PDB Short entry for 5WE3 HEADER TOXIN 06-JUL-17 5WE3 TITLE SOLUTION NMR STRUCTURE OF PAURTX-3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-THERAPHOTOXIN-PS1A; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BETA-TRTX-PS1A,PHRIXOTOXIN-3,PAURTX3; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: PARAPHYSA SCROFA; SOURCE 4 ORGANISM_COMMON: CHILEAN COPPER TARANTULA; SOURCE 5 ORGANISM_TAXID: 269635 KEYWDS DISULFIDE RICH PEPTIDES, PAIN, RATIONAL DRUG DESIGN, SERUM STABILITY, KEYWDS 2 SPIDER VENOM, VOLTAGE-GATED ION CHANNELS, TRIMOLECULAR COMPLEX, KEYWDS 3 TOXIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.J.AGWA,C.I.SCHROEDER REVDAT 4 14-JUN-23 5WE3 1 REMARK REVDAT 3 08-JAN-20 5WE3 1 REMARK REVDAT 2 27-SEP-17 5WE3 1 REMARK REVDAT 1 13-SEP-17 5WE3 0 JRNL AUTH A.J.AGWA,Y.H.HUANG,D.J.CRAIK,S.T.HENRIQUES,C.I.SCHROEDER JRNL TITL LENGTHS OF THE C-TERMINUS AND INTERCONNECTING LOOPS IMPACT JRNL TITL 2 STABILITY OF SPIDER-DERIVED GATING MODIFIER TOXINS. JRNL REF TOXINS (BASEL) V. 9 2017 JRNL REFN ESSN 2072-6651 JRNL PMID 28805686 JRNL DOI 10.3390/TOXINS9080248 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5WE3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JUL-17. REMARK 100 THE DEPOSITION ID IS D_1000228862. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 308; 303; 293; 288; 283 REMARK 210 PH : 4; 4; 4; 4; 4; 4 REMARK 210 IONIC STRENGTH : NULL; NULL; NULL; NULL; NULL; REMARK 210 NULL REMARK 210 PRESSURE : AMBIENT MMHG; AMBIENT MMHG; REMARK 210 AMBIENT MMHG; AMBIENT MMHG; REMARK 210 AMBIENT MMHG; AMBIENT MMHG REMARK 210 SAMPLE CONTENTS : 1 MG/ML PAURTX-3, 90% H2O/10% REMARK 210 D2O; 1 MG/ML PAURTX-3, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H TOCSY; 2D NOESY; 2D 1H REMARK 210 -15N HSQC; 2D 1H-13C HSQC; 2D 1H- REMARK 210 1H NOESY; 1D 1H; 2D ECOSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA, ANALYSIS REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 6 1.86 86.16 REMARK 500 1 LYS A 28 -3.34 77.00 REMARK 500 2 LEU A 6 -14.16 85.38 REMARK 500 2 CYS A 17 81.76 -68.60 REMARK 500 3 LEU A 6 -4.60 89.16 REMARK 500 3 ASN A 13 65.99 -160.14 REMARK 500 3 CYS A 17 76.10 -69.31 REMARK 500 4 LEU A 6 -0.79 81.96 REMARK 500 4 ASN A 13 61.25 -151.66 REMARK 500 5 LEU A 6 -10.96 81.62 REMARK 500 5 ASN A 13 74.16 -159.74 REMARK 500 5 ASN A 20 -47.92 -169.66 REMARK 500 6 LEU A 6 -10.74 79.42 REMARK 500 6 ASN A 13 64.78 -153.14 REMARK 500 7 LEU A 6 10.44 81.84 REMARK 500 7 ASN A 13 71.59 -155.50 REMARK 500 7 CYS A 17 88.51 -68.35 REMARK 500 8 LEU A 6 -12.52 82.90 REMARK 500 8 ASN A 13 66.88 -160.00 REMARK 500 9 CYS A 2 169.39 61.07 REMARK 500 9 LEU A 6 5.67 80.99 REMARK 500 9 ASN A 13 61.79 -153.30 REMARK 500 9 CYS A 17 79.15 -68.43 REMARK 500 10 LEU A 6 1.62 81.80 REMARK 500 11 LEU A 6 8.66 80.84 REMARK 500 11 ASN A 13 78.03 -154.97 REMARK 500 11 CYS A 17 74.24 -100.14 REMARK 500 12 CYS A 2 168.98 52.42 REMARK 500 12 LEU A 6 -6.18 82.80 REMARK 500 12 ASN A 13 68.85 -156.31 REMARK 500 12 CYS A 17 93.13 -67.78 REMARK 500 13 LEU A 6 -10.86 84.80 REMARK 500 13 ASN A 13 69.33 -160.28 REMARK 500 13 CYS A 17 74.05 -68.74 REMARK 500 14 LEU A 6 5.88 81.51 REMARK 500 14 ASN A 13 73.01 -160.94 REMARK 500 14 ASN A 20 -46.45 -166.59 REMARK 500 15 LEU A 6 -4.69 84.76 REMARK 500 15 ASN A 13 56.48 -146.51 REMARK 500 16 LEU A 6 -10.01 83.06 REMARK 500 16 CYS A 9 -169.60 -108.25 REMARK 500 16 ASN A 13 60.87 -156.93 REMARK 500 17 LEU A 6 4.44 80.67 REMARK 500 17 ASN A 13 74.65 -161.97 REMARK 500 18 ASN A 13 70.04 -160.96 REMARK 500 18 CYS A 17 92.41 -68.91 REMARK 500 19 LEU A 6 -5.19 84.20 REMARK 500 19 ASN A 13 69.46 -154.71 REMARK 500 19 CYS A 17 71.81 -69.01 REMARK 500 20 LEU A 6 7.59 82.76 REMARK 500 REMARK 500 THIS ENTRY HAS 52 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 30317 RELATED DB: BMRB REMARK 900 SOLUTION NMR STRUCTURE OF PAURTX-3 DBREF 5WE3 A 1 34 UNP P84510 TX3_PARSR 1 34 SEQRES 1 A 34 ASP CYS LEU GLY PHE LEU TRP LYS CYS ASN PRO SER ASN SEQRES 2 A 34 ASP LYS CYS CYS ARG PRO ASN LEU VAL CYS SER ARG LYS SEQRES 3 A 34 ASP LYS TRP CYS LYS TYR GLN ILE SHEET 1 AA1 3 TRP A 7 LYS A 8 0 SHEET 2 AA1 3 TRP A 29 TYR A 32 -1 O CYS A 30 N TRP A 7 SHEET 3 AA1 3 LEU A 21 CYS A 23 -1 N VAL A 22 O LYS A 31 SSBOND 1 CYS A 2 CYS A 17 1555 1555 2.02 SSBOND 2 CYS A 9 CYS A 23 1555 1555 2.02 SSBOND 3 CYS A 16 CYS A 30 1555 1555 2.02 CISPEP 1 ARG A 18 PRO A 19 1 1.25 CISPEP 2 ARG A 18 PRO A 19 2 0.99 CISPEP 3 ARG A 18 PRO A 19 3 -1.56 CISPEP 4 ARG A 18 PRO A 19 4 -1.12 CISPEP 5 ARG A 18 PRO A 19 5 -0.11 CISPEP 6 ARG A 18 PRO A 19 6 0.18 CISPEP 7 ARG A 18 PRO A 19 7 1.72 CISPEP 8 ARG A 18 PRO A 19 8 5.31 CISPEP 9 ARG A 18 PRO A 19 9 0.99 CISPEP 10 ARG A 18 PRO A 19 10 -1.35 CISPEP 11 ARG A 18 PRO A 19 11 3.85 CISPEP 12 ARG A 18 PRO A 19 12 -2.33 CISPEP 13 ARG A 18 PRO A 19 13 -1.19 CISPEP 14 ARG A 18 PRO A 19 14 -3.81 CISPEP 15 ARG A 18 PRO A 19 15 2.32 CISPEP 16 ARG A 18 PRO A 19 16 -0.37 CISPEP 17 ARG A 18 PRO A 19 17 -0.26 CISPEP 18 ARG A 18 PRO A 19 18 -0.01 CISPEP 19 ARG A 18 PRO A 19 19 2.72 CISPEP 20 ARG A 18 PRO A 19 20 1.01 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000