PDB Short entry for 5VBL HEADER MEMBRANE PROTEIN 29-MAR-17 5VBL TITLE STRUCTURE OF APELIN RECEPTOR IN COMPLEX WITH AGONIST PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: AGONIST PEPTIDE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: APELIN RECEPTOR,RUBREDOXIN,APELIN RECEPTOR CHIMERA; COMPND 7 CHAIN: B; COMPND 8 FRAGMENT: UNP RESIDUES 7-229, UNP RESIDUES 1-54, UNP RESIDUES 243- COMPND 9 330; COMPND 10 SYNONYM: ANGIOTENSIN RECEPTOR-LIKE 1,G-PROTEIN COUPLED RECEPTOR APJ, COMPND 11 G-PROTEIN COUPLED RECEPTOR HG11,RD; COMPND 12 ENGINEERED: YES; COMPND 13 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: HOMO SAPIENS, CLOSTRIDIUM PASTEURIANUM; SOURCE 7 ORGANISM_COMMON: HUMAN; SOURCE 8 ORGANISM_TAXID: 9606, 1501; SOURCE 9 GENE: APLNR, AGTRL1, APJ; SOURCE 10 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS HUMAN APELIN RECEPTOR COMPLEX, AGONIST PEPTIDE, AMG3054, GPCR, KEYWDS 2 RUBREDOXIN, MEMBRANE PROTEIN, LCP, SYNCHROTRON RADIATION, PEPTIDE- KEYWDS 3 GCPR RECOGNITION, CARDIOVASCULAR DRUG TARGET, SPECIFIC RECOGNITION, KEYWDS 4 BINDING SPECIFICITY, DESIGNED AGONIST PEPTIDE MIMIC, ISOPEPTIDE EXPDTA X-RAY DIFFRACTION AUTHOR Y.MA,Y.YUE,Y.MA,Q.ZHANG,Q.ZHOU,Y.SONG,Y.SHEN,X.LI,X.MA,C.LI, AUTHOR 2 M.A.HANSON,G.W.HAN,E.A.SICKMIER,G.SWAMINATH,S.ZHAO,R.C.STEVEMS, AUTHOR 3 L.A.HU,W.ZHONG,M.ZHANG,F.XU REVDAT 5 15-NOV-23 5VBL 1 LINK REVDAT 4 08-NOV-23 5VBL 1 REMARK REVDAT 3 30-JUN-21 5VBL 1 KEYWDS REVDAT 2 19-JUL-17 5VBL 1 JRNL REVDAT 1 31-MAY-17 5VBL 0 JRNL AUTH Y.MA,Y.YUE,Y.MA,Q.ZHANG,Q.ZHOU,Y.SONG,Y.SHEN,X.LI,X.MA,C.LI, JRNL AUTH 2 M.A.HANSON,G.W.HAN,E.A.SICKMIER,G.SWAMINATH,S.ZHAO, JRNL AUTH 3 R.C.STEVENS,L.A.HU,W.ZHONG,M.ZHANG,F.XU JRNL TITL STRUCTURAL BASIS FOR APELIN CONTROL OF THE HUMAN APELIN JRNL TITL 2 RECEPTOR JRNL REF STRUCTURE V. 25 858 2017 JRNL REFN ISSN 1878-4186 JRNL PMID 28528775 JRNL DOI 10.1016/J.STR.2017.04.008 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.61 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.6 REMARK 3 NUMBER OF REFLECTIONS : 13686 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.240 REMARK 3 R VALUE (WORKING SET) : 0.239 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 686 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.000 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 7 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.81 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.87 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2693 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2330 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2569 REMARK 3 BIN R VALUE (WORKING SET) : 0.2330 REMARK 3 BIN FREE R VALUE : 0.2320 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.60 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 124 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2933 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 4 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 54.49 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 63.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.32380 REMARK 3 B22 (A**2) : -10.28150 REMARK 3 B33 (A**2) : 13.60530 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -3.70330 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.490 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.721 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.308 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.799 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.317 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.882 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.865 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3034 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 4132 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 998 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 44 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 451 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3034 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 1 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 396 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3369 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 0.87 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 1.62 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 19.62 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|1 - A|17} REMARK 3 ORIGIN FOR THE GROUP (A): 191.2978 -8.7453 63.5302 REMARK 3 T TENSOR REMARK 3 T11: -0.0150 T22: 0.0522 REMARK 3 T33: -0.0119 T12: -0.0058 REMARK 3 T13: 0.0252 T23: -0.0236 REMARK 3 L TENSOR REMARK 3 L11: 0.6700 L22: 0.0000 REMARK 3 L33: 1.3396 L12: -1.2314 REMARK 3 L13: -0.0314 L23: -0.0351 REMARK 3 S TENSOR REMARK 3 S11: -0.0044 S12: -0.0106 S13: 0.0119 REMARK 3 S21: 0.0109 S22: 0.0000 S23: -0.0095 REMARK 3 S31: -0.0057 S32: -0.0085 S33: 0.0044 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|19 - B|229 OR B|243 - B|330} REMARK 3 ORIGIN FOR THE GROUP (A): 189.2486 -8.0173 37.7080 REMARK 3 T TENSOR REMARK 3 T11: -0.1735 T22: 0.0504 REMARK 3 T33: -0.1991 T12: 0.0566 REMARK 3 T13: 0.0050 T23: 0.0019 REMARK 3 L TENSOR REMARK 3 L11: 1.3232 L22: 1.1496 REMARK 3 L33: 2.9783 L12: 0.4230 REMARK 3 L13: -0.1786 L23: 0.3798 REMARK 3 S TENSOR REMARK 3 S11: 0.0005 S12: -0.0688 S13: 0.0167 REMARK 3 S21: 0.0387 S22: -0.0246 S23: -0.0814 REMARK 3 S31: -0.0221 S32: 0.0024 S33: 0.0240 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { B|1001 - B|1054 } REMARK 3 ORIGIN FOR THE GROUP (A): 184.8994 -31.4301 -0.6365 REMARK 3 T TENSOR REMARK 3 T11: 0.1846 T22: 0.0453 REMARK 3 T33: -0.2181 T12: -0.0482 REMARK 3 T13: 0.0264 T23: -0.0658 REMARK 3 L TENSOR REMARK 3 L11: 0.2140 L22: 1.5421 REMARK 3 L33: 2.0697 L12: 1.7297 REMARK 3 L13: -0.4979 L23: 0.5032 REMARK 3 S TENSOR REMARK 3 S11: 0.0184 S12: -0.0206 S13: -0.0075 REMARK 3 S21: 0.0212 S22: -0.0046 S23: 0.0569 REMARK 3 S31: -0.0031 S32: -0.0211 S33: -0.0138 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5VBL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-APR-17. REMARK 100 THE DEPOSITION ID IS D_1000227158. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-APR-16 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13686 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 41.610 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.7 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.48800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4EJ4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM MES PH 6.1, 26% PEG500 DME, REMARK 280 125MM MGCL2, 100MM NACL, 500UM AMG3054, LIPIDIC CUBIC PHASE, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 75.29000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 22.15000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 75.29000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 22.15000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B -17 REMARK 465 LYS B -16 REMARK 465 THR B -15 REMARK 465 ILE B -14 REMARK 465 ILE B -13 REMARK 465 ALA B -12 REMARK 465 LEU B -11 REMARK 465 SER B -10 REMARK 465 TYR B -9 REMARK 465 ILE B -8 REMARK 465 PHE B -7 REMARK 465 CYS B -6 REMARK 465 LEU B -5 REMARK 465 VAL B -4 REMARK 465 PHE B -3 REMARK 465 ALA B -2 REMARK 465 ASP B -1 REMARK 465 TYR B 0 REMARK 465 LYS B 1 REMARK 465 ASP B 2 REMARK 465 ASP B 3 REMARK 465 ASP B 4 REMARK 465 ASP B 5 REMARK 465 LYS B 6 REMARK 465 PHE B 7 REMARK 465 ASP B 8 REMARK 465 ASN B 9 REMARK 465 TYR B 10 REMARK 465 TYR B 11 REMARK 465 GLY B 12 REMARK 465 ALA B 13 REMARK 465 ASP B 14 REMARK 465 ASN B 15 REMARK 465 GLN B 16 REMARK 465 SER B 17 REMARK 465 GLU B 18 REMARK 465 LEU B 331 REMARK 465 GLU B 332 REMARK 465 VAL B 333 REMARK 465 LEU B 334 REMARK 465 PHE B 335 REMARK 465 GLN B 336 REMARK 465 GLY B 337 REMARK 465 PRO B 338 REMARK 465 HIS B 339 REMARK 465 HIS B 340 REMARK 465 HIS B 341 REMARK 465 HIS B 342 REMARK 465 HIS B 343 REMARK 465 HIS B 344 REMARK 465 HIS B 345 REMARK 465 HIS B 346 REMARK 465 HIS B 347 REMARK 465 HIS B 348 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 1 CG CD CE NZ REMARK 470 PHE A 2 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG A 3 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 4 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 12 CG CD CE NZ REMARK 470 GLU B 59 CG CD OE1 OE2 REMARK 470 LYS B 60 CG CD CE NZ REMARK 470 ASN B 175 CG OD1 ND2 REMARK 470 SER B 329 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CG GLU A 10 NZ LYS A 13 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 16 CA - C - N ANGL. DEV. = 16.1 DEGREES REMARK 500 PRO A 16 O - C - N ANGL. DEV. = -19.4 DEGREES REMARK 500 200 A 17 C - N - CA ANGL. DEV. = 27.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 16 22.86 -71.84 REMARK 500 SER B 57 -142.52 -93.35 REMARK 500 ARG B 58 -145.12 57.02 REMARK 500 TYR B 93 67.79 62.70 REMARK 500 ARG B 133 74.82 57.62 REMARK 500 ARG B 141 68.71 39.14 REMARK 500 GLU B 174 -156.33 65.93 REMARK 500 THR B 190 -140.42 -83.78 REMARK 500 SER B 193 32.41 -71.86 REMARK 500 PHE B 210 -51.84 -146.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 PRO A 16 -16.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 OLC B 1102 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B1006 SG REMARK 620 2 CYS B1009 SG 103.3 REMARK 620 3 CYS B1039 SG 113.8 104.3 REMARK 620 4 CYS B1042 SG 108.6 111.1 115.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 1101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC B 1102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues HRG A 8 and ALC A 9 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues OIC A 14 and NLE A 15 DBREF 5VBL A 1 16 PDB 5VBL 5VBL 1 16 DBREF 5VBL B 7 229 UNP P35414 APJ_HUMAN 7 229 DBREF 5VBL B 1001 1054 UNP P00268 RUBR_CLOPA 1 54 DBREF 5VBL B 243 330 UNP P35414 APJ_HUMAN 243 330 SEQADV 5VBL MET B -17 UNP P35414 INITIATING METHIONINE SEQADV 5VBL LYS B -16 UNP P35414 EXPRESSION TAG SEQADV 5VBL THR B -15 UNP P35414 EXPRESSION TAG SEQADV 5VBL ILE B -14 UNP P35414 EXPRESSION TAG SEQADV 5VBL ILE B -13 UNP P35414 EXPRESSION TAG SEQADV 5VBL ALA B -12 UNP P35414 EXPRESSION TAG SEQADV 5VBL LEU B -11 UNP P35414 EXPRESSION TAG SEQADV 5VBL SER B -10 UNP P35414 EXPRESSION TAG SEQADV 5VBL TYR B -9 UNP P35414 EXPRESSION TAG SEQADV 5VBL ILE B -8 UNP P35414 EXPRESSION TAG SEQADV 5VBL PHE B -7 UNP P35414 EXPRESSION TAG SEQADV 5VBL CYS B -6 UNP P35414 EXPRESSION TAG SEQADV 5VBL LEU B -5 UNP P35414 EXPRESSION TAG SEQADV 5VBL VAL B -4 UNP P35414 EXPRESSION TAG SEQADV 5VBL PHE B -3 UNP P35414 EXPRESSION TAG SEQADV 5VBL ALA B -2 UNP P35414 EXPRESSION TAG SEQADV 5VBL ASP B -1 UNP P35414 EXPRESSION TAG SEQADV 5VBL TYR B 0 UNP P35414 EXPRESSION TAG SEQADV 5VBL LYS B 1 UNP P35414 EXPRESSION TAG SEQADV 5VBL ASP B 2 UNP P35414 EXPRESSION TAG SEQADV 5VBL ASP B 3 UNP P35414 EXPRESSION TAG SEQADV 5VBL ASP B 4 UNP P35414 EXPRESSION TAG SEQADV 5VBL ASP B 5 UNP P35414 EXPRESSION TAG SEQADV 5VBL LYS B 6 UNP P35414 EXPRESSION TAG SEQADV 5VBL ALA B 117 UNP P35414 VAL 117 ENGINEERED MUTATION SEQADV 5VBL ASN B 177 UNP P35414 THR 177 ENGINEERED MUTATION SEQADV 5VBL LYS B 261 UNP P35414 TRP 261 ENGINEERED MUTATION SEQADV 5VBL LEU B 325 UNP P35414 CYS 325 ENGINEERED MUTATION SEQADV 5VBL MET B 326 UNP P35414 CYS 326 ENGINEERED MUTATION SEQADV 5VBL LEU B 331 UNP P35414 EXPRESSION TAG SEQADV 5VBL GLU B 332 UNP P35414 EXPRESSION TAG SEQADV 5VBL VAL B 333 UNP P35414 EXPRESSION TAG SEQADV 5VBL LEU B 334 UNP P35414 EXPRESSION TAG SEQADV 5VBL PHE B 335 UNP P35414 EXPRESSION TAG SEQADV 5VBL GLN B 336 UNP P35414 EXPRESSION TAG SEQADV 5VBL GLY B 337 UNP P35414 EXPRESSION TAG SEQADV 5VBL PRO B 338 UNP P35414 EXPRESSION TAG SEQADV 5VBL HIS B 339 UNP P35414 EXPRESSION TAG SEQADV 5VBL HIS B 340 UNP P35414 EXPRESSION TAG SEQADV 5VBL HIS B 341 UNP P35414 EXPRESSION TAG SEQADV 5VBL HIS B 342 UNP P35414 EXPRESSION TAG SEQADV 5VBL HIS B 343 UNP P35414 EXPRESSION TAG SEQADV 5VBL HIS B 344 UNP P35414 EXPRESSION TAG SEQADV 5VBL HIS B 345 UNP P35414 EXPRESSION TAG SEQADV 5VBL HIS B 346 UNP P35414 EXPRESSION TAG SEQADV 5VBL HIS B 347 UNP P35414 EXPRESSION TAG SEQADV 5VBL HIS B 348 UNP P35414 EXPRESSION TAG SEQRES 1 A 17 LYS PHE ARG ARG GLN ARG PRO HRG ALC GLU HIS LYS LYS SEQRES 2 A 17 OIC NLE PRO 200 SEQRES 1 B 407 MET LYS THR ILE ILE ALA LEU SER TYR ILE PHE CYS LEU SEQRES 2 B 407 VAL PHE ALA ASP TYR LYS ASP ASP ASP ASP LYS PHE ASP SEQRES 3 B 407 ASN TYR TYR GLY ALA ASP ASN GLN SER GLU CYS GLU TYR SEQRES 4 B 407 THR ASP TRP LYS SER SER GLY ALA LEU ILE PRO ALA ILE SEQRES 5 B 407 TYR MET LEU VAL PHE LEU LEU GLY THR THR GLY ASN GLY SEQRES 6 B 407 LEU VAL LEU TRP THR VAL PHE ARG SER SER ARG GLU LYS SEQRES 7 B 407 ARG ARG SER ALA ASP ILE PHE ILE ALA SER LEU ALA VAL SEQRES 8 B 407 ALA ASP LEU THR PHE VAL VAL THR LEU PRO LEU TRP ALA SEQRES 9 B 407 THR TYR THR TYR ARG ASP TYR ASP TRP PRO PHE GLY THR SEQRES 10 B 407 PHE PHE CYS LYS LEU SER SER TYR LEU ILE PHE VAL ASN SEQRES 11 B 407 MET TYR ALA SER ALA PHE CYS LEU THR GLY LEU SER PHE SEQRES 12 B 407 ASP ARG TYR LEU ALA ILE VAL ARG PRO VAL ALA ASN ALA SEQRES 13 B 407 ARG LEU ARG LEU ARG VAL SER GLY ALA VAL ALA THR ALA SEQRES 14 B 407 VAL LEU TRP VAL LEU ALA ALA LEU LEU ALA MET PRO VAL SEQRES 15 B 407 MET VAL LEU ARG THR THR GLY ASP LEU GLU ASN THR ASN SEQRES 16 B 407 LYS VAL GLN CYS TYR MET ASP TYR SER MET VAL ALA THR SEQRES 17 B 407 VAL SER SER GLU TRP ALA TRP GLU VAL GLY LEU GLY VAL SEQRES 18 B 407 SER SER THR THR VAL GLY PHE VAL VAL PRO PHE THR ILE SEQRES 19 B 407 MET LEU THR CYS TYR PHE PHE ILE ALA GLN THR ILE ALA SEQRES 20 B 407 MET LYS LYS TYR THR CYS THR VAL CYS GLY TYR ILE TYR SEQRES 21 B 407 ASN PRO GLU ASP GLY ASP PRO ASP ASN GLY VAL ASN PRO SEQRES 22 B 407 GLY THR ASP PHE LYS ASP ILE PRO ASP ASP TRP VAL CYS SEQRES 23 B 407 PRO LEU CYS GLY VAL GLY LYS ASP GLN PHE GLU GLU VAL SEQRES 24 B 407 GLU GLU ARG ARG ARG LEU LEU SER ILE ILE VAL VAL LEU SEQRES 25 B 407 VAL VAL THR PHE ALA LEU CYS LYS MET PRO TYR HIS LEU SEQRES 26 B 407 VAL LYS THR LEU TYR MET LEU GLY SER LEU LEU HIS TRP SEQRES 27 B 407 PRO CYS ASP PHE ASP LEU PHE LEU MET ASN ILE PHE PRO SEQRES 28 B 407 TYR CYS THR CYS ILE SER TYR VAL ASN SER CYS LEU ASN SEQRES 29 B 407 PRO PHE LEU TYR ALA PHE PHE ASP PRO ARG PHE ARG GLN SEQRES 30 B 407 ALA CYS THR SER MET LEU LEU MET GLY GLN SER ARG LEU SEQRES 31 B 407 GLU VAL LEU PHE GLN GLY PRO HIS HIS HIS HIS HIS HIS SEQRES 32 B 407 HIS HIS HIS HIS HET HRG A 8 12 HET ALC A 9 11 HET OIC A 14 11 HET NLE A 15 8 HET 200 A 17 13 HET ZN B1101 1 HET OLC B1102 15 HETNAM HRG L-HOMOARGININE HETNAM ALC 2-AMINO-3-CYCLOHEXYL-PROPIONIC ACID HETNAM OIC OCTAHYDROINDOLE-2-CARBOXYLIC ACID HETNAM NLE NORLEUCINE HETNAM 200 4-CHLORO-L-PHENYLALANINE HETNAM ZN ZINC ION HETNAM OLC (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE HETSYN OLC 1-OLEOYL-R-GLYCEROL FORMUL 1 HRG C7 H16 N4 O2 FORMUL 1 ALC C9 H17 N O2 FORMUL 1 OIC C9 H15 N O2 FORMUL 1 NLE C6 H13 N O2 FORMUL 1 200 C9 H10 CL N O2 FORMUL 3 ZN ZN 2+ FORMUL 4 OLC C21 H40 O4 FORMUL 5 HOH *4(H2 O) HELIX 1 AA1 ALA B 29 SER B 56 1 28 HELIX 2 AA2 SER B 57 ARG B 61 5 5 HELIX 3 AA3 ALA B 64 VAL B 80 1 17 HELIX 4 AA4 THR B 81 ARG B 91 1 11 HELIX 5 AA5 PHE B 97 VAL B 132 1 36 HELIX 6 AA6 ALA B 136 ARG B 141 1 6 HELIX 7 AA7 ARG B 141 ALA B 161 1 21 HELIX 8 AA8 ALA B 161 LEU B 167 1 7 HELIX 9 AA9 SER B 193 PHE B 210 1 18 HELIX 10 AB1 PHE B 210 ALA B 229 1 20 HELIX 11 AB2 ASP B 1019 GLY B 1023 5 5 HELIX 12 AB3 ASP B 1029 ILE B 1033 5 5 HELIX 13 AB4 GLY B 1045 ASP B 1047 5 3 HELIX 14 AB5 ARG B 244 LEU B 276 1 33 HELIX 15 AB6 PRO B 280 ASP B 313 1 34 HELIX 16 AB7 ASP B 313 MET B 326 1 14 SHEET 1 AA1 2 ARG B 168 GLY B 171 0 SHEET 2 AA1 2 GLN B 180 MET B 183 -1 O GLN B 180 N GLY B 171 SHEET 1 AA2 3 ILE B1012 TYR B1013 0 SHEET 2 AA2 3 TYR B1004 CYS B1006 -1 N TYR B1004 O TYR B1013 SHEET 3 AA2 3 PHE B1049 GLU B1051 -1 O GLU B1050 N THR B1005 SSBOND 1 CYS B 19 CYS B 281 1555 1555 2.03 SSBOND 2 CYS B 102 CYS B 181 1555 1555 2.03 LINK C PRO A 7 N HRG A 8 1555 1555 1.35 LINK C HRG A 8 N ALC A 9 1555 1555 1.35 LINK C ALC A 9 N GLU A 10 1555 1555 1.35 LINK CD GLU A 10 NZ LYS A 13 1555 1555 1.34 LINK C LYS A 13 N OIC A 14 1555 1555 1.36 LINK C OIC A 14 N NLE A 15 1555 1555 1.35 LINK C NLE A 15 N PRO A 16 1555 1555 1.36 LINK C PRO A 16 N 200 A 17 1555 1555 1.36 LINK SG CYS B1006 ZN ZN B1101 1555 1555 2.37 LINK SG CYS B1009 ZN ZN B1101 1555 1555 2.38 LINK SG CYS B1039 ZN ZN B1101 1555 1555 2.26 LINK SG CYS B1042 ZN ZN B1101 1555 1555 2.18 SITE 1 AC1 4 CYS B1006 CYS B1009 CYS B1039 CYS B1042 SITE 1 AC2 8 PHE B 110 TYR B 114 LEU B 160 PRO B 163 SITE 2 AC2 8 VAL B 164 LEU B 201 GLY B 202 LYS B 268 SITE 1 AC3 8 ARG A 6 PRO A 7 GLU A 10 GLU B 20 SITE 2 AC3 8 TYR B 21 THR B 22 ASP B 23 ASN B 175 SITE 1 AC4 7 LYS A 13 PRO A 16 200 A 17 MET B 183 SITE 2 AC4 7 GLU B 198 TYR B 271 PHE B 291 CRYST1 150.580 44.300 79.450 90.00 114.87 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006641 0.000000 0.003078 0.00000 SCALE2 0.000000 0.022573 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013873 0.00000