PDB Short entry for 5VWM HEADER HYDROLASE/HYDROLASE INHIBITOR 22-MAY-17 5VWM TITLE CRYSTAL STRUCTURE OF UDP-3-O-[3-HYDROXYMYRISTOYL] N-ACETYLGLUCOSAMINE TITLE 2 DEACETYLASE (LPXC) FROM PSEUDOMONAS AERUGINOSA IN COMPLEX WITH CHIR- TITLE 3 090 INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: UDP-3-O-ACYL-N-ACETYLGLUCOSAMINE DEACETYLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: UDP-3-O-ACYL-GLCNAC DEACETYLASE,UDP-3-O-[R-3- COMPND 5 HYDROXYMYRISTOYL]-N-ACETYLGLUCOSAMINE DEACETYLASE; COMPND 6 EC: 3.5.1.108; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA (STRAIN ATCC 15692 / DSM SOURCE 3 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1); SOURCE 4 ORGANISM_TAXID: 208964; SOURCE 5 STRAIN: ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 SOURCE 6 / 1C / PRS 101 / PAO1; SOURCE 7 GENE: LPXC, ENVA, PA4406; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PSAEA.00166.A.DG15 KEYWDS INHIBITOR, SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, KEYWDS 2 SSGCID, LPXC, HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 5 04-OCT-23 5VWM 1 REMARK REVDAT 4 06-FEB-19 5VWM 1 REMARK REVDAT 3 07-MAR-18 5VWM 1 REMARK REVDAT 2 27-SEP-17 5VWM 1 REMARK REVDAT 1 07-JUN-17 5VWM 0 JRNL AUTH S.L.DELKER,S.J.MAYCLIN,J.N.PHAN,J.ABENDROTH,D.LORIMER, JRNL AUTH 2 T.E.EDWARDS JRNL TITL CRYSTAL STRUCTURE OF UDP-3-O-[3-HYDROXYMYRISTOYL] JRNL TITL 2 N-ACETYLGLUCOSAMINE DEACETYLASE (LPXC) FROM PSEUDOMONAS JRNL TITL 3 AERUGINOSA IN COMPLEX WITH CHIR-090 INHIBITOR JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_2733 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.30 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.3 REMARK 3 NUMBER OF REFLECTIONS : 23488 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.142 REMARK 3 R VALUE (WORKING SET) : 0.138 REMARK 3 FREE R VALUE : 0.179 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.660 REMARK 3 FREE R VALUE TEST SET COUNT : 2033 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.3082 - 4.4377 0.99 1506 143 0.1426 0.1670 REMARK 3 2 4.4377 - 3.5229 0.99 1500 164 0.1164 0.1356 REMARK 3 3 3.5229 - 3.0777 0.99 1472 160 0.1293 0.1652 REMARK 3 4 3.0777 - 2.7964 0.99 1483 147 0.1391 0.1805 REMARK 3 5 2.7964 - 2.5960 0.98 1512 126 0.1374 0.1626 REMARK 3 6 2.5960 - 2.4429 0.98 1499 126 0.1380 0.2017 REMARK 3 7 2.4429 - 2.3206 0.97 1475 136 0.1437 0.1911 REMARK 3 8 2.3206 - 2.2196 0.97 1477 122 0.1394 0.1962 REMARK 3 9 2.2196 - 2.1341 0.97 1505 121 0.1406 0.2007 REMARK 3 10 2.1341 - 2.0605 0.94 1396 162 0.1347 0.1868 REMARK 3 11 2.0605 - 1.9961 0.94 1402 142 0.1363 0.2053 REMARK 3 12 1.9961 - 1.9390 0.89 1357 132 0.1449 0.1816 REMARK 3 13 1.9390 - 1.8880 0.88 1319 132 0.1500 0.1944 REMARK 3 14 1.8880 - 1.8419 0.84 1308 99 0.1685 0.2640 REMARK 3 15 1.8419 - 1.8000 0.83 1244 121 0.1870 0.2558 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.980 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 10.48 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2528 REMARK 3 ANGLE : 0.848 3436 REMARK 3 CHIRALITY : 0.056 393 REMARK 3 PLANARITY : 0.005 447 REMARK 3 DIHEDRAL : 18.963 1560 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 117 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.3192 5.5336 -5.6091 REMARK 3 T TENSOR REMARK 3 T11: 0.0351 T22: 0.0520 REMARK 3 T33: 0.0388 T12: 0.0054 REMARK 3 T13: 0.0028 T23: 0.0125 REMARK 3 L TENSOR REMARK 3 L11: 0.6050 L22: 1.2135 REMARK 3 L33: 0.9215 L12: -0.1014 REMARK 3 L13: -0.0480 L23: 0.1125 REMARK 3 S TENSOR REMARK 3 S11: 0.0204 S12: 0.0351 S13: 0.0305 REMARK 3 S21: -0.0653 S22: -0.0424 S23: -0.0399 REMARK 3 S31: -0.0387 S32: 0.0149 S33: 0.0172 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 118 THROUGH 147 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.8119 -10.4722 0.7635 REMARK 3 T TENSOR REMARK 3 T11: 0.0297 T22: 0.0386 REMARK 3 T33: 0.0440 T12: -0.0209 REMARK 3 T13: 0.0239 T23: 0.0055 REMARK 3 L TENSOR REMARK 3 L11: 1.9185 L22: 0.8908 REMARK 3 L33: 2.7638 L12: -0.3333 REMARK 3 L13: 1.5074 L23: 0.2042 REMARK 3 S TENSOR REMARK 3 S11: 0.1713 S12: 0.0503 S13: -0.0649 REMARK 3 S21: 0.0108 S22: 0.0008 S23: -0.0620 REMARK 3 S31: 0.1938 S32: 0.1584 S33: -0.1582 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 148 THROUGH 170 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.6274 -6.4396 18.1215 REMARK 3 T TENSOR REMARK 3 T11: 0.0618 T22: 0.0828 REMARK 3 T33: 0.0581 T12: -0.0116 REMARK 3 T13: 0.0017 T23: -0.0067 REMARK 3 L TENSOR REMARK 3 L11: 1.0872 L22: 2.8729 REMARK 3 L33: 4.2518 L12: -1.7453 REMARK 3 L13: -1.8970 L23: 3.2123 REMARK 3 S TENSOR REMARK 3 S11: -0.1111 S12: -0.1433 S13: -0.0147 REMARK 3 S21: 0.2243 S22: 0.1010 S23: 0.0330 REMARK 3 S31: 0.2631 S32: 0.0407 S33: 0.0216 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 171 THROUGH 249 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.8747 2.7620 13.1165 REMARK 3 T TENSOR REMARK 3 T11: 0.0322 T22: 0.0628 REMARK 3 T33: 0.0367 T12: -0.0028 REMARK 3 T13: -0.0109 T23: 0.0109 REMARK 3 L TENSOR REMARK 3 L11: 1.0664 L22: 1.1788 REMARK 3 L33: 1.5892 L12: -0.0132 REMARK 3 L13: -0.2973 L23: 0.1199 REMARK 3 S TENSOR REMARK 3 S11: -0.0022 S12: -0.0144 S13: -0.0233 REMARK 3 S21: 0.1268 S22: -0.0532 S23: 0.0807 REMARK 3 S31: 0.0057 S32: -0.0705 S33: 0.0495 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 250 THROUGH 284 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.1560 -7.3678 3.1437 REMARK 3 T TENSOR REMARK 3 T11: 0.0174 T22: 0.0378 REMARK 3 T33: 0.0425 T12: 0.0018 REMARK 3 T13: -0.0124 T23: 0.0181 REMARK 3 L TENSOR REMARK 3 L11: 1.8461 L22: 2.0636 REMARK 3 L33: 1.6921 L12: 0.1203 REMARK 3 L13: -0.0458 L23: 0.6014 REMARK 3 S TENSOR REMARK 3 S11: 0.0446 S12: 0.0083 S13: 0.0326 REMARK 3 S21: 0.0242 S22: -0.0252 S23: -0.1128 REMARK 3 S31: -0.0022 S32: 0.0300 S33: -0.0113 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 285 THROUGH 299 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.3575 -18.4445 -7.8470 REMARK 3 T TENSOR REMARK 3 T11: 0.0813 T22: 0.0697 REMARK 3 T33: 0.0835 T12: -0.0143 REMARK 3 T13: -0.0008 T23: -0.0079 REMARK 3 L TENSOR REMARK 3 L11: 7.1049 L22: 0.1940 REMARK 3 L33: 1.2848 L12: -0.9910 REMARK 3 L13: -1.1734 L23: -0.0070 REMARK 3 S TENSOR REMARK 3 S11: 0.0946 S12: -0.1996 S13: 0.1339 REMARK 3 S21: 0.0271 S22: 0.0624 S23: -0.0038 REMARK 3 S31: 0.1046 S32: -0.0908 S33: -0.1253 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5VWM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1000228082. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAY-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X8C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23497 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 42.297 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.9 REMARK 200 DATA REDUNDANCY : 4.035 REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.5600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.73 REMARK 200 R MERGE FOR SHELL (I) : 0.18200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.020 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 3UHM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRAY289953 G9:HEPES, 100 MM HCL, PH REMARK 280 7.7, 50 MM CACL, 4% (W/V) PROPANOL, 25% (W/V) PEG 3350 +1MM REMARK 280 ZNCL2, 1MM CHIR-090 : CRYO = 20%EG : PSAEA.00166.A.DG15.PD00471 REMARK 280 AT 5 MG/ML, PUCK SHD-3, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -96 REMARK 465 SER A -95 REMARK 465 HIS A -94 REMARK 465 HIS A -93 REMARK 465 HIS A -92 REMARK 465 HIS A -91 REMARK 465 HIS A -90 REMARK 465 HIS A -89 REMARK 465 SER A -88 REMARK 465 GLY A -87 REMARK 465 GLU A -86 REMARK 465 VAL A -85 REMARK 465 LYS A -84 REMARK 465 PRO A -83 REMARK 465 GLU A -82 REMARK 465 VAL A -81 REMARK 465 LYS A -80 REMARK 465 PRO A -79 REMARK 465 GLU A -78 REMARK 465 THR A -77 REMARK 465 HIS A -76 REMARK 465 ILE A -75 REMARK 465 ASN A -74 REMARK 465 LEU A -73 REMARK 465 LYS A -72 REMARK 465 VAL A -71 REMARK 465 SER A -70 REMARK 465 ASP A -69 REMARK 465 GLY A -68 REMARK 465 SER A -67 REMARK 465 SER A -66 REMARK 465 GLU A -65 REMARK 465 ILE A -64 REMARK 465 PHE A -63 REMARK 465 PHE A -62 REMARK 465 LYS A -61 REMARK 465 ILE A -60 REMARK 465 LYS A -59 REMARK 465 LYS A -58 REMARK 465 THR A -57 REMARK 465 THR A -56 REMARK 465 PRO A -55 REMARK 465 LEU A -54 REMARK 465 ARG A -53 REMARK 465 ARG A -52 REMARK 465 LEU A -51 REMARK 465 MET A -50 REMARK 465 GLU A -49 REMARK 465 ALA A -48 REMARK 465 PHE A -47 REMARK 465 ALA A -46 REMARK 465 LYS A -45 REMARK 465 ARG A -44 REMARK 465 GLN A -43 REMARK 465 GLY A -42 REMARK 465 LYS A -41 REMARK 465 GLU A -40 REMARK 465 MET A -39 REMARK 465 ASP A -38 REMARK 465 SER A -37 REMARK 465 LEU A -36 REMARK 465 ARG A -35 REMARK 465 PHE A -34 REMARK 465 LEU A -33 REMARK 465 TYR A -32 REMARK 465 ASP A -31 REMARK 465 GLY A -30 REMARK 465 ILE A -29 REMARK 465 ARG A -28 REMARK 465 ILE A -27 REMARK 465 GLN A -26 REMARK 465 ALA A -25 REMARK 465 ASP A -24 REMARK 465 GLN A -23 REMARK 465 THR A -22 REMARK 465 PRO A -21 REMARK 465 GLU A -20 REMARK 465 ASP A -19 REMARK 465 LEU A -18 REMARK 465 ASP A -17 REMARK 465 MET A -16 REMARK 465 GLU A -15 REMARK 465 ASP A -14 REMARK 465 ASN A -13 REMARK 465 ASP A -12 REMARK 465 ILE A -11 REMARK 465 ILE A -10 REMARK 465 GLU A -9 REMARK 465 ALA A -8 REMARK 465 HIS A -7 REMARK 465 ARG A -6 REMARK 465 GLU A -5 REMARK 465 GLN A -4 REMARK 465 ILE A -3 REMARK 465 GLY A -2 REMARK 465 GLY A -1 REMARK 465 ALA A 300 REMARK 465 ALA A 301 REMARK 465 ALA A 302 REMARK 465 VAL A 303 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 287 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN A 220 O HOH A 501 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 62 -54.33 70.59 REMARK 500 THR A 75 60.85 61.06 REMARK 500 MET A 103 -122.54 59.03 REMARK 500 ASP A 159 80.00 -153.57 REMARK 500 ASP A 232 40.90 -108.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 404 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 59 OE2 REMARK 620 2 THR A 61 O 148.8 REMARK 620 3 THR A 61 OG1 85.0 70.5 REMARK 620 4 EDO A 406 O1 75.7 135.2 144.6 REMARK 620 5 EDO A 406 O2 137.9 68.6 137.1 68.2 REMARK 620 6 HOH A 591 O 91.3 76.5 103.6 106.1 79.0 REMARK 620 7 HOH A 662 O 96.1 93.6 70.4 82.4 99.7 169.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 78 NE2 REMARK 620 2 HIS A 237 NE2 96.2 REMARK 620 3 ASP A 241 OD1 96.7 99.3 REMARK 620 4 C90 A 401 O22 121.0 89.6 140.2 REMARK 620 5 C90 A 401 O24 94.6 166.1 88.0 77.4 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue C90 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 407 DBREF 5VWM A 1 303 UNP P47205 LPXC_PSEAE 1 303 SEQADV 5VWM MET A -96 UNP P47205 INITIATING METHIONINE SEQADV 5VWM SER A -95 UNP P47205 EXPRESSION TAG SEQADV 5VWM HIS A -94 UNP P47205 EXPRESSION TAG SEQADV 5VWM HIS A -93 UNP P47205 EXPRESSION TAG SEQADV 5VWM HIS A -92 UNP P47205 EXPRESSION TAG SEQADV 5VWM HIS A -91 UNP P47205 EXPRESSION TAG SEQADV 5VWM HIS A -90 UNP P47205 EXPRESSION TAG SEQADV 5VWM HIS A -89 UNP P47205 EXPRESSION TAG SEQADV 5VWM SER A -88 UNP P47205 EXPRESSION TAG SEQADV 5VWM GLY A -87 UNP P47205 EXPRESSION TAG SEQADV 5VWM GLU A -86 UNP P47205 EXPRESSION TAG SEQADV 5VWM VAL A -85 UNP P47205 EXPRESSION TAG SEQADV 5VWM LYS A -84 UNP P47205 EXPRESSION TAG SEQADV 5VWM PRO A -83 UNP P47205 EXPRESSION TAG SEQADV 5VWM GLU A -82 UNP P47205 EXPRESSION TAG SEQADV 5VWM VAL A -81 UNP P47205 EXPRESSION TAG SEQADV 5VWM LYS A -80 UNP P47205 EXPRESSION TAG SEQADV 5VWM PRO A -79 UNP P47205 EXPRESSION TAG SEQADV 5VWM GLU A -78 UNP P47205 EXPRESSION TAG SEQADV 5VWM THR A -77 UNP P47205 EXPRESSION TAG SEQADV 5VWM HIS A -76 UNP P47205 EXPRESSION TAG SEQADV 5VWM ILE A -75 UNP P47205 EXPRESSION TAG SEQADV 5VWM ASN A -74 UNP P47205 EXPRESSION TAG SEQADV 5VWM LEU A -73 UNP P47205 EXPRESSION TAG SEQADV 5VWM LYS A -72 UNP P47205 EXPRESSION TAG SEQADV 5VWM VAL A -71 UNP P47205 EXPRESSION TAG SEQADV 5VWM SER A -70 UNP P47205 EXPRESSION TAG SEQADV 5VWM ASP A -69 UNP P47205 EXPRESSION TAG SEQADV 5VWM GLY A -68 UNP P47205 EXPRESSION TAG SEQADV 5VWM SER A -67 UNP P47205 EXPRESSION TAG SEQADV 5VWM SER A -66 UNP P47205 EXPRESSION TAG SEQADV 5VWM GLU A -65 UNP P47205 EXPRESSION TAG SEQADV 5VWM ILE A -64 UNP P47205 EXPRESSION TAG SEQADV 5VWM PHE A -63 UNP P47205 EXPRESSION TAG SEQADV 5VWM PHE A -62 UNP P47205 EXPRESSION TAG SEQADV 5VWM LYS A -61 UNP P47205 EXPRESSION TAG SEQADV 5VWM ILE A -60 UNP P47205 EXPRESSION TAG SEQADV 5VWM LYS A -59 UNP P47205 EXPRESSION TAG SEQADV 5VWM LYS A -58 UNP P47205 EXPRESSION TAG SEQADV 5VWM THR A -57 UNP P47205 EXPRESSION TAG SEQADV 5VWM THR A -56 UNP P47205 EXPRESSION TAG SEQADV 5VWM PRO A -55 UNP P47205 EXPRESSION TAG SEQADV 5VWM LEU A -54 UNP P47205 EXPRESSION TAG SEQADV 5VWM ARG A -53 UNP P47205 EXPRESSION TAG SEQADV 5VWM ARG A -52 UNP P47205 EXPRESSION TAG SEQADV 5VWM LEU A -51 UNP P47205 EXPRESSION TAG SEQADV 5VWM MET A -50 UNP P47205 EXPRESSION TAG SEQADV 5VWM GLU A -49 UNP P47205 EXPRESSION TAG SEQADV 5VWM ALA A -48 UNP P47205 EXPRESSION TAG SEQADV 5VWM PHE A -47 UNP P47205 EXPRESSION TAG SEQADV 5VWM ALA A -46 UNP P47205 EXPRESSION TAG SEQADV 5VWM LYS A -45 UNP P47205 EXPRESSION TAG SEQADV 5VWM ARG A -44 UNP P47205 EXPRESSION TAG SEQADV 5VWM GLN A -43 UNP P47205 EXPRESSION TAG SEQADV 5VWM GLY A -42 UNP P47205 EXPRESSION TAG SEQADV 5VWM LYS A -41 UNP P47205 EXPRESSION TAG SEQADV 5VWM GLU A -40 UNP P47205 EXPRESSION TAG SEQADV 5VWM MET A -39 UNP P47205 EXPRESSION TAG SEQADV 5VWM ASP A -38 UNP P47205 EXPRESSION TAG SEQADV 5VWM SER A -37 UNP P47205 EXPRESSION TAG SEQADV 5VWM LEU A -36 UNP P47205 EXPRESSION TAG SEQADV 5VWM ARG A -35 UNP P47205 EXPRESSION TAG SEQADV 5VWM PHE A -34 UNP P47205 EXPRESSION TAG SEQADV 5VWM LEU A -33 UNP P47205 EXPRESSION TAG SEQADV 5VWM TYR A -32 UNP P47205 EXPRESSION TAG SEQADV 5VWM ASP A -31 UNP P47205 EXPRESSION TAG SEQADV 5VWM GLY A -30 UNP P47205 EXPRESSION TAG SEQADV 5VWM ILE A -29 UNP P47205 EXPRESSION TAG SEQADV 5VWM ARG A -28 UNP P47205 EXPRESSION TAG SEQADV 5VWM ILE A -27 UNP P47205 EXPRESSION TAG SEQADV 5VWM GLN A -26 UNP P47205 EXPRESSION TAG SEQADV 5VWM ALA A -25 UNP P47205 EXPRESSION TAG SEQADV 5VWM ASP A -24 UNP P47205 EXPRESSION TAG SEQADV 5VWM GLN A -23 UNP P47205 EXPRESSION TAG SEQADV 5VWM THR A -22 UNP P47205 EXPRESSION TAG SEQADV 5VWM PRO A -21 UNP P47205 EXPRESSION TAG SEQADV 5VWM GLU A -20 UNP P47205 EXPRESSION TAG SEQADV 5VWM ASP A -19 UNP P47205 EXPRESSION TAG SEQADV 5VWM LEU A -18 UNP P47205 EXPRESSION TAG SEQADV 5VWM ASP A -17 UNP P47205 EXPRESSION TAG SEQADV 5VWM MET A -16 UNP P47205 EXPRESSION TAG SEQADV 5VWM GLU A -15 UNP P47205 EXPRESSION TAG SEQADV 5VWM ASP A -14 UNP P47205 EXPRESSION TAG SEQADV 5VWM ASN A -13 UNP P47205 EXPRESSION TAG SEQADV 5VWM ASP A -12 UNP P47205 EXPRESSION TAG SEQADV 5VWM ILE A -11 UNP P47205 EXPRESSION TAG SEQADV 5VWM ILE A -10 UNP P47205 EXPRESSION TAG SEQADV 5VWM GLU A -9 UNP P47205 EXPRESSION TAG SEQADV 5VWM ALA A -8 UNP P47205 EXPRESSION TAG SEQADV 5VWM HIS A -7 UNP P47205 EXPRESSION TAG SEQADV 5VWM ARG A -6 UNP P47205 EXPRESSION TAG SEQADV 5VWM GLU A -5 UNP P47205 EXPRESSION TAG SEQADV 5VWM GLN A -4 UNP P47205 EXPRESSION TAG SEQADV 5VWM ILE A -3 UNP P47205 EXPRESSION TAG SEQADV 5VWM GLY A -2 UNP P47205 EXPRESSION TAG SEQADV 5VWM GLY A -1 UNP P47205 EXPRESSION TAG SEQADV 5VWM SER A 0 UNP P47205 EXPRESSION TAG SEQRES 1 A 400 MET SER HIS HIS HIS HIS HIS HIS SER GLY GLU VAL LYS SEQRES 2 A 400 PRO GLU VAL LYS PRO GLU THR HIS ILE ASN LEU LYS VAL SEQRES 3 A 400 SER ASP GLY SER SER GLU ILE PHE PHE LYS ILE LYS LYS SEQRES 4 A 400 THR THR PRO LEU ARG ARG LEU MET GLU ALA PHE ALA LYS SEQRES 5 A 400 ARG GLN GLY LYS GLU MET ASP SER LEU ARG PHE LEU TYR SEQRES 6 A 400 ASP GLY ILE ARG ILE GLN ALA ASP GLN THR PRO GLU ASP SEQRES 7 A 400 LEU ASP MET GLU ASP ASN ASP ILE ILE GLU ALA HIS ARG SEQRES 8 A 400 GLU GLN ILE GLY GLY SER MET ILE LYS GLN ARG THR LEU SEQRES 9 A 400 LYS ASN ILE ILE ARG ALA THR GLY VAL GLY LEU HIS SER SEQRES 10 A 400 GLY GLU LYS VAL TYR LEU THR LEU LYS PRO ALA PRO VAL SEQRES 11 A 400 ASP THR GLY ILE VAL PHE CYS ARG THR ASP LEU ASP PRO SEQRES 12 A 400 VAL VAL GLU ILE PRO ALA ARG ALA GLU ASN VAL GLY GLU SEQRES 13 A 400 THR THR MET SER THR THR LEU VAL LYS GLY ASP VAL LYS SEQRES 14 A 400 VAL ASP THR VAL GLU HIS LEU LEU SER ALA MET ALA GLY SEQRES 15 A 400 LEU GLY ILE ASP ASN ALA TYR VAL GLU LEU SER ALA SER SEQRES 16 A 400 GLU VAL PRO ILE MET ASP GLY SER ALA GLY PRO PHE VAL SEQRES 17 A 400 PHE LEU ILE GLN SER ALA GLY LEU GLN GLU GLN GLU ALA SEQRES 18 A 400 ALA LYS LYS PHE ILE ARG ILE LYS ARG GLU VAL SER VAL SEQRES 19 A 400 GLU GLU GLY ASP LYS ARG ALA VAL PHE VAL PRO PHE ASP SEQRES 20 A 400 GLY PHE LYS VAL SER PHE GLU ILE ASP PHE ASP HIS PRO SEQRES 21 A 400 VAL PHE ARG GLY ARG THR GLN GLN ALA SER VAL ASP PHE SEQRES 22 A 400 SER SER THR SER PHE VAL LYS GLU VAL SER ARG ALA ARG SEQRES 23 A 400 THR PHE GLY PHE MET ARG ASP ILE GLU TYR LEU ARG SER SEQRES 24 A 400 GLN ASN LEU ALA LEU GLY GLY SER VAL GLU ASN ALA ILE SEQRES 25 A 400 VAL VAL ASP GLU ASN ARG VAL LEU ASN GLU ASP GLY LEU SEQRES 26 A 400 ARG TYR GLU ASP GLU PHE VAL LYS HIS LYS ILE LEU ASP SEQRES 27 A 400 ALA ILE GLY ASP LEU TYR LEU LEU GLY ASN SER LEU ILE SEQRES 28 A 400 GLY GLU PHE ARG GLY PHE LYS SER GLY HIS ALA LEU ASN SEQRES 29 A 400 ASN GLN LEU LEU ARG THR LEU ILE ALA ASP LYS ASP ALA SEQRES 30 A 400 TRP GLU VAL VAL THR PHE GLU ASP ALA ARG THR ALA PRO SEQRES 31 A 400 ILE SER TYR MET ARG PRO ALA ALA ALA VAL HET C90 A 401 32 HET ZN A 402 1 HET CL A 403 1 HET CA A 404 1 HET EDO A 405 4 HET EDO A 406 4 HET EDO A 407 4 HETNAM C90 N-{(1S,2R)-2-HYDROXY-1-[(HYDROXYAMINO)CARBONYL]PROPYL}- HETNAM 2 C90 4-{[4-(MORPHOLIN-4-YLMETHYL)PHENYL]ETHYNYL}BENZAMIDE HETNAM ZN ZINC ION HETNAM CL CHLORIDE ION HETNAM CA CALCIUM ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 C90 C24 H27 N3 O5 FORMUL 3 ZN ZN 2+ FORMUL 4 CL CL 1- FORMUL 5 CA CA 2+ FORMUL 6 EDO 3(C2 H6 O2) FORMUL 9 HOH *359(H2 O) HELIX 1 AA1 ARG A 53 GLU A 55 5 3 HELIX 2 AA2 VAL A 76 GLY A 87 1 12 HELIX 3 AA3 ALA A 107 GLY A 118 1 12 HELIX 4 AA4 SER A 180 VAL A 185 1 6 HELIX 5 AA5 ASP A 196 GLN A 203 1 8 HELIX 6 AA6 ASP A 232 TYR A 247 1 16 HELIX 7 AA7 LEU A 248 GLY A 250 5 3 HELIX 8 AA8 GLY A 263 ASP A 277 1 15 HELIX 9 AA9 ASP A 288 ALA A 292 5 5 SHEET 1 AA1 2 LYS A 3 LEU A 7 0 SHEET 2 AA1 2 LEU A 119 ALA A 125 -1 O GLN A 120 N THR A 6 SHEET 1 AA2 5 ILE A 11 VAL A 16 0 SHEET 2 AA2 5 LYS A 23 LYS A 29 -1 O LEU A 26 N ALA A 13 SHEET 3 AA2 5 ALA A 91 LEU A 95 -1 O GLU A 94 N THR A 27 SHEET 4 AA2 5 ILE A 37 ARG A 41 1 N VAL A 38 O VAL A 93 SHEET 5 AA2 5 VAL A 48 PRO A 51 -1 O ILE A 50 N PHE A 39 SHEET 1 AA3 3 VAL A 57 GLU A 59 0 SHEET 2 AA3 3 THR A 65 LYS A 68 -1 O THR A 65 N GLU A 59 SHEET 3 AA3 3 VAL A 71 ASP A 74 -1 O VAL A 73 N LEU A 66 SHEET 1 AA4 5 VAL A 135 GLU A 139 0 SHEET 2 AA4 5 LYS A 142 VAL A 147 -1 O PHE A 146 N VAL A 135 SHEET 3 AA4 5 SER A 252 PHE A 260 -1 O PHE A 260 N ARG A 143 SHEET 4 AA4 5 PHE A 152 GLU A 157 1 N LYS A 153 O PHE A 257 SHEET 5 AA4 5 GLN A 171 ASP A 175 -1 O VAL A 174 N VAL A 154 SHEET 1 AA5 5 VAL A 135 GLU A 139 0 SHEET 2 AA5 5 LYS A 142 VAL A 147 -1 O PHE A 146 N VAL A 135 SHEET 3 AA5 5 SER A 252 PHE A 260 -1 O PHE A 260 N ARG A 143 SHEET 4 AA5 5 PHE A 128 ILE A 131 1 N ILE A 129 O ILE A 254 SHEET 5 AA5 5 TRP A 281 VAL A 284 -1 O VAL A 284 N PHE A 128 SHEET 1 AA6 2 PHE A 191 PHE A 193 0 SHEET 2 AA6 2 ILE A 215 VAL A 217 1 O VAL A 217 N GLY A 192 LINK OE2 GLU A 59 CA CA A 404 1555 1555 2.30 LINK O THR A 61 CA CA A 404 1555 1555 2.45 LINK OG1 THR A 61 CA CA A 404 1555 1555 2.55 LINK NE2 HIS A 78 ZN ZN A 402 1555 1555 1.99 LINK NE2 HIS A 237 ZN ZN A 402 1555 1555 2.12 LINK OD1 ASP A 241 ZN ZN A 402 1555 1555 2.02 LINK O22 C90 A 401 ZN ZN A 402 1555 1555 2.06 LINK O24 C90 A 401 ZN ZN A 402 1555 1555 2.12 LINK CA CA A 404 O1 EDO A 406 1555 1555 2.39 LINK CA CA A 404 O2 EDO A 406 1555 1555 2.57 LINK CA CA A 404 O HOH A 591 1555 1555 2.36 LINK CA CA A 404 O HOH A 662 1555 1555 2.37 CISPEP 1 ASP A 45 PRO A 46 0 -0.17 SITE 1 AC1 15 MET A 62 GLU A 77 HIS A 78 THR A 190 SITE 2 AC1 15 PHE A 191 ILE A 197 GLY A 209 SER A 210 SITE 3 AC1 15 VAL A 216 HIS A 237 LYS A 238 ASP A 241 SITE 4 AC1 15 HIS A 264 ZN A 402 HOH A 761 SITE 1 AC2 4 HIS A 78 HIS A 237 ASP A 241 C90 A 401 SITE 1 AC3 2 GLY A 263 LEU A 266 SITE 1 AC4 5 GLU A 59 THR A 61 EDO A 406 HOH A 591 SITE 2 AC4 5 HOH A 662 SITE 1 AC5 7 GLY A 108 VAL A 111 PHE A 112 SER A 186 SITE 2 AC5 7 ARG A 272 THR A 273 HOH A 647 SITE 1 AC6 6 GLU A 59 THR A 61 MET A 62 SER A 63 SITE 2 AC6 6 CA A 404 HOH A 575 SITE 1 AC7 6 GLU A 138 GLY A 140 LEU A 228 GLU A 231 SITE 2 AC7 6 HOH A 561 HOH A 570 CRYST1 35.850 47.590 48.410 111.30 109.00 98.39 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027894 0.004116 0.012705 0.00000 SCALE2 0.000000 0.021240 0.010384 0.00000 SCALE3 0.000000 0.000000 0.024318 0.00000