PDB Short entry for 5WIV HEADER SIGNALING PROTEIN/ANTAGONIST 20-JUL-17 5WIV TITLE STRUCTURE OF THE SODIUM-BOUND HUMAN D4 DOPAMINE RECEPTOR IN COMPLEX TITLE 2 WITH NEMONAPRIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: D(4) DOPAMINE RECEPTOR, SOLUBLE CYTOCHROME B562 CHIMERA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: D(2C) DOPAMINE RECEPTOR, DOPAMINE D4 RECEPTOR, CYTOCHROME B- COMPND 5 562; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS, ESCHERICHIA COLI; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606, 562; SOURCE 5 GENE: DRD4, CYBC; SOURCE 6 EXPRESSION_SYSTEM: INSECTA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 50557; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PFASTBAC1-HM KEYWDS GPCR, DOPAMINE RECEPTOR, ANTAGONIST, SODIUM, SIGNALING PROTEIN- KEYWDS 2 ANTAGONIST COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.WACKER,S.WANG,A.LEVIT,T.CHE,R.M.BETZ,J.D.MCCORVY, AUTHOR 2 A.J.VENKATAKRISHNAN,X.-P.HUANG,R.O.DROR,B.K.SHOICHET,B.L.ROTH REVDAT 5 04-OCT-23 5WIV 1 REMARK REVDAT 4 27-NOV-19 5WIV 1 REMARK REVDAT 3 17-JAN-18 5WIV 1 REMARK REVDAT 2 01-NOV-17 5WIV 1 JRNL REVDAT 1 18-OCT-17 5WIV 0 JRNL AUTH S.WANG,D.WACKER,A.LEVIT,T.CHE,R.M.BETZ,J.D.MCCORVY, JRNL AUTH 2 A.J.VENKATAKRISHNAN,X.P.HUANG,R.O.DROR,B.K.SHOICHET,B.L.ROTH JRNL TITL D4 DOPAMINE RECEPTOR HIGH-RESOLUTION STRUCTURES ENABLE THE JRNL TITL 2 DISCOVERY OF SELECTIVE AGONISTS. JRNL REF SCIENCE V. 358 381 2017 JRNL REFN ESSN 1095-9203 JRNL PMID 29051383 JRNL DOI 10.1126/SCIENCE.AAN5468 REMARK 2 REMARK 2 RESOLUTION. 2.14 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.14 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.69 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 24912 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 1237 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.6896 - 4.4532 0.98 2792 159 0.1875 0.2032 REMARK 3 2 4.4532 - 3.5365 0.99 2707 141 0.1783 0.2303 REMARK 3 3 3.5365 - 3.0900 1.00 2704 146 0.1996 0.2407 REMARK 3 4 3.0900 - 2.8077 1.00 2696 148 0.1978 0.2414 REMARK 3 5 2.8077 - 2.6066 0.99 2682 132 0.1941 0.2283 REMARK 3 6 2.6066 - 2.4530 0.99 2664 137 0.2135 0.2398 REMARK 3 7 2.4530 - 2.3302 0.99 2653 129 0.2300 0.2499 REMARK 3 8 2.3302 - 2.2288 0.95 2554 145 0.2509 0.2615 REMARK 3 9 2.2288 - 2.1430 0.83 2223 100 0.2621 0.2839 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.600 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 47.25 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3126 REMARK 3 ANGLE : 1.075 4214 REMARK 3 CHIRALITY : 0.038 494 REMARK 3 PLANARITY : 0.006 513 REMARK 3 DIHEDRAL : 15.093 1148 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 32 THROUGH 227 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.9336 1.3923 -13.3452 REMARK 3 T TENSOR REMARK 3 T11: 0.3429 T22: 0.3358 REMARK 3 T33: 0.3308 T12: -0.0324 REMARK 3 T13: -0.0403 T23: 0.0115 REMARK 3 L TENSOR REMARK 3 L11: 2.0249 L22: 1.3483 REMARK 3 L33: 1.2017 L12: -0.9541 REMARK 3 L13: 0.1917 L23: 0.0308 REMARK 3 S TENSOR REMARK 3 S11: 0.0115 S12: 0.0095 S13: -0.1141 REMARK 3 S21: 0.0129 S22: 0.1051 S23: 0.2472 REMARK 3 S31: 0.0361 S32: -0.0979 S33: -0.1015 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1001 THROUGH 1106 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.6708 -40.1533 -10.5752 REMARK 3 T TENSOR REMARK 3 T11: 0.5749 T22: 0.5013 REMARK 3 T33: 0.5618 T12: -0.0294 REMARK 3 T13: -0.0186 T23: -0.0422 REMARK 3 L TENSOR REMARK 3 L11: 2.1278 L22: 1.3209 REMARK 3 L33: 0.2381 L12: 1.0929 REMARK 3 L13: -0.0697 L23: 0.0408 REMARK 3 S TENSOR REMARK 3 S11: -0.0655 S12: -0.1590 S13: 0.5166 REMARK 3 S21: 0.2097 S22: -0.0260 S23: 0.1087 REMARK 3 S31: -0.1079 S32: 0.1299 S33: 0.0897 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 383 THROUGH 465 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.3322 -0.2475 -21.7619 REMARK 3 T TENSOR REMARK 3 T11: 0.3989 T22: 0.4047 REMARK 3 T33: 0.3871 T12: -0.0066 REMARK 3 T13: -0.0428 T23: -0.0013 REMARK 3 L TENSOR REMARK 3 L11: 1.2765 L22: 1.7773 REMARK 3 L33: 1.0083 L12: -0.6919 REMARK 3 L13: -0.2893 L23: -0.5192 REMARK 3 S TENSOR REMARK 3 S11: 0.0311 S12: 0.1074 S13: -0.2196 REMARK 3 S21: -0.3880 S22: 0.0265 S23: 0.2018 REMARK 3 S31: 0.2011 S32: -0.0306 S33: -0.0201 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5WIV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-JUL-17. REMARK 100 THE DEPOSITION ID IS D_1000229110. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.033 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL CRYO-COOLED REMARK 200 SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24926 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.143 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 5.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.65900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 5WIU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM TRIS-HCL, PH 5.9-6.2, 100-140 REMARK 280 MM AMMONIUM PHOSPHATE DIBASIC, 180-200 MM SODIUM CHLORIDE, 34% REMARK 280 PEG400, LIPIDIC CUBIC PHASE, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.59050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 41.59050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 33.93050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 81.41800 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 33.93050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 81.41800 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 41.59050 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 33.93050 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 81.41800 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 41.59050 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 33.93050 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 81.41800 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 P PO4 A1206 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 GLY A -2 REMARK 465 THR A -1 REMARK 465 THR A 0 REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 ASN A 3 REMARK 465 ARG A 4 REMARK 465 SER A 5 REMARK 465 THR A 6 REMARK 465 ALA A 7 REMARK 465 ASP A 8 REMARK 465 ALA A 9 REMARK 465 ASP A 10 REMARK 465 GLY A 11 REMARK 465 LEU A 12 REMARK 465 LEU A 13 REMARK 465 ALA A 14 REMARK 465 GLY A 15 REMARK 465 ARG A 16 REMARK 465 GLY A 17 REMARK 465 PRO A 18 REMARK 465 ALA A 19 REMARK 465 ALA A 20 REMARK 465 GLY A 21 REMARK 465 ALA A 22 REMARK 465 SER A 23 REMARK 465 ALA A 24 REMARK 465 GLY A 25 REMARK 465 ALA A 26 REMARK 465 SER A 27 REMARK 465 ALA A 28 REMARK 465 GLY A 29 REMARK 465 LEU A 30 REMARK 465 ALA A 31 REMARK 465 VAL A 177 REMARK 465 ARG A 178 REMARK 465 GLY A 179 REMARK 465 ARG A 180 REMARK 465 ASP A 181 REMARK 465 ALA A 465 REMARK 465 CYS A 466 REMARK 465 CYS A 467 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 33 CG CD OE1 NE2 REMARK 470 GLU A 62 CG CD OE1 OE2 REMARK 470 ARG A 63 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 102 CG CD1 CD2 REMARK 470 ARG A 142 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 146 CG CD OE1 NE2 REMARK 470 ASP A 176 CG OD1 OD2 REMARK 470 LYS A1015 CG CD CE NZ REMARK 470 LYS A1019 CG CD CE NZ REMARK 470 PRO A1045 CG CD REMARK 470 LYS A1051 CG CD CE NZ REMARK 470 SER A1052 OG REMARK 470 ASP A1054 CG OD1 OD2 REMARK 470 SER A1055 OG REMARK 470 ARG A1062 CG CD NE CZ NH1 NH2 REMARK 470 LYS A1085 CG CD CE NZ REMARK 470 GLU A1092 CG CD OE1 OE2 REMARK 470 GLN A1093 CG CD OE1 NE2 REMARK 470 LYS A1095 CG CD CE NZ REMARK 470 ARG A1098 CG CD NE CZ NH1 NH2 REMARK 470 ASN A1099 CG OD1 ND2 REMARK 470 TYR A1101 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ILE A1102 CG1 CG2 CD1 REMARK 470 LYS A1104 CG CD CE NZ REMARK 470 LYS A 391 CG CD CE NZ REMARK 470 ARG A 394 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 428 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 454 CG CD OE1 OE2 REMARK 470 ARG A 460 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 461 NZ REMARK 470 ARG A 464 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 1018 O HOH A 1301 2.09 REMARK 500 O4 PEG A 1215 O HOH A 1302 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH1 ARG A 145 O LEU A 171 4555 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 201 -61.47 -135.32 REMARK 500 ALA A1100 -59.00 -128.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 OLA A 1207 REMARK 610 OLA A 1208 REMARK 610 OLA A 1209 REMARK 610 OLA A 1212 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1224 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 80 OD1 REMARK 620 2 SER A 122 OG 122.8 REMARK 620 3 HOH A1349 O 111.2 117.7 REMARK 620 4 HOH A1357 O 83.9 93.6 122.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AQD A 1201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 1202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 1203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 1204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 1205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 1206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLA A 1207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLA A 1208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLA A 1209 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLA A 1210 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLA A 1211 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLA A 1212 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLA A 1213 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLA A 1214 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 1215 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 1216 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 1217 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 1218 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 1219 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 1220 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 1221 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 1222 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 1223 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 1224 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5WIU RELATED DB: PDB DBREF 5WIV A 1 1001 UNP P21917 DRD4_HUMAN 1 228 DBREF 5WIV A 1002 1106 UNP P0ABE7 C562_ECOLX 24 128 DBREF 5WIV A 383 467 UNP P21917 DRD4_HUMAN 383 467 SEQADV 5WIV GLY A -3 UNP P21917 EXPRESSION TAG SEQADV 5WIV GLY A -2 UNP P21917 EXPRESSION TAG SEQADV 5WIV THR A -1 UNP P21917 EXPRESSION TAG SEQADV 5WIV THR A 0 UNP P21917 EXPRESSION TAG SEQADV 5WIV TRP A 1007 UNP P0ABE7 MET 29 ENGINEERED MUTATION SEQADV 5WIV ILE A 1102 UNP P0ABE7 HIS 124 ENGINEERED MUTATION SEQADV 5WIV LEU A 1106 UNP P0ABE7 ARG 128 ENGINEERED MUTATION SEQRES 1 A 422 GLY GLY THR THR MET GLY ASN ARG SER THR ALA ASP ALA SEQRES 2 A 422 ASP GLY LEU LEU ALA GLY ARG GLY PRO ALA ALA GLY ALA SEQRES 3 A 422 SER ALA GLY ALA SER ALA GLY LEU ALA GLY GLN GLY ALA SEQRES 4 A 422 ALA ALA LEU VAL GLY GLY VAL LEU LEU ILE GLY ALA VAL SEQRES 5 A 422 LEU ALA GLY ASN SER LEU VAL CYS VAL SER VAL ALA THR SEQRES 6 A 422 GLU ARG ALA LEU GLN THR PRO THR ASN SER PHE ILE VAL SEQRES 7 A 422 SER LEU ALA ALA ALA ASP LEU LEU LEU ALA LEU LEU VAL SEQRES 8 A 422 LEU PRO LEU PHE VAL TYR SER GLU VAL GLN GLY GLY ALA SEQRES 9 A 422 TRP LEU LEU SER PRO ARG LEU CYS ASP ALA LEU MET ALA SEQRES 10 A 422 MET ASP VAL MET LEU CYS THR ALA SER ILE PHE ASN LEU SEQRES 11 A 422 CYS ALA ILE SER VAL ASP ARG PHE VAL ALA VAL ALA VAL SEQRES 12 A 422 PRO LEU ARG TYR ASN ARG GLN GLY GLY SER ARG ARG GLN SEQRES 13 A 422 LEU LEU LEU ILE GLY ALA THR TRP LEU LEU SER ALA ALA SEQRES 14 A 422 VAL ALA ALA PRO VAL LEU CYS GLY LEU ASN ASP VAL ARG SEQRES 15 A 422 GLY ARG ASP PRO ALA VAL CYS ARG LEU GLU ASP ARG ASP SEQRES 16 A 422 TYR VAL VAL TYR SER SER VAL CYS SER PHE PHE LEU PRO SEQRES 17 A 422 CYS PRO LEU MET LEU LEU LEU TYR TRP ALA THR PHE ARG SEQRES 18 A 422 GLY LEU GLN ARG TRP GLU VAL ALA ARG ARG ALA ASP LEU SEQRES 19 A 422 GLU ASP ASN TRP GLU THR LEU ASN ASP ASN LEU LYS VAL SEQRES 20 A 422 ILE GLU LYS ALA ASP ASN ALA ALA GLN VAL LYS ASP ALA SEQRES 21 A 422 LEU THR LYS MET ARG ALA ALA ALA LEU ASP ALA GLN LYS SEQRES 22 A 422 ALA THR PRO PRO LYS LEU GLU ASP LYS SER PRO ASP SER SEQRES 23 A 422 PRO GLU MET LYS ASP PHE ARG HIS GLY PHE ASP ILE LEU SEQRES 24 A 422 VAL GLY GLN ILE ASP ASP ALA LEU LYS LEU ALA ASN GLU SEQRES 25 A 422 GLY LYS VAL LYS GLU ALA GLN ALA ALA ALA GLU GLN LEU SEQRES 26 A 422 LYS THR THR ARG ASN ALA TYR ILE GLN LYS TYR LEU ALA SEQRES 27 A 422 LYS ILE THR GLY ARG GLU ARG LYS ALA MET ARG VAL LEU SEQRES 28 A 422 PRO VAL VAL VAL GLY ALA PHE LEU LEU CYS TRP THR PRO SEQRES 29 A 422 PHE PHE VAL VAL HIS ILE THR GLN ALA LEU CYS PRO ALA SEQRES 30 A 422 CYS SER VAL PRO PRO ARG LEU VAL SER ALA VAL THR TRP SEQRES 31 A 422 LEU GLY TYR VAL ASN SER ALA LEU ASN PRO VAL ILE TYR SEQRES 32 A 422 THR VAL PHE ASN ALA GLU PHE ARG ASN VAL PHE ARG LYS SEQRES 33 A 422 ALA LEU ARG ALA CYS CYS HET AQD A1201 27 HET PO4 A1202 5 HET PO4 A1203 5 HET PO4 A1204 5 HET PO4 A1205 5 HET PO4 A1206 5 HET OLA A1207 17 HET OLA A1208 17 HET OLA A1209 17 HET OLA A1210 20 HET OLA A1211 20 HET OLA A1212 16 HET OLA A1213 20 HET OLA A1214 20 HET PEG A1215 7 HET PEG A1216 7 HET PEG A1217 7 HET PEG A1218 7 HET PEG A1219 7 HET PEG A1220 7 HET PEG A1221 7 HET PEG A1222 7 HET PEG A1223 7 HET NA A1224 1 HETNAM AQD NEMONAPRIDE HETNAM PO4 PHOSPHATE ION HETNAM OLA OLEIC ACID HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM NA SODIUM ION HETSYN AQD N-[(2R,3R)-1-BENZYL-2-METHYLPYRROLIDIN-3-YL]-5-CHLORO- HETSYN 2 AQD 2-METHOXY-4-(METHYLAMINO)BENZAMIDE FORMUL 2 AQD C21 H26 CL N3 O2 FORMUL 3 PO4 5(O4 P 3-) FORMUL 8 OLA 8(C18 H34 O2) FORMUL 16 PEG 9(C4 H10 O3) FORMUL 25 NA NA 1+ FORMUL 26 HOH *67(H2 O) HELIX 1 AA1 GLY A 32 GLU A 62 1 31 HELIX 2 AA2 ARG A 63 GLN A 66 5 4 HELIX 3 AA3 THR A 67 VAL A 87 1 21 HELIX 4 AA4 VAL A 87 GLN A 97 1 11 HELIX 5 AA5 SER A 104 VAL A 139 1 36 HELIX 6 AA6 ARG A 150 ALA A 168 1 19 HELIX 7 AA7 PRO A 169 GLY A 173 5 5 HELIX 8 AA8 ASP A 189 PHE A 201 1 13 HELIX 9 AA9 LEU A 203 ARG A 221 1 19 HELIX 10 AB1 ARG A 226 LYS A 1019 1 21 HELIX 11 AB2 ASN A 1022 LYS A 1042 1 21 HELIX 12 AB3 PRO A 1045 GLU A 1049 5 5 HELIX 13 AB4 SER A 1055 GLU A 1081 1 27 HELIX 14 AB5 LYS A 1083 GLN A 1093 1 11 HELIX 15 AB6 GLN A 1093 ARG A 1098 1 6 HELIX 16 AB7 ILE A 1102 THR A 386 1 9 HELIX 17 AB8 GLY A 387 MET A 393 1 7 HELIX 18 AB9 ARG A 394 CYS A 420 1 27 HELIX 19 AC1 PRO A 426 ASN A 452 1 27 HELIX 20 AC2 ASN A 452 LYS A 461 1 10 SSBOND 1 CYS A 108 CYS A 185 1555 1555 2.05 SSBOND 2 CYS A 420 CYS A 423 1555 1555 2.08 LINK OD1 ASP A 80 NA NA A1224 1555 1555 2.43 LINK OG SER A 122 NA NA A1224 1555 1555 2.34 LINK NA NA A1224 O HOH A1349 1555 1555 2.47 LINK NA NA A1224 O HOH A1357 1555 1555 2.26 SITE 1 AC1 13 LEU A 111 ASP A 115 THR A 120 LEU A 187 SITE 2 AC1 13 VAL A 193 SER A 196 SER A 200 PHE A 410 SITE 3 AC1 13 PHE A 411 HIS A 414 THR A 434 TYR A 438 SITE 4 AC1 13 HOH A1321 SITE 1 AC2 6 TYR A 143 GLY A 148 SER A 149 ARG A 151 SITE 2 AC2 6 GLN A 152 PO4 A1205 SITE 1 AC3 2 GLN A 220 ARG A 390 SITE 1 AC4 2 LEU A 85 LEU A 86 SITE 1 AC5 4 PRO A 68 ARG A 133 ALA A 136 PO4 A1202 SITE 1 AC6 4 ALA A1020 ASP A1021 GLN A1088 HOH A1352 SITE 1 AC7 4 THR A 67 SER A 71 TRP A 160 PEG A1222 SITE 1 AC8 6 GLN A 33 GLY A 40 ALA A 47 GLU A 95 SITE 2 AC8 6 SER A 431 TRP A 435 SITE 1 AC9 7 ASP A 132 ARG A 151 LEU A 155 TYR A 195 SITE 2 AC9 7 CYS A 199 OLA A1212 HOH A1332 SITE 1 AD1 6 LEU A 54 SER A 58 THR A 449 PHE A 455 SITE 2 AD1 6 ARG A 456 PHE A 459 SITE 1 AD2 7 LEU A 209 TYR A 212 PHE A 216 ARG A 390 SITE 2 AD2 7 PRO A 397 GLY A 401 OLA A1213 SITE 1 AD3 7 ALA A 138 ASP A 191 VAL A 194 CYS A 199 SITE 2 AD3 7 OLA A1209 PEG A1216 HOH A1324 SITE 1 AD4 5 PRO A 397 VAL A 398 ALA A 402 PHE A 451 SITE 2 AD4 5 OLA A1211 SITE 1 AD5 6 PHE A 202 VAL A 412 THR A 416 LEU A 419 SITE 2 AD5 6 PRO A 426 GLU A1081 SITE 1 AD6 1 HOH A1302 SITE 1 AD7 1 OLA A1212 SITE 1 AD8 1 MET A 114 SITE 1 AD9 1 PRO A 89 SITE 1 AE1 1 SER A 53 SITE 1 AE2 4 TYR A 93 LEU A 103 SER A 104 PEG A1221 SITE 1 AE3 3 TYR A 93 SER A 104 PEG A1220 SITE 1 AE4 1 OLA A1207 SITE 1 AE5 1 ALA A 432 SITE 1 AE6 5 ASP A 80 SER A 122 SER A 441 HOH A1349 SITE 2 AE6 5 HOH A1357 CRYST1 67.861 162.836 83.181 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014736 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006141 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012022 0.00000