE2 REMARK 620 2 HIS A 146 NE2 105.3 REMARK 620 3 GLU A 166 OE1 101.4 104.4 REMARK 620 4 GLU A 166 OE2 121.9 100.0 20.8 REMARK 620 5 HOH A 731 O 115.4 113.7 115.2 99.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 407 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 143 OE2 REMARK 620 2 HOH A 598 O 115.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 177 OE2 REMARK 620 2 ASN A 183 O 92.7 REMARK 620 3 ASP A 185 OD2 90.2 89.5 REMARK 620 4 GLU A 190 OE2 90.6 176.1 92.6 REMARK 620 5 HOH A 538 O 86.4 85.3 173.6 92.8 REMARK 620 6 HOH A 568 O 175.0 83.5 93.0 93.1 90.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 404 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 193 O REMARK 620 2 THR A 194 O 76.3 REMARK 620 3 THR A 194 OG1 74.4 71.7 REMARK 620 4 ILE A 197 O 156.1 81.2 106.0 REMARK 620 5 ASP A 200 OD1 121.3 133.9 73.4 80.5 REMARK 620 6 HOH A 546 O 85.8 152.0 124.1 111.6 73.9 REMARK 620 7 HOH A 779 O 88.4 82.0 151.1 80.5 135.3 76.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 406 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 231 NE2 REMARK 620 2 HOH A 821 O 117.7 REMARK 620 N 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5UN3 RELATED DB: PDB REMARK 900 RELATED ID: 5UU7 RELATED DB: PDB REMARK 900 RELATED ID: 5UU8 RELATED DB: PDB REMARK 900 RELATED ID: 5UUA RELATED DB: PDB REMARK 900 RELATED ID: 5UUB RELATED DB: PDB REMARK 900 RELATED ID: 5UUC RELATED DB: PDB REMARK 900 RELATED ID: 5UUD RELATED DB: PDB REMARK 900 RELATED ID: 5UUE RELATED DB: PDB DBREF 5UU9 A 1 316 UNP P00800 THER_BACTH 233 548 SEQRES 1 A 316 ILE THR GLY THR SER THR VAL GLY VAL GLY ARG GLY VAL SEQRES 2 A 316 LEU GLY ASP GLN LYS ASN ILE ASN THR THR TYR SER THR SEQRES 3 A 316 TYR TYR TYR LEU GLN ASP ASN THR ARG GLY ASN GLY ILE SEQRES 4 A 316 PHE THR TYR ASP ALA LYS TYR ARG THR THR LEU PRO GLY SEQRES 5 A 316 SER LEU TRP ALA ASP ALA ASP ASN GLN PHE PHE ALA SER SEQRES 6 A 316 TYR ASP ALA PRO ALA VAL ASP ALA HIS TYR TYR ALA GLY SEQRES 7 A 316 VAL THR TYR ASP TYR TYR LYS ASN VAL HIS ASN ARG LEU SEQRES 8 A 316 SER TYR ASP GLY ASN ASN ALA ALA ILE ARG SER SER VAL SEQRES 9 A 316 HIS TYR SER GLN GLY TYR ASN ASN ALA PHE TRP ASN GLY SEQRES 10 A 316 SER GLN MET VAL TYR GLY ASP GLY ASP GLY GLN THR PHE SEQRES 11 A 316 ILE PRO LEU SER GLY GLY ILE ASP VAL VAL ALA HIS GLU SEQRES 12 A 316 LEU THR HIS ALA VAL THR ASP TYR THR ALA GLY LEU ILE SEQRES 13 A 316 TYR GLN ASN GLU SER GLY ALA ILE ASN GLU ALA ILE SER SEQRES 14 A 316 ASP ILE PHE GLY THR LEU VAL GLU PHE TYR ALA ASN LYS SEQRES 15 A 316 ASN PRO ASP TRP GLU ILE GLY GLU ASP VAL TYR THR PRO SEQRES 16 A 316 GLY ILE SER GLY ASP SER LEU ARG SER MET SER ASP PRO SEQRES 17 A 316 ALA LYS TYR GLY ASP PRO ASP HIS TYR SER LYS ARG TYR SEQRES 18 A 316 THR GLY THR GLN ASP ASN GLY GLY VAL HIS ILE ASN SER SEQRES 19 A 316 GLY ILE ILE ASN LYS ALA ALA TYR LEU ILE SER GLN GLY SEQRES 20 A 316 GLY THR HIS TYR GLY VAL SER VAL VAL GLY ILE GLY ARG SEQRES 21 A 316 ASP LYS LEU GLY LYS ILE PHE TYR ARG ALA LEU THR GLN SEQRES 22 A 316 TYR LEU THR PRO THR SER ASN PHE SER GLN LEU ARG ALA SEQRES 23 A 316 ALA ALA VAL GLN SER ALA THR ASP LEU TYR GLY SER THR SEQRES 24 A 316 SER GLN GLU VAL ALA SER VAL LYS GLN ALA PHE ASP ALA SEQRES 25 A 316 VAL GLY VAL LYS HET CA A 401 1 HET ZN A 402 1 HET CA A 403 1 HET CA A 404 1 HET ZN A 405 1 HET ZN A 406 1 HET ZN A 407 1 HET XYP A 408 20 HET XYP A 409 20 HET XYP A 410 20 HET XYP A 411 20 HET XYP A 412 20 HET XYP A 413 20 HET XYP A 414 20 HET XYP A 415 20 HET DMS A 416 10 HETNAM CA CALCIUM ION HETNAM ZN ZINC ION HETNAM XYP BETA-D-XYLOPYRANOSE HETNAM DMS DIMETHYL SULFOXIDE HETSYN XYP BETA-D-XYLOSE; D-XYLOSE; XYLOSE FORMUL 2 CA 3(CA 2+) FORMUL 3 ZN 4(ZN 2+) FORMUL 9 XYP 8(C5 H10 O5) FORMUL 17 DMS C2 H6 O S FORMUL 18 HOH *416(H2 O) HELIX 1 AA1 ALA A 64 TYR A 66 5 3 HELIX 2 AA2 ASP A 67 ASN A 89 1 23 HELIX 3 AA3 PRO A 132 GLY A 135 5 4 HELIX 4 AA4 GLY A 136 TYR A 151 1 16 HELIX 5 AA5 GLN A 158 ASN A 181 1 24 HELIX 6 AA6 ASP A 207 GLY A 212 5 6 HELIX 7 AA7 HIS A 216 ARG A 220 5 5 HELIX 8 AA8 THR A 224 GLY A 247 1 24 HELIX 9 AA9 GLY A 259 TYR A 274 1 16 HELIX 10 AB1 ASN A 280 GLY A 297 1 18 HELIX 11 AB2 SER A 300 VAL A 313 1 14 SHEET 1 AA1 5 ALA A 56 ASP A 57 0 SHEET 2 AA1 5 TYR A 28 TYR A 29 -1 N TYR A 28 O ASP A 57 SHEET 3 AA1 5 GLN A 17 TYR A 24 -1 N THR A 23 O TYR A 29 SHEET 4 AA1 5 THR A 4 ARG A 11 -1 N GLY A 8 O ILE A 20 SHEET 5 AA1 5 GLN A 61 PHE A 62 1 O PHE A 62 N VAL A 9 SHEET 1 AA2 3 GLN A 31 ASP A 32 0 SHEET 2 AA2 3 ILE A 39 ASP A 43 -1 O ILE A 39 N ASP A 32 SHEET 3 AA2 3 SER A 53 LEU A 54 -1 O SER A 53 N ASP A 43 SHEET 1 AA3 5 GLN A 31 ASP A 32 0 SHEET 2 AA3 5 ILE A 39 ASP A 43 -1 O ILE A 39 N ASP A 32 SHEET 3 AA3 5 ILE A 100 TYR A 106 1 O SER A 102 N TYR A 42 SHEET 4 AA3 5 MET A 120 GLY A 123 1 O MET A 120 N ARG A 101 SHEET 5 AA3 5 ALA A 113 TRP A 115 -1 N PHE A 114 O VAL A 121 SHEET 1 AA4 2 GLU A 187 ILE A 188 0 SHEET 2 AA4 2 ARG A 203 SER A 204 -1 O ARG A 203 N ILE A 188 SHEET 1 AA5 2 GLY A 248 HIS A 250 0 SHEET 2 AA5 2 VAL A 253 VAL A 255 -1 O VAL A 255 N GLY A 248 LINK OD1 ASP A 57 CA CA A 403 1555 1555 2.24 LINK OD2 ASP A 57 CA CA A 403 1555 1555 2.77 LINK OD1 ASP A 59 CA CA A 403 1555 1555 2.30 LINK O GLN A 61 CA CA A 403 1555 1555 2.21 LINK OD2 ASP A 138 CA CA A 401 1555 1555 2.33 LINK NE2 HIS A 142 ZN ZN A 405 1555 1555 1.99 LINK OE2 GLU A 143 ZN B ZN A 407 1555 1555 1.83 LINK NE2 HIS A 146 ZN ZN A 405 1555 1555 2.04 LINK OE1BGLU A 166 ZN ZN A 405 1555 1555 1.93 LINK OE2AGLU A 166 ZN ZN A 405 1555 1555 1.95 LINK OE1 GLU A 177 CA CA A 401 1555 1555 2.42 LINK OE2 GLU A 177 CA CA A 401 1555 1555 2.78 LINK OE2 GLU A 177 ZN ZN A 402 1555 1555 2.10 LINK O ASN A 183 ZN ZN A 402 1555 1555 2.33 LINK OD1 ASP A 185 CA CA A 401 1555 1555 2.47 LINK OD2 ASP A 185 ZN ZN A 402 1555 1555 1.98 LINK O GLU A 187 CA CA A 401 1555 1555 2.28 LINK OE1 GLU A 190 CA CA A 401 1555 1555 2.44 LINK OE2 GLU A 190 CA CA A 401 1555 1555 2.48 LINK OE2 GLU A 190 ZN ZN A 402 1555 1555 2.04 LINK O TYR A 193 CA CA A 404 1555 1555 2.34 LINK O THR A 194 CA CA A 404 1555 1555 2.36 LINK OG1 THR A 194 CA CA A 404 1555 1555 2.30 LINK O ILE A 197 CA CA A 404 1555 1555 2.27 LINK OD1 ASP A 200 CA CA A 404 1555 1555 2.41 LINK NE2 HIS A 231 ZN C ZN A 406 1555 1555 1.97 LINK CA CA A 401 O HOH A 642 1555 1555 2.40 LINK ZN ZN A 402 O HOH A 538 1555 1555 2.03 LINK ZN ZN A 402 O HOH A 568 1555 4464 2.04 LINK CA CA A 403 O HOH A 591 1555 1555 2.34 LINK CA CA A 403 O HOH A 629 1555 1555 2.34 LINK CA CA A 403 O HOH A 788 1555 1555 2.21 LINK CA CA A 404 O HOH A 546 1555 1555 2.37 LINK CA CA A 404 O HOH A 779 1555 1555 2.42 LINK ZN ZN A 405 O AHOH A 731 1555 1555 1.84 LINK ZN C ZN A 406 O CHOH A 821 1555 1555 1.95 LINK ZN B ZN A 407 O BHOH A 598 1555 1555 1.92 CISPEP 1 LEU A 50 PRO A 51 0 1.83 CRYST1 96.819 96.819 106.900 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010329 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010329 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009355 0.00000